Wall clock time and date at job start Tue Mar 31 2020 18:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99778 * 2 1 4 4 H 1.48496 * 109.46904 * 269.99539 * 3 2 1 5 5 H 1.48494 * 109.47399 * 29.99822 * 3 2 1 6 6 H 1.48507 * 109.46979 * 150.00042 * 3 2 1 7 7 C 1.38817 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99522 * 160.13234 * 7 2 1 9 9 N 1.36933 * 120.00031 * 340.41436 * 7 2 1 10 10 C 1.50170 * 120.53573 * 336.76561 * 9 7 2 11 11 C 1.46242 * 107.53356 * 109.56692 * 10 9 7 12 12 C 1.52519 * 114.27692 * 58.40698 * 11 10 9 13 13 C 1.50120 * 105.41545 * 270.59397 * 12 11 10 14 14 H 1.08996 * 109.21030 * 337.38553 * 13 12 11 15 15 N 1.46506 * 109.20972 * 218.02698 * 13 12 11 16 16 C 1.34776 * 119.99805 * 154.99506 * 15 13 12 17 17 O 1.21596 * 120.00242 * 0.02562 * 16 15 13 18 18 C 1.47528 * 119.99787 * 180.02562 * 16 15 13 19 19 C 1.36588 * 125.76999 * 179.71928 * 18 16 15 20 20 N 1.34820 * 106.84159 * 179.90071 * 19 18 16 21 21 C 1.46495 * 126.59530 * 180.13531 * 20 19 18 22 22 C 1.52995 * 109.47302 * 125.24396 * 21 20 19 23 23 C 1.53005 * 117.50016 * 243.61830 * 22 21 20 24 24 C 1.53003 * 117.50166 * 174.99502 * 22 21 20 25 25 N 1.40216 * 106.80592 * 0.35457 * 20 19 18 26 26 N 1.28754 * 108.36682 * 359.77485 * 25 20 19 27 27 C 1.54844 * 110.81897 * 97.68509 * 13 12 11 28 28 C 1.43426 * 120.53767 * 156.48703 * 9 7 2 29 29 H 0.96994 * 119.99966 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.84452 * 229.07447 * 10 9 7 31 31 H 1.09000 * 109.84581 * 350.05934 * 10 9 7 32 32 H 1.08997 * 108.51728 * 179.64998 * 11 10 9 33 33 H 1.08999 * 108.52073 * 297.32390 * 11 10 9 34 34 H 1.09004 * 110.24820 * 29.56681 * 12 11 10 35 35 H 1.08997 * 110.24898 * 151.47728 * 12 11 10 36 36 H 0.96996 * 119.99908 * 335.00214 * 15 13 12 37 37 H 1.08003 * 126.58266 * 0.04386 * 19 18 16 38 38 H 1.08999 * 109.46631 * 245.24216 * 21 20 19 39 39 H 1.08995 * 109.47425 * 5.24041 * 21 20 19 40 40 H 1.09005 * 115.55086 * 29.32583 * 22 21 20 41 41 H 1.09001 * 117.49330 * 359.97438 * 23 22 21 42 42 H 1.08997 * 117.49685 * 145.02111 * 23 22 21 43 43 H 1.08998 * 117.50124 * 214.97765 * 24 22 21 44 44 H 1.09003 * 117.49301 * 359.97438 * 24 22 21 45 45 H 1.08999 * 109.35974 * 81.33846 * 27 13 12 46 46 H 1.08993 * 109.36178 * 200.92888 * 27 13 12 47 47 H 1.09002 * 108.16374 * 33.30193 * 28 9 7 48 48 H 1.08998 * 108.16060 * 149.87454 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0421 -1.2300 -0.3173 9 7 1.3851 -2.3536 0.3986 10 6 0.1853 -2.2979 1.3000 11 6 -0.9806 -2.6839 0.5060 12 6 -0.8819 -4.0715 -0.1193 13 6 -0.2302 -3.8618 -1.4552 14 1 -0.3804 -2.8289 -1.7694 15 7 -0.8447 -4.7584 -2.4374 16 6 -0.8200 -4.4417 -3.7472 17 8 -0.2872 -3.4120 -4.1138 18 6 -1.4393 -5.3444 -4.7362 19 6 -1.4871 -5.1380 -6.0856 20 7 -2.1339 -6.1936 -6.6195 21 6 -2.4227 -6.4143 -8.0386 22 6 -1.8734 -7.7772 -8.4649 23 6 -0.7637 -7.7937 -9.5181 24 6 -2.1772 -8.2474 -9.8888 25 7 -2.4815 -7.0370 -5.5546 26 7 -2.0570 -6.5059 -4.4612 27 6 1.2885 -4.1542 -1.3787 28 6 1.8619 -3.6320 -0.0435 29 1 -0.4850 0.8400 -0.0004 30 1 0.3138 -2.9922 2.1304 31 1 0.0550 -1.2848 1.6804 32 1 -1.8613 -2.6549 1.1476 33 1 -1.1118 -1.9547 -0.2935 34 1 -0.2672 -4.7225 0.5024 35 1 -1.8762 -4.5000 -0.2452 36 1 -1.2695 -5.5800 -2.1451 37 1 -1.0822 -4.2927 -6.6222 38 1 -3.5007 -6.3911 -8.1978 39 1 -1.9509 -5.6309 -8.6316 40 1 -1.8359 -8.5348 -7.6820 41 1 -0.4254 -6.8335 -9.9076 42 1 0.0041 -8.5620 -9.4282 43 1 -2.3391 -9.3142 -10.0429 44 1 -2.7687 -7.5858 -10.5218 45 1 1.4534 -5.2294 -1.4487 46 1 1.7941 -3.6585 -2.2073 47 1 2.9457 -3.5741 -0.1445 48 1 1.6371 -4.3649 0.7313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052826735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:41 Heat of formation + Delta-G solvation = 95.993217 kcal Electronic energy + Delta-G solvation = -28721.917700 eV Core-core repulsion = 24815.063868 eV Total energy + Delta-G solvation = -3906.853832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.26070 -40.82483 -39.20834 -38.62468 -36.25360 -35.15627 -33.95295 -33.30712 -32.27625 -31.33103 -28.94407 -27.90753 -25.79388 -25.32202 -24.06063 -23.43873 -23.26543 -22.19046 -21.80290 -20.92558 -20.72401 -19.13422 -18.55813 -17.46850 -17.26232 -17.09160 -16.86389 -16.25621 -16.02746 -15.75046 -15.61489 -15.43389 -15.13511 -15.05007 -14.93077 -14.35914 -14.05537 -13.89674 -13.47686 -13.36212 -13.19609 -13.11080 -12.84929 -12.65241 -12.43813 -12.35432 -12.28148 -12.12653 -11.91837 -11.74161 -11.64090 -11.55639 -11.33421 -11.17461 -11.08985 -11.06061 -10.98065 -10.42293 -10.38850 -9.90110 -8.60587 -7.78675 -5.18564 0.11606 0.61314 1.03996 1.48053 1.49799 1.58719 2.19931 2.26108 2.57603 2.77574 3.16056 3.25417 3.34221 3.65600 3.72363 3.83759 3.90915 3.95776 4.03124 4.05250 4.12687 4.15366 4.36515 4.43039 4.51518 4.52943 4.67262 4.75961 4.77643 4.78422 4.90929 4.92664 4.98467 5.09103 5.12131 5.21659 5.21945 5.31885 5.32791 5.43167 5.44330 5.53606 5.68052 5.71244 5.81141 6.22259 6.46629 6.51413 6.90169 7.23179 7.23647 7.96638 8.45184 9.25575 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019897 B = 0.002403 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.883875 B =11647.219556 C =12265.613075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.046 4.046 3 Si 0.956 3.044 4 H -0.294 1.294 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.259 4.259 8 H 0.059 0.941 9 N -0.602 5.602 10 C 0.167 3.833 11 C -0.122 4.122 12 C -0.109 4.109 13 C 0.169 3.831 14 H 0.048 0.952 15 N -0.702 5.702 16 C 0.594 3.406 17 O -0.576 6.576 18 C -0.120 4.120 19 C 0.107 3.893 20 N -0.344 5.344 21 C 0.146 3.854 22 C -0.190 4.190 23 C -0.180 4.180 24 C -0.150 4.150 25 N -0.081 5.081 26 N -0.221 5.221 27 C -0.140 4.140 28 C 0.156 3.844 29 H 0.246 0.754 30 H 0.032 0.968 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.412 0.588 37 H 0.231 0.769 38 H 0.120 0.880 39 H 0.138 0.862 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.119 0.881 45 H 0.076 0.924 46 H 0.023 0.977 47 H 0.028 0.972 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 -17.265 -17.524 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.242 4.242 3 Si 0.786 3.214 4 H -0.222 1.222 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.389 4.389 8 H 0.077 0.923 9 N -0.323 5.323 10 C 0.044 3.956 11 C -0.161 4.161 12 C -0.147 4.147 13 C 0.065 3.935 14 H 0.066 0.934 15 N -0.352 5.352 16 C 0.379 3.621 17 O -0.454 6.454 18 C -0.260 4.260 19 C -0.051 4.051 20 N -0.128 5.128 21 C 0.027 3.973 22 C -0.209 4.209 23 C -0.217 4.217 24 C -0.188 4.188 25 N -0.061 5.061 26 N -0.095 5.095 27 C -0.182 4.182 28 C 0.028 3.972 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.249 0.751 37 H 0.247 0.753 38 H 0.138 0.862 39 H 0.156 0.844 40 H 0.114 0.886 41 H 0.130 0.870 42 H 0.110 0.890 43 H 0.121 0.879 44 H 0.137 0.863 45 H 0.095 0.905 46 H 0.042 0.958 47 H 0.047 0.953 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.366 -17.711 -17.379 25.883 hybrid contribution 0.709 1.712 -0.363 1.889 sum -6.657 -15.999 -17.742 24.800 Atomic orbital electron populations 1.70139 1.05868 1.25052 1.55111 1.25539 0.96049 1.00732 1.01836 0.85450 0.78294 0.80674 0.77010 1.22152 1.21749 1.19942 1.19369 0.93604 0.86751 1.39207 0.92345 1.44458 1.34082 1.01287 1.52521 1.20125 0.85477 0.99375 0.90607 1.20738 0.98346 0.95877 1.01139 1.21278 1.00632 0.98134 0.94612 1.20902 0.92419 0.92425 0.87713 0.93376 1.46146 1.57629 1.25776 1.05680 1.17174 0.78447 0.83889 0.82549 1.90836 1.47288 1.26898 1.80411 1.21383 1.12700 0.97682 0.94189 1.23774 0.93976 0.93743 0.93576 1.50686 1.37377 1.14504 1.10258 1.22081 1.04288 0.98614 0.72344 1.22430 1.06395 0.97533 0.94535 1.23241 0.92469 1.04284 1.01656 1.23093 0.98351 1.02975 0.94355 1.81841 1.21477 1.15020 0.87775 1.74588 1.07936 1.06474 1.20498 1.23099 0.95010 0.99961 1.00166 1.20384 0.96124 0.87541 0.93185 0.94503 0.94953 0.92420 0.93604 0.92124 0.89810 0.90096 0.75072 0.75272 0.86186 0.84423 0.88550 0.87002 0.88973 0.87946 0.86321 0.90523 0.95771 0.95323 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.31 9.43 21.65 0.20 -53.10 16 2 C -0.05 -2.59 4.91 84.86 0.42 -2.17 16 3 Si 0.96 46.33 29.60 68.60 2.03 48.36 16 4 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.26 -14.54 9.62 84.04 0.81 -13.74 16 8 H 0.06 3.30 7.89 -2.91 -0.02 3.28 16 9 N -0.60 -29.99 2.61 -708.83 -1.85 -31.84 16 10 C 0.17 7.78 5.25 83.58 0.44 8.22 16 11 C -0.12 -5.22 5.02 28.35 0.14 -5.08 16 12 C -0.11 -3.80 5.33 29.51 0.16 -3.65 16 13 C 0.17 6.74 2.22 44.69 0.10 6.84 16 14 H 0.05 2.51 6.26 -2.39 -0.01 2.50 16 15 N -0.70 -23.95 4.97 -447.12 -2.22 -26.17 16 16 C 0.59 21.58 7.77 86.69 0.67 22.26 16 17 O -0.58 -25.63 16.53 -4.02 -0.07 -25.70 16 18 C -0.12 -3.48 6.99 40.82 0.29 -3.19 16 19 C 0.11 2.27 11.27 83.85 0.95 3.22 16 20 N -0.34 -6.20 3.69 -347.12 -1.28 -7.48 16 21 C 0.15 1.24 6.82 86.38 0.59 1.83 16 22 C -0.19 -1.86 5.93 -10.79 -0.06 -1.92 16 23 C -0.18 -1.38 10.18 30.60 0.31 -1.06 16 24 C -0.15 -0.84 10.25 30.60 0.31 -0.53 16 25 N -0.08 -2.01 13.48 37.02 0.50 -1.51 16 26 N -0.22 -6.31 12.04 -50.00 -0.60 -6.91 16 27 C -0.14 -5.61 5.97 31.70 0.19 -5.42 16 28 C 0.16 6.56 5.13 87.43 0.45 7.01 16 29 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.03 1.33 8.13 -2.38 -0.02 1.31 16 31 H 0.06 3.06 6.05 -2.39 -0.01 3.05 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 3.18 5.29 -2.39 -0.01 3.16 16 34 H 0.08 2.64 6.28 -2.39 -0.01 2.62 16 35 H 0.08 2.43 7.86 -2.39 -0.02 2.41 16 36 H 0.41 11.81 8.16 -92.71 -0.76 11.05 16 37 H 0.23 3.47 8.06 -2.91 -0.02 3.45 16 38 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.14 0.34 7.82 -2.39 -0.02 0.33 16 40 H 0.10 1.44 7.94 -2.38 -0.02 1.42 16 41 H 0.11 0.58 8.03 -2.39 -0.02 0.56 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 45 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 46 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.03 1.21 7.99 -2.39 -0.02 1.19 16 48 H 0.06 2.09 6.89 -2.39 -0.02 2.07 16 Total: -1.00 -74.21 384.27 2.69 -71.53 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.22 Total: 20.21 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 5.75 Total: 12.61 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -5.25 Total: -127.01 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.07 Total: -25.70 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -74.21 2.69 -71.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052826735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.521 kcal (2) G-P(sol) polarization free energy of solvation -74.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds