Wall clock time and date at job start Tue Mar 31 2020 18:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00396 * 2 1 4 4 H 1.48494 * 109.46869 * 275.57549 * 3 2 1 5 5 H 1.48506 * 109.46855 * 35.56810 * 3 2 1 6 6 H 1.48500 * 109.47364 * 155.57112 * 3 2 1 7 7 C 1.38816 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99756 * 336.34793 * 7 2 1 9 9 N 1.36938 * 120.00100 * 156.34504 * 7 2 1 10 10 C 1.43432 * 120.53447 * 320.20877 * 9 7 2 11 11 C 1.54909 * 116.07937 * 271.58987 * 10 9 7 12 12 C 1.54842 * 110.13903 * 318.64273 * 11 10 9 13 13 C 1.50131 * 110.81740 * 321.13270 * 12 11 10 14 14 H 1.08997 * 110.24832 * 338.71444 * 13 12 11 15 15 N 1.46503 * 110.36638 * 216.71818 * 13 12 11 16 16 C 1.34782 * 119.99482 * 158.95046 * 15 13 12 17 17 O 1.21283 * 120.00076 * 359.97438 * 16 15 13 18 18 C 1.50701 * 119.99708 * 180.02562 * 16 15 13 19 19 H 1.08999 * 109.45756 * 300.03260 * 18 16 15 20 20 C 1.53110 * 109.45549 * 180.02562 * 18 16 15 21 21 C 1.53423 * 109.57191 * 169.89936 * 20 18 16 22 22 C 1.50604 * 108.33116 * 49.83212 * 21 20 18 23 23 N 1.32904 * 129.16193 * 163.38532 * 22 21 20 24 24 N 1.29025 * 108.63411 * 180.20860 * 23 22 21 25 25 N 1.29108 * 110.25793 * 359.97438 * 24 23 22 26 26 H 0.96998 * 126.00824 * 179.90648 * 25 24 23 27 27 C 1.34400 * 107.98504 * 359.93141 * 25 24 23 28 28 C 1.50539 * 129.25271 * 180.15008 * 27 25 24 29 29 C 1.52528 * 105.41386 * 97.68723 * 13 12 11 30 30 C 1.46239 * 114.27558 * 270.59340 * 29 13 12 31 31 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 32 32 H 1.08996 * 108.15755 * 149.87377 * 10 9 7 33 33 H 1.08998 * 108.15947 * 33.30409 * 10 9 7 34 34 H 1.09001 * 109.35756 * 198.43782 * 11 10 9 35 35 H 1.08991 * 109.24643 * 78.77676 * 11 10 9 36 36 H 1.08995 * 109.20711 * 200.78942 * 12 11 10 37 37 H 1.09004 * 109.17394 * 81.45326 * 12 11 10 38 38 H 0.96998 * 120.00239 * 338.95220 * 15 13 12 39 39 H 1.08998 * 109.45742 * 289.94280 * 20 18 16 40 40 H 1.09005 * 109.44956 * 49.87917 * 20 18 16 41 41 H 1.08998 * 109.71119 * 290.10987 * 21 20 18 42 42 H 1.08999 * 109.71486 * 169.54928 * 21 20 18 43 43 H 1.08999 * 109.69172 * 43.86701 * 28 27 25 44 44 H 1.08995 * 109.69023 * 283.27985 * 28 27 25 45 45 H 1.09000 * 108.52407 * 149.34982 * 29 13 12 46 46 H 1.08998 * 108.40119 * 31.73884 * 29 13 12 47 47 H 1.08998 * 109.84832 * 177.91369 * 30 29 13 48 48 H 1.08998 * 109.84188 * 298.90162 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3800 2.1143 -1.3934 5 1 1.5116 2.6158 0.8144 6 1 3.6018 1.4090 0.5790 7 6 2.0103 -1.2022 0.0005 8 1 1.5383 -2.0980 0.3762 9 7 3.2934 -1.2522 -0.4753 10 6 3.6669 -0.5085 -1.6435 11 6 3.4693 -1.2282 -3.0009 12 6 3.9073 -2.7091 -2.8880 13 6 5.1379 -2.8381 -2.0378 14 1 5.6683 -1.8869 -1.9950 15 7 6.0162 -3.8842 -2.5675 16 6 7.3249 -3.8921 -2.2455 17 8 7.7756 -3.0330 -1.5177 18 6 8.2285 -4.9678 -2.7909 19 1 7.8702 -5.9436 -2.4631 20 6 9.6531 -4.7470 -2.2751 21 6 10.5180 -5.9677 -2.6157 22 6 10.3328 -6.2868 -4.0759 23 7 11.0811 -7.0448 -4.8708 24 7 10.5611 -7.0425 -6.0516 25 7 9.4964 -6.3124 -6.0699 26 1 8.9287 -6.1513 -6.8396 27 6 9.3134 -5.8146 -4.8350 28 6 8.2229 -4.9113 -4.3241 29 6 4.6338 -3.2244 -0.6510 30 6 4.3319 -2.0870 0.2173 31 1 -0.4850 0.8400 0.0004 32 1 4.7190 -0.2384 -1.5522 33 1 3.0853 0.4132 -1.6598 34 1 4.0685 -0.7313 -3.7639 35 1 2.4171 -1.1830 -3.2817 36 1 4.1174 -3.0978 -3.8843 37 1 3.0996 -3.2881 -2.4401 38 1 5.6558 -4.5711 -3.1500 39 1 10.0762 -3.8595 -2.7456 40 1 9.6304 -4.6086 -1.1941 41 1 10.2062 -6.8194 -2.0112 42 1 11.5661 -5.7420 -2.4192 43 1 7.2581 -5.2509 -4.7008 44 1 8.4077 -3.8892 -4.6546 45 1 5.3920 -3.8389 -0.1656 46 1 3.7289 -3.8207 -0.7675 47 1 3.9444 -2.4428 1.1719 48 1 5.2334 -1.4962 0.3800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052866362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:07 Heat of formation + Delta-G solvation = 75.501200 kcal Electronic energy + Delta-G solvation = -29301.192326 eV Core-core repulsion = 25393.449894 eV Total energy + Delta-G solvation = -3907.742432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.84318 -40.35764 -38.34476 -36.75950 -34.91338 -34.28503 -32.55024 -31.91979 -31.15785 -30.67588 -30.14452 -26.42125 -25.24422 -24.33948 -23.44878 -23.27650 -23.04694 -20.90344 -20.27776 -19.85508 -19.48939 -18.56664 -17.23805 -16.62303 -16.45166 -16.31858 -15.78651 -15.10537 -14.64068 -14.53594 -14.45340 -14.27571 -14.10410 -14.00363 -13.85334 -13.35392 -12.96059 -12.65581 -12.51922 -12.36176 -12.13679 -11.98833 -11.84298 -11.70589 -11.58821 -11.43264 -11.13717 -10.98216 -10.78236 -10.70824 -10.57492 -10.53294 -10.16979 -10.00067 -9.77848 -9.70542 -9.49349 -9.30374 -8.93444 -8.46565 -6.76574 -6.02900 -3.45167 1.11858 2.12913 2.21162 2.58801 3.08095 3.31844 3.46968 3.54771 3.78229 4.05916 4.27226 4.32262 4.51440 4.52402 4.65823 4.82588 4.88300 4.90835 5.00669 5.12595 5.15813 5.26242 5.28805 5.29317 5.40177 5.50203 5.60597 5.71642 5.81209 5.84463 5.85910 5.87219 5.96261 6.13688 6.21353 6.26521 6.39970 6.43349 6.47951 6.63499 6.72733 6.73556 6.81930 6.85998 6.95850 7.48640 8.04969 8.07305 8.18497 8.34527 9.00220 9.70004 10.15571 11.12545 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029751 B = 0.002427 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.915604 B =11535.818246 C =11863.608809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.040 3.960 3 Si 0.876 3.124 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.267 4.267 8 H 0.075 0.925 9 N -0.600 5.600 10 C 0.145 3.855 11 C -0.137 4.137 12 C -0.112 4.112 13 C 0.148 3.852 14 H 0.093 0.907 15 N -0.722 5.722 16 C 0.516 3.484 17 O -0.529 6.529 18 C -0.102 4.102 19 H 0.105 0.895 20 C -0.101 4.101 21 C -0.035 4.035 22 C -0.014 4.014 23 N -0.258 5.258 24 N -0.090 5.090 25 N -0.382 5.382 26 H 0.449 0.551 27 C -0.012 4.012 28 C -0.038 4.038 29 C -0.136 4.136 30 C 0.139 3.861 31 H 0.263 0.737 32 H 0.029 0.971 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.395 0.605 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.047 0.953 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.541 -12.162 -11.018 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.193 1.193 7 C -0.395 4.395 8 H 0.092 0.908 9 N -0.323 5.323 10 C 0.017 3.983 11 C -0.178 4.178 12 C -0.150 4.150 13 C 0.045 3.955 14 H 0.111 0.889 15 N -0.372 5.372 16 C 0.301 3.699 17 O -0.405 6.405 18 C -0.124 4.124 19 H 0.123 0.877 20 C -0.139 4.139 21 C -0.074 4.074 22 C -0.153 4.153 23 N -0.124 5.124 24 N -0.069 5.069 25 N -0.101 5.101 26 H 0.294 0.706 27 C -0.147 4.147 28 C -0.077 4.077 29 C -0.176 4.176 30 C 0.014 3.986 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.228 0.772 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 17.740 -12.388 -11.180 24.355 hybrid contribution -1.043 1.303 -0.490 1.739 sum 16.697 -11.085 -11.669 23.191 Atomic orbital electron populations 1.69893 1.06085 1.26783 1.51036 1.25538 0.95013 0.97857 0.97739 0.86922 0.80848 0.84654 0.76990 1.21414 1.22953 1.19350 1.18690 0.86913 0.94184 1.39758 0.90781 1.44200 1.07706 1.55870 1.24537 1.20690 0.97033 0.94189 0.86348 1.22745 1.01097 0.94413 0.99541 1.21684 0.96529 0.98990 0.97829 1.20392 0.90301 0.90710 0.94140 0.88927 1.46317 1.08536 1.31239 1.51119 1.20317 0.82522 0.85998 0.81089 1.90743 1.75138 1.38158 1.36433 1.21381 0.97052 0.99812 0.94196 0.87723 1.21485 0.91616 0.97659 1.03159 1.20042 1.01744 0.98511 0.87102 1.21815 0.94106 1.00596 0.98820 1.74845 1.23648 1.17505 0.96390 1.78593 0.97742 1.13740 1.16783 1.44706 1.21093 1.33400 1.10894 0.70582 1.21787 1.02352 1.04508 0.86089 1.20136 0.95009 0.98237 0.94362 1.21291 1.00138 1.00472 0.95686 1.20376 0.91824 0.91502 0.94850 0.92728 0.95241 0.93955 0.93205 0.91704 0.93413 0.90676 0.77157 0.90624 0.89070 0.89549 0.89158 0.89266 0.88726 0.93412 0.91778 0.91338 0.94759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.97 55.49 0.78 -25.97 16 2 C 0.04 1.11 5.28 -17.43 -0.09 1.02 16 3 Si 0.88 22.03 25.26 -169.99 -4.29 17.73 16 4 H -0.29 -7.01 6.73 56.52 0.38 -6.63 16 5 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.27 -7.18 9.92 -15.06 -0.15 -7.33 16 8 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 9 N -0.60 -13.62 2.14 -175.08 -0.37 -14.00 16 10 C 0.15 3.04 4.21 -4.66 -0.02 3.02 16 11 C -0.14 -2.36 6.41 -24.75 -0.16 -2.52 16 12 C -0.11 -1.61 5.30 -27.19 -0.14 -1.76 16 13 C 0.15 2.10 2.17 -69.60 -0.15 1.94 16 14 H 0.09 1.54 5.82 -51.93 -0.30 1.24 16 15 N -0.72 -7.39 4.92 -55.44 -0.27 -7.66 16 16 C 0.52 5.57 6.99 -10.98 -0.08 5.49 16 17 O -0.53 -8.05 15.53 5.56 0.09 -7.96 16 18 C -0.10 -0.72 2.50 -91.49 -0.23 -0.95 16 19 H 0.10 0.61 8.12 -51.93 -0.42 0.19 16 20 C -0.10 -0.77 4.64 -26.46 -0.12 -0.89 16 21 C -0.03 -0.25 6.30 -27.71 -0.17 -0.43 16 22 C -0.01 -0.13 7.11 -83.12 -0.59 -0.72 16 23 N -0.26 -3.01 12.40 33.16 0.41 -2.59 16 24 N -0.09 -0.94 13.40 60.35 0.81 -0.13 16 25 N -0.38 -2.59 6.97 33.39 0.23 -2.36 16 26 H 0.45 1.26 8.96 -190.07 -1.70 -0.44 16 27 C -0.01 -0.08 7.15 -82.49 -0.59 -0.67 16 28 C -0.04 -0.20 5.43 -27.74 -0.15 -0.35 16 29 C -0.14 -2.18 4.92 -30.19 -0.15 -2.32 16 30 C 0.14 2.68 6.11 -5.20 -0.03 2.65 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.03 0.58 6.89 -51.93 -0.36 0.22 16 33 H 0.04 0.99 3.40 -51.93 -0.18 0.82 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 0.54 7.81 -51.93 -0.41 0.14 16 37 H 0.07 1.21 6.82 -51.93 -0.35 0.85 16 38 H 0.39 2.82 8.13 -40.82 -0.33 2.49 16 39 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 40 H 0.09 0.76 7.76 -51.93 -0.40 0.36 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.28 7.90 -51.93 -0.41 -0.13 16 44 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 45 H 0.05 0.72 7.90 -51.93 -0.41 0.31 16 46 H 0.06 1.06 6.92 -51.93 -0.36 0.70 16 47 H 0.07 1.33 7.99 -51.93 -0.42 0.92 16 48 H 0.03 0.66 8.12 -51.93 -0.42 0.24 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -34.46 367.68 -8.50 -42.96 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -8.59 Total: -1.75 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.83 Total: -3.82 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 1.58 Total: -52.70 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.09 Total: -7.96 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.29 Total: 17.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.46 -8.50 -42.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052866362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.465 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds