Wall clock time and date at job start Tue Mar 31 2020 18:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00396 * 2 1 4 4 H 1.48494 * 109.46869 * 275.57549 * 3 2 1 5 5 H 1.48506 * 109.46855 * 35.56810 * 3 2 1 6 6 H 1.48500 * 109.47364 * 155.57112 * 3 2 1 7 7 C 1.38816 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99756 * 336.34793 * 7 2 1 9 9 N 1.36938 * 120.00100 * 156.34504 * 7 2 1 10 10 C 1.43432 * 120.53447 * 320.20877 * 9 7 2 11 11 C 1.54909 * 116.07937 * 271.58987 * 10 9 7 12 12 C 1.54842 * 110.13903 * 318.64273 * 11 10 9 13 13 C 1.50131 * 110.81740 * 321.13270 * 12 11 10 14 14 H 1.08997 * 110.24832 * 338.71444 * 13 12 11 15 15 N 1.46503 * 110.36638 * 216.71818 * 13 12 11 16 16 C 1.34782 * 119.99482 * 158.95046 * 15 13 12 17 17 O 1.21283 * 120.00076 * 359.97438 * 16 15 13 18 18 C 1.50701 * 119.99708 * 180.02562 * 16 15 13 19 19 H 1.08999 * 109.45756 * 300.03260 * 18 16 15 20 20 C 1.53110 * 109.45549 * 180.02562 * 18 16 15 21 21 C 1.53423 * 109.57191 * 169.89936 * 20 18 16 22 22 C 1.50604 * 108.33116 * 49.83212 * 21 20 18 23 23 N 1.32904 * 129.16193 * 163.38532 * 22 21 20 24 24 N 1.29025 * 108.63411 * 180.20860 * 23 22 21 25 25 N 1.29108 * 110.25793 * 359.97438 * 24 23 22 26 26 H 0.96998 * 126.00824 * 179.90648 * 25 24 23 27 27 C 1.34400 * 107.98504 * 359.93141 * 25 24 23 28 28 C 1.50539 * 129.25271 * 180.15008 * 27 25 24 29 29 C 1.52528 * 105.41386 * 97.68723 * 13 12 11 30 30 C 1.46239 * 114.27558 * 270.59340 * 29 13 12 31 31 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 32 32 H 1.08996 * 108.15755 * 149.87377 * 10 9 7 33 33 H 1.08998 * 108.15947 * 33.30409 * 10 9 7 34 34 H 1.09001 * 109.35756 * 198.43782 * 11 10 9 35 35 H 1.08991 * 109.24643 * 78.77676 * 11 10 9 36 36 H 1.08995 * 109.20711 * 200.78942 * 12 11 10 37 37 H 1.09004 * 109.17394 * 81.45326 * 12 11 10 38 38 H 0.96998 * 120.00239 * 338.95220 * 15 13 12 39 39 H 1.08998 * 109.45742 * 289.94280 * 20 18 16 40 40 H 1.09005 * 109.44956 * 49.87917 * 20 18 16 41 41 H 1.08998 * 109.71119 * 290.10987 * 21 20 18 42 42 H 1.08999 * 109.71486 * 169.54928 * 21 20 18 43 43 H 1.08999 * 109.69172 * 43.86701 * 28 27 25 44 44 H 1.08995 * 109.69023 * 283.27985 * 28 27 25 45 45 H 1.09000 * 108.52407 * 149.34982 * 29 13 12 46 46 H 1.08998 * 108.40119 * 31.73884 * 29 13 12 47 47 H 1.08998 * 109.84832 * 177.91369 * 30 29 13 48 48 H 1.08998 * 109.84188 * 298.90162 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3800 2.1143 -1.3934 5 1 1.5116 2.6158 0.8144 6 1 3.6018 1.4090 0.5790 7 6 2.0103 -1.2022 0.0005 8 1 1.5383 -2.0980 0.3762 9 7 3.2934 -1.2522 -0.4753 10 6 3.6669 -0.5085 -1.6435 11 6 3.4693 -1.2282 -3.0009 12 6 3.9073 -2.7091 -2.8880 13 6 5.1379 -2.8381 -2.0378 14 1 5.6683 -1.8869 -1.9950 15 7 6.0162 -3.8842 -2.5675 16 6 7.3249 -3.8921 -2.2455 17 8 7.7756 -3.0330 -1.5177 18 6 8.2285 -4.9678 -2.7909 19 1 7.8702 -5.9436 -2.4631 20 6 9.6531 -4.7470 -2.2751 21 6 10.5180 -5.9677 -2.6157 22 6 10.3328 -6.2868 -4.0759 23 7 11.0811 -7.0448 -4.8708 24 7 10.5611 -7.0425 -6.0516 25 7 9.4964 -6.3124 -6.0699 26 1 8.9287 -6.1513 -6.8396 27 6 9.3134 -5.8146 -4.8350 28 6 8.2229 -4.9113 -4.3241 29 6 4.6338 -3.2244 -0.6510 30 6 4.3319 -2.0870 0.2173 31 1 -0.4850 0.8400 0.0004 32 1 4.7190 -0.2384 -1.5522 33 1 3.0853 0.4132 -1.6598 34 1 4.0685 -0.7313 -3.7639 35 1 2.4171 -1.1830 -3.2817 36 1 4.1174 -3.0978 -3.8843 37 1 3.0996 -3.2881 -2.4401 38 1 5.6558 -4.5711 -3.1500 39 1 10.0762 -3.8595 -2.7456 40 1 9.6304 -4.6086 -1.1941 41 1 10.2062 -6.8194 -2.0112 42 1 11.5661 -5.7420 -2.4192 43 1 7.2581 -5.2509 -4.7008 44 1 8.4077 -3.8892 -4.6546 45 1 5.3920 -3.8389 -0.1656 46 1 3.7289 -3.8207 -0.7675 47 1 3.9444 -2.4428 1.1719 48 1 5.2334 -1.4962 0.3800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052866362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:07 Heat of formation + Delta-G solvation = 50.295034 kcal Electronic energy + Delta-G solvation = -29302.285348 eV Core-core repulsion = 25393.449894 eV Total energy + Delta-G solvation = -3908.835454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.46358 -41.29882 -39.60691 -37.54533 -36.27825 -34.93074 -34.15691 -33.38853 -32.54404 -31.28208 -31.03463 -28.02931 -26.18160 -25.37056 -25.03948 -24.06650 -23.78632 -21.85309 -21.47040 -21.27157 -20.31101 -19.16786 -18.45371 -17.92902 -17.73237 -17.22890 -16.74871 -16.43799 -16.21852 -15.54939 -15.44697 -15.18589 -14.98802 -14.86891 -14.72172 -14.63574 -14.35256 -14.25582 -13.79536 -13.50511 -13.18100 -13.10021 -13.03749 -12.74210 -12.60618 -12.48039 -12.26315 -12.18544 -12.03127 -11.95934 -11.84921 -11.59519 -11.55305 -11.32919 -11.30960 -11.19710 -10.68940 -10.53776 -9.96456 -9.90008 -8.66177 -8.19913 -5.57755 0.53710 1.30336 1.41070 1.45680 1.52575 1.61520 1.89182 2.23546 2.43004 3.05199 3.22304 3.31978 3.49328 3.71055 3.79563 3.87838 3.96433 3.99027 4.07425 4.19709 4.29066 4.40364 4.43589 4.45966 4.50923 4.52532 4.60495 4.73257 4.81599 4.86741 4.89107 4.95988 5.00733 5.05522 5.09525 5.15626 5.16841 5.23958 5.26195 5.36746 5.38684 5.49601 5.51925 5.70529 5.98433 5.99325 6.19459 6.69116 7.03550 7.38382 7.40271 7.65406 8.13295 8.99738 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029751 B = 0.002427 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.915604 B =11535.818246 C =11863.608809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.013 4.013 3 Si 0.936 3.064 4 H -0.276 1.276 5 H -0.309 1.309 6 H -0.267 1.267 7 C -0.249 4.249 8 H 0.042 0.958 9 N -0.611 5.611 10 C 0.137 3.863 11 C -0.133 4.133 12 C -0.103 4.103 13 C 0.160 3.840 14 H 0.073 0.927 15 N -0.707 5.707 16 C 0.519 3.481 17 O -0.575 6.575 18 C -0.092 4.092 19 H 0.127 0.873 20 C -0.097 4.097 21 C -0.029 4.029 22 C -0.032 4.032 23 N -0.296 5.296 24 N -0.119 5.119 25 N -0.363 5.363 26 H 0.465 0.535 27 C 0.003 3.997 28 C -0.032 4.032 29 C -0.129 4.129 30 C 0.139 3.861 31 H 0.262 0.738 32 H 0.043 0.957 33 H 0.016 0.984 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.415 0.585 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.125 0.875 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.795 -12.970 -12.946 25.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.210 4.210 3 Si 0.765 3.235 4 H -0.203 1.203 5 H -0.237 1.237 6 H -0.192 1.192 7 C -0.379 4.379 8 H 0.059 0.941 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.174 4.174 12 C -0.141 4.141 13 C 0.055 3.945 14 H 0.092 0.908 15 N -0.359 5.359 16 C 0.306 3.694 17 O -0.453 6.453 18 C -0.114 4.114 19 H 0.145 0.855 20 C -0.135 4.135 21 C -0.068 4.068 22 C -0.173 4.173 23 N -0.161 5.161 24 N -0.097 5.097 25 N -0.085 5.085 26 H 0.315 0.685 27 C -0.134 4.134 28 C -0.072 4.072 29 C -0.169 4.169 30 C 0.016 3.984 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.253 0.747 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.116 0.884 42 H 0.107 0.893 43 H 0.143 0.857 44 H 0.117 0.883 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 19.026 -13.241 -13.177 26.664 hybrid contribution -1.405 1.506 0.142 2.065 sum 17.621 -11.736 -13.035 24.862 Atomic orbital electron populations 1.69997 1.07510 1.27333 1.53841 1.26066 0.95512 1.00766 0.98668 0.85947 0.79289 0.80976 0.77251 1.20266 1.23735 1.19172 1.18568 0.88451 0.92844 1.38070 0.94070 1.44297 1.06883 1.56516 1.25766 1.20807 0.97111 0.93530 0.87556 1.22649 1.00603 0.96440 0.97663 1.21558 0.95790 0.96664 1.00091 1.19989 0.90469 0.91065 0.92974 0.90847 1.46058 1.07991 1.30788 1.51019 1.20860 0.82581 0.85851 0.80073 1.90740 1.75929 1.40136 1.38534 1.21321 0.95519 0.99191 0.95340 0.85521 1.21406 0.92210 0.97381 1.02509 1.20024 1.01712 0.98625 0.86451 1.22180 0.94611 1.00873 0.99644 1.74800 1.25064 1.19015 0.97193 1.78523 0.99199 1.15305 1.16685 1.44708 1.20266 1.32019 1.11501 0.68514 1.21970 1.01953 1.03662 0.85773 1.20218 0.95997 0.98171 0.92780 1.21135 1.00277 0.98831 0.96618 1.20457 0.90668 0.92140 0.95157 0.92868 0.93908 0.96579 0.90193 0.93746 0.89215 0.92540 0.74749 0.91670 0.89997 0.88447 0.89272 0.85734 0.88254 0.92277 0.92386 0.92323 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.77 13.97 21.65 0.30 -57.46 16 2 C -0.01 -0.75 5.28 84.86 0.45 -0.30 16 3 Si 0.94 46.27 25.26 68.60 1.73 48.01 16 4 H -0.28 -13.00 6.73 99.48 0.67 -12.33 16 5 H -0.31 -15.47 7.11 99.48 0.71 -14.77 16 6 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.25 -13.69 9.92 84.03 0.83 -12.86 16 8 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 9 N -0.61 -27.57 2.14 -707.83 -1.51 -29.08 16 10 C 0.14 5.56 4.21 87.60 0.37 5.93 16 11 C -0.13 -4.26 6.41 31.88 0.20 -4.05 16 12 C -0.10 -2.61 5.30 30.30 0.16 -2.45 16 13 C 0.16 4.04 2.17 43.91 0.10 4.13 16 14 H 0.07 2.23 5.82 -2.39 -0.01 2.22 16 15 N -0.71 -11.44 4.92 -447.69 -2.20 -13.64 16 16 C 0.52 9.41 6.99 87.66 0.61 10.02 16 17 O -0.57 -16.26 15.53 -3.04 -0.05 -16.31 16 18 C -0.09 -0.95 2.50 -11.36 -0.03 -0.98 16 19 H 0.13 0.86 8.12 -2.39 -0.02 0.84 16 20 C -0.10 -1.27 4.64 30.77 0.14 -1.13 16 21 C -0.03 -0.37 6.30 29.96 0.19 -0.18 16 22 C -0.03 -0.53 7.11 41.75 0.30 -0.24 16 23 N -0.30 -6.59 12.40 -48.99 -0.61 -7.20 16 24 N -0.12 -2.31 13.40 37.02 0.50 -1.82 16 25 N -0.36 -3.92 6.97 -48.27 -0.34 -4.26 16 26 H 0.47 1.08 8.96 -219.68 -1.97 -0.88 16 27 C 0.00 0.04 7.15 41.50 0.30 0.34 16 28 C -0.03 -0.20 5.43 29.94 0.16 -0.04 16 29 C -0.13 -3.89 4.92 28.36 0.14 -3.75 16 30 C 0.14 5.29 6.11 83.58 0.51 5.80 16 31 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.04 1.62 6.89 -2.39 -0.02 1.60 16 33 H 0.02 0.74 3.40 -2.39 -0.01 0.73 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 1.56 7.81 -2.39 -0.02 1.54 16 37 H 0.06 1.68 6.82 -2.39 -0.02 1.67 16 38 H 0.42 3.58 8.13 -92.71 -0.75 2.83 16 39 H 0.06 1.00 8.12 -2.39 -0.02 0.98 16 40 H 0.08 1.25 7.76 -2.38 -0.02 1.24 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.12 -0.03 7.90 -2.39 -0.02 -0.04 16 44 H 0.10 0.65 8.12 -2.39 -0.02 0.63 16 45 H 0.06 1.66 7.90 -2.39 -0.02 1.64 16 46 H 0.06 1.84 6.92 -2.39 -0.02 1.82 16 47 H 0.06 2.30 7.99 -2.39 -0.02 2.28 16 48 H 0.04 1.37 8.12 -2.39 -0.02 1.35 16 Total: -1.00 -78.19 367.68 0.51 -77.68 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -1.75 Total: 3.85 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 4.43 Total: 0.23 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -3.86 Total: -113.46 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.05 Total: -16.31 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.73 Total: 48.01 kcal Total: -78.19 0.51 -77.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052866362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.975 kcal (2) G-P(sol) polarization free energy of solvation -78.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds