Wall clock time and date at job start Tue Mar 31 2020 18:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99778 * 2 1 4 4 H 1.48496 * 109.46904 * 269.99539 * 3 2 1 5 5 H 1.48494 * 109.47399 * 29.99822 * 3 2 1 6 6 H 1.48507 * 109.46979 * 150.00042 * 3 2 1 7 7 C 1.38817 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99522 * 160.13234 * 7 2 1 9 9 N 1.36933 * 120.00031 * 340.41436 * 7 2 1 10 10 C 1.50170 * 120.53573 * 336.76561 * 9 7 2 11 11 C 1.46242 * 107.53356 * 109.56692 * 10 9 7 12 12 C 1.52519 * 114.27692 * 58.40698 * 11 10 9 13 13 C 1.50120 * 105.41545 * 270.59397 * 12 11 10 14 14 H 1.08996 * 109.21030 * 337.38553 * 13 12 11 15 15 N 1.46506 * 109.20972 * 218.02698 * 13 12 11 16 16 C 1.34776 * 119.99805 * 154.99506 * 15 13 12 17 17 O 1.21596 * 120.00242 * 0.02562 * 16 15 13 18 18 C 1.47528 * 119.99787 * 180.02562 * 16 15 13 19 19 C 1.36588 * 125.76999 * 179.71928 * 18 16 15 20 20 N 1.34820 * 106.84159 * 179.90071 * 19 18 16 21 21 C 1.46495 * 126.59530 * 180.13531 * 20 19 18 22 22 C 1.52995 * 109.47302 * 125.24396 * 21 20 19 23 23 C 1.53005 * 117.50016 * 243.61830 * 22 21 20 24 24 C 1.53003 * 117.50166 * 174.99502 * 22 21 20 25 25 N 1.40216 * 106.80592 * 0.35457 * 20 19 18 26 26 N 1.28754 * 108.36682 * 359.77485 * 25 20 19 27 27 C 1.54844 * 110.81897 * 97.68509 * 13 12 11 28 28 C 1.43426 * 120.53767 * 156.48703 * 9 7 2 29 29 H 0.96994 * 119.99966 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.84452 * 229.07447 * 10 9 7 31 31 H 1.09000 * 109.84581 * 350.05934 * 10 9 7 32 32 H 1.08997 * 108.51728 * 179.64998 * 11 10 9 33 33 H 1.08999 * 108.52073 * 297.32390 * 11 10 9 34 34 H 1.09004 * 110.24820 * 29.56681 * 12 11 10 35 35 H 1.08997 * 110.24898 * 151.47728 * 12 11 10 36 36 H 0.96996 * 119.99908 * 335.00214 * 15 13 12 37 37 H 1.08003 * 126.58266 * 0.04386 * 19 18 16 38 38 H 1.08999 * 109.46631 * 245.24216 * 21 20 19 39 39 H 1.08995 * 109.47425 * 5.24041 * 21 20 19 40 40 H 1.09005 * 115.55086 * 29.32583 * 22 21 20 41 41 H 1.09001 * 117.49330 * 359.97438 * 23 22 21 42 42 H 1.08997 * 117.49685 * 145.02111 * 23 22 21 43 43 H 1.08998 * 117.50124 * 214.97765 * 24 22 21 44 44 H 1.09003 * 117.49301 * 359.97438 * 24 22 21 45 45 H 1.08999 * 109.35974 * 81.33846 * 27 13 12 46 46 H 1.08993 * 109.36178 * 200.92888 * 27 13 12 47 47 H 1.09002 * 108.16374 * 33.30193 * 28 9 7 48 48 H 1.08998 * 108.16060 * 149.87454 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0421 -1.2300 -0.3173 9 7 1.3851 -2.3536 0.3986 10 6 0.1853 -2.2979 1.3000 11 6 -0.9806 -2.6839 0.5060 12 6 -0.8819 -4.0715 -0.1193 13 6 -0.2302 -3.8618 -1.4552 14 1 -0.3804 -2.8289 -1.7694 15 7 -0.8447 -4.7584 -2.4374 16 6 -0.8200 -4.4417 -3.7472 17 8 -0.2872 -3.4120 -4.1138 18 6 -1.4393 -5.3444 -4.7362 19 6 -1.4871 -5.1380 -6.0856 20 7 -2.1339 -6.1936 -6.6195 21 6 -2.4227 -6.4143 -8.0386 22 6 -1.8734 -7.7772 -8.4649 23 6 -0.7637 -7.7937 -9.5181 24 6 -2.1772 -8.2474 -9.8888 25 7 -2.4815 -7.0370 -5.5546 26 7 -2.0570 -6.5059 -4.4612 27 6 1.2885 -4.1542 -1.3787 28 6 1.8619 -3.6320 -0.0435 29 1 -0.4850 0.8400 -0.0004 30 1 0.3138 -2.9922 2.1304 31 1 0.0550 -1.2848 1.6804 32 1 -1.8613 -2.6549 1.1476 33 1 -1.1118 -1.9547 -0.2935 34 1 -0.2672 -4.7225 0.5024 35 1 -1.8762 -4.5000 -0.2452 36 1 -1.2695 -5.5800 -2.1451 37 1 -1.0822 -4.2927 -6.6222 38 1 -3.5007 -6.3911 -8.1978 39 1 -1.9509 -5.6309 -8.6316 40 1 -1.8359 -8.5348 -7.6820 41 1 -0.4254 -6.8335 -9.9076 42 1 0.0041 -8.5620 -9.4282 43 1 -2.3391 -9.3142 -10.0429 44 1 -2.7687 -7.5858 -10.5218 45 1 1.4534 -5.2294 -1.4487 46 1 1.7941 -3.6585 -2.2073 47 1 2.9457 -3.5741 -0.1445 48 1 1.6371 -4.3649 0.7313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052826735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:42 Heat of formation + Delta-G solvation = 116.981786 kcal Electronic energy + Delta-G solvation = -28721.007567 eV Core-core repulsion = 24815.063868 eV Total energy + Delta-G solvation = -3905.943699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.28438 -39.33183 -38.21846 -37.49839 -34.60454 -34.27848 -32.19217 -31.51738 -31.04569 -29.77198 -28.18489 -26.10216 -24.24078 -23.65419 -23.03653 -22.84250 -22.26902 -21.33401 -20.26900 -19.73014 -19.00961 -18.10997 -16.66665 -16.56327 -16.28970 -15.66543 -15.37159 -15.02731 -14.77455 -14.65397 -14.42776 -14.03636 -13.98438 -13.66998 -13.42892 -13.10666 -12.57801 -12.35349 -12.16539 -12.14494 -12.07924 -11.77609 -11.39795 -11.37626 -11.19204 -11.11094 -10.81063 -10.71188 -10.55217 -10.41742 -10.33095 -10.16391 -9.98828 -9.71788 -9.53036 -9.41626 -9.33185 -9.26703 -8.48690 -8.27350 -6.62599 -5.70135 -3.08376 1.03339 1.77209 1.79973 3.13933 3.45251 3.51467 3.52217 3.54613 3.58117 3.80208 4.18099 4.18435 4.34600 4.40819 4.59815 4.65276 4.75106 4.82266 4.96230 5.07088 5.24715 5.31645 5.42121 5.47804 5.52291 5.56559 5.65873 5.71530 5.85994 5.99368 6.11107 6.18716 6.36121 6.40688 6.51561 6.57145 6.79426 6.95576 6.97714 7.02721 7.10891 7.22203 7.30855 7.66953 7.77070 7.83682 8.04054 8.05684 8.51924 8.60485 9.28316 9.95893 10.48515 11.37577 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019897 B = 0.002403 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.883875 B =11647.219556 C =12265.613075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.899 3.101 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.129 4.129 12 C -0.122 4.122 13 C 0.156 3.844 14 H 0.104 0.896 15 N -0.711 5.711 16 C 0.594 3.406 17 O -0.531 6.531 18 C -0.093 4.093 19 C 0.090 3.910 20 N -0.361 5.361 21 C 0.155 3.845 22 C -0.176 4.176 23 C -0.176 4.176 24 C -0.165 4.165 25 N -0.068 5.068 26 N -0.206 5.206 27 C -0.151 4.151 28 C 0.161 3.839 29 H 0.252 0.748 30 H 0.006 0.994 31 H 0.090 0.910 32 H 0.030 0.970 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.399 0.601 37 H 0.204 0.796 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.046 0.954 46 H 0.056 0.944 47 H 0.033 0.967 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 -15.585 -16.263 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.042 3.958 11 C -0.168 4.168 12 C -0.160 4.160 13 C 0.053 3.947 14 H 0.122 0.878 15 N -0.360 5.360 16 C 0.377 3.623 17 O -0.406 6.406 18 C -0.232 4.232 19 C -0.066 4.066 20 N -0.146 5.146 21 C 0.034 3.966 22 C -0.195 4.195 23 C -0.213 4.213 24 C -0.203 4.203 25 N -0.048 5.048 26 N -0.080 5.080 27 C -0.193 4.193 28 C 0.032 3.968 29 H 0.062 0.938 30 H 0.024 0.976 31 H 0.109 0.891 32 H 0.048 0.952 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.233 0.767 37 H 0.221 0.779 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.051 0.949 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.784 -15.959 -16.109 23.669 hybrid contribution 0.548 1.271 -0.634 1.522 sum -6.236 -14.688 -16.743 23.129 Atomic orbital electron populations 1.69961 1.05048 1.25132 1.54370 1.24887 0.95229 0.98182 1.01321 0.86341 0.79164 0.83973 0.77569 1.21613 1.21743 1.20720 1.19186 0.93669 0.85294 1.39440 0.91539 1.44295 1.33723 1.00896 1.52004 1.20171 0.85221 1.00525 0.89913 1.20932 0.98454 0.95010 1.02430 1.21368 0.98933 0.99751 0.95962 1.21337 0.92137 0.94766 0.86413 0.87829 1.46335 1.57882 1.25758 1.06039 1.16801 0.79246 0.84148 0.82086 1.90863 1.45231 1.24852 1.79697 1.21739 1.10595 0.97269 0.93622 1.23404 0.95427 0.93249 0.94538 1.50407 1.39150 1.15818 1.09224 1.21568 1.02717 0.97631 0.74706 1.22542 1.04801 0.97926 0.94215 1.23153 0.92263 1.03735 1.02136 1.22994 0.98939 1.02445 0.95911 1.81921 1.21222 1.14374 0.87325 1.74624 1.07453 1.06448 1.19464 1.23234 0.95257 0.98659 1.02181 1.20255 0.96392 0.88249 0.91928 0.93825 0.97563 0.89142 0.95150 0.87929 0.91814 0.92663 0.76707 0.77933 0.87965 0.87609 0.86159 0.88247 0.88281 0.88058 0.88204 0.93575 0.92466 0.94900 0.95313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.28 9.43 55.49 0.52 -24.76 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 21.98 29.60 -169.99 -5.03 16.95 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.76 9.62 -15.06 -0.14 -6.90 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.41 16 9 N -0.59 -14.53 2.61 -175.40 -0.46 -14.99 16 10 C 0.17 3.85 5.25 -5.20 -0.03 3.82 16 11 C -0.13 -2.78 5.02 -30.19 -0.15 -2.93 16 12 C -0.12 -2.24 5.33 -28.41 -0.15 -2.39 16 13 C 0.16 3.10 2.22 -68.39 -0.15 2.95 16 14 H 0.10 2.58 6.26 -51.93 -0.33 2.26 16 15 N -0.71 -12.23 4.97 -55.30 -0.27 -12.51 16 16 C 0.59 10.68 7.77 -12.47 -0.10 10.58 16 17 O -0.53 -11.43 16.53 5.28 0.09 -11.34 16 18 C -0.09 -1.37 6.99 -83.55 -0.58 -1.96 16 19 C 0.09 1.03 11.27 -16.84 -0.19 0.84 16 20 N -0.36 -3.62 3.69 -61.07 -0.23 -3.85 16 21 C 0.15 0.89 6.82 -4.05 -0.03 0.86 16 22 C -0.18 -1.04 5.93 -90.62 -0.54 -1.57 16 23 C -0.18 -0.86 10.18 -26.73 -0.27 -1.14 16 24 C -0.17 -0.68 10.25 -26.73 -0.27 -0.95 16 25 N -0.07 -0.89 13.48 60.35 0.81 -0.08 16 26 N -0.21 -3.03 12.04 32.85 0.40 -2.63 16 27 C -0.15 -3.04 5.97 -25.02 -0.15 -3.19 16 28 C 0.16 3.45 5.13 -4.93 -0.03 3.42 16 29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 31 H 0.09 2.35 6.05 -51.93 -0.31 2.04 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 2.60 5.29 -51.93 -0.27 2.32 16 34 H 0.06 1.12 6.28 -51.93 -0.33 0.79 16 35 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 36 H 0.40 5.98 8.16 -40.82 -0.33 5.65 16 37 H 0.20 1.77 8.06 -52.48 -0.42 1.35 16 38 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.11 0.35 7.82 -51.93 -0.41 -0.05 16 40 H 0.12 0.94 7.94 -51.93 -0.41 0.53 16 41 H 0.10 0.40 8.03 -51.93 -0.42 -0.01 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 46 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 48 H 0.03 0.56 6.89 -51.93 -0.36 0.20 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -32.36 384.27 -8.59 -40.95 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.34 Total: 5.05 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -2.87 Total: 1.41 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.77 Total: -58.81 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.36 -8.59 -40.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052826735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.936 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds