Wall clock time and date at job start Tue Mar 31 2020 18:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48502 * 109.47528 * 89.99982 * 3 2 1 5 5 H 1.48501 * 109.46986 * 209.99908 * 3 2 1 6 6 H 1.48502 * 109.47029 * 329.99565 * 3 2 1 7 7 C 1.38807 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99628 * 17.94877 * 7 2 1 9 9 N 1.36934 * 120.00240 * 197.94510 * 7 2 1 10 10 C 1.46924 * 120.62979 * 209.86824 * 9 7 2 11 11 C 1.52767 * 109.00680 * 233.58638 * 10 9 7 12 12 C 1.53039 * 109.38370 * 305.59117 * 11 10 9 13 13 C 1.53030 * 109.53924 * 61.23992 * 12 11 10 14 14 H 1.08998 * 109.52634 * 58.60106 * 13 12 11 15 15 C 1.53001 * 109.50003 * 178.68365 * 13 12 11 16 16 H 1.09004 * 109.49646 * 59.77198 * 15 13 12 17 17 C 1.53046 * 109.49627 * 299.67857 * 15 13 12 18 18 C 1.53044 * 109.53478 * 178.68149 * 17 15 13 19 19 C 1.53191 * 109.31516 * 61.36540 * 18 17 15 20 20 N 1.46927 * 108.77406 * 305.36164 * 19 18 17 21 21 C 1.34771 * 120.63233 * 233.58423 * 20 19 18 22 22 O 1.21616 * 120.00426 * 171.32895 * 21 20 19 23 23 C 1.47234 * 119.99704 * 351.33081 * 21 20 19 24 24 C 1.37014 * 127.18718 * 151.87971 * 23 21 20 25 25 N 1.33322 * 106.37048 * 179.84571 * 24 23 21 26 26 N 1.28515 * 109.43919 * 0.43486 * 25 24 23 27 27 N 1.28716 * 110.63821 * 359.72234 * 26 25 24 28 28 H 0.96999 * 126.03638 * 179.97438 * 27 26 25 29 29 C 1.46930 * 118.73545 * 53.61057 * 20 19 18 30 30 C 1.46925 * 120.63135 * 30.15566 * 9 7 2 31 31 H 0.96994 * 120.00072 * 174.88244 * 1 2 3 32 32 H 1.08994 * 109.59263 * 353.42043 * 10 9 7 33 33 H 1.08998 * 109.58948 * 113.84916 * 10 9 7 34 34 H 1.09005 * 109.56158 * 185.55612 * 11 10 9 35 35 H 1.09003 * 109.38603 * 65.52137 * 11 10 9 36 36 H 1.09001 * 109.45987 * 301.21735 * 12 11 10 37 37 H 1.09000 * 109.44811 * 181.25444 * 12 11 10 38 38 H 1.09003 * 109.45415 * 298.69847 * 17 15 13 39 39 H 1.08996 * 109.46242 * 58.65874 * 17 15 13 40 40 H 1.08994 * 109.49840 * 301.41257 * 18 17 15 41 41 H 1.08997 * 109.51920 * 181.33042 * 18 17 15 42 42 H 1.08996 * 109.58433 * 185.57266 * 19 18 17 43 43 H 1.09004 * 109.58627 * 65.14522 * 19 18 17 44 44 H 1.07999 * 126.81109 * 359.97438 * 24 23 21 45 45 H 1.09009 * 109.58300 * 186.60421 * 29 20 19 46 46 H 1.08995 * 109.70955 * 66.24874 * 29 20 19 47 47 H 1.08999 * 109.58294 * 246.15316 * 30 9 7 48 48 H 1.09007 * 109.58412 * 6.43238 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.5097 -2.1147 -0.2873 9 7 3.3297 -1.2308 0.3659 10 6 4.2420 -2.2328 -0.2018 11 6 4.9390 -2.9734 0.9381 12 6 5.6155 -1.9598 1.8639 13 6 4.5585 -1.0304 2.4645 14 1 3.8247 -1.6200 3.0140 15 6 5.2317 -0.0384 3.4152 16 1 5.9671 0.5498 2.8662 17 6 5.9277 -0.8037 4.5431 18 6 6.6290 0.1860 5.4763 19 6 5.5873 1.1216 6.0979 20 7 4.8152 1.7530 5.0190 21 6 4.6968 3.0939 4.9534 22 8 4.1926 3.6127 3.9758 23 6 5.1779 3.9306 6.0652 24 6 5.6319 5.2214 5.9939 25 7 5.9563 5.5748 7.2378 26 7 5.7369 4.5896 8.0334 27 7 5.2707 3.5792 7.3864 28 1 5.0282 2.7206 7.7669 29 6 4.1742 0.8946 4.0135 30 6 3.8585 -0.2641 1.3378 31 1 -0.4850 -0.8366 -0.0749 32 1 3.6758 -2.9427 -0.8046 33 1 4.9887 -1.7372 -0.8223 34 1 5.6895 -3.6498 0.5288 35 1 4.2022 -3.5458 1.5017 36 1 6.3349 -1.3715 1.2943 37 1 6.1319 -2.4883 2.6652 38 1 5.1878 -1.3723 5.1065 39 1 6.6636 -1.4864 4.1184 40 1 7.3515 0.7721 4.9084 41 1 7.1443 -0.3607 6.2660 42 1 6.0904 1.8897 6.6851 43 1 4.9178 0.5483 6.7392 44 1 5.7095 5.8320 5.1065 45 1 3.7448 1.5133 3.2253 46 1 3.3882 0.3029 4.4825 47 1 4.5731 0.3953 0.8454 48 1 3.0394 0.3264 1.7486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053032308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:53 Heat of formation + Delta-G solvation = 82.504684 kcal Electronic energy + Delta-G solvation = -30177.988650 eV Core-core repulsion = 26270.549912 eV Total energy + Delta-G solvation = -3907.438738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.75252 -40.47102 -38.65217 -37.14362 -34.56858 -33.62246 -32.70913 -32.24016 -31.63115 -30.62083 -28.77937 -26.52002 -24.98283 -24.24710 -23.89140 -23.09786 -21.99648 -21.77521 -20.82306 -19.91232 -19.42248 -18.40161 -17.42261 -17.25739 -16.69393 -16.36074 -15.43431 -15.21207 -14.89681 -14.65685 -14.57003 -14.19962 -13.98666 -13.75899 -13.47099 -13.40083 -13.21283 -12.97134 -12.81647 -12.49516 -12.31817 -12.03843 -11.66787 -11.60427 -11.51143 -11.30301 -11.13768 -10.96459 -10.65367 -10.59938 -10.46733 -10.32657 -10.25328 -9.89774 -9.84780 -9.74459 -9.47198 -9.09855 -8.92592 -8.48569 -7.02539 -6.21725 -3.33667 0.59706 1.91626 2.05880 2.44631 2.77971 3.47038 3.58449 3.73070 3.82096 4.17781 4.23186 4.49891 4.58593 4.60899 4.63695 4.76171 4.81060 4.87901 4.90774 5.14592 5.27350 5.33145 5.37260 5.40725 5.48089 5.54774 5.63686 5.64891 5.69743 5.78487 5.86380 5.92043 6.04410 6.07897 6.15028 6.17957 6.21430 6.27024 6.35285 6.37159 6.57368 6.64328 6.70674 6.72649 6.95054 6.97941 7.69096 7.90752 8.03928 8.46621 9.07990 9.61648 10.22546 11.16112 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.003914 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.022558 B = 7152.102427 C = 8640.693207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 1.061 2.939 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.300 1.300 7 C -0.344 4.344 8 H 0.064 0.936 9 N -0.605 5.605 10 C 0.145 3.855 11 C -0.135 4.135 12 C -0.103 4.103 13 C -0.097 4.097 14 H 0.073 0.927 15 C -0.095 4.095 16 H 0.075 0.925 17 C -0.116 4.116 18 C -0.131 4.131 19 C 0.091 3.909 20 N -0.606 5.606 21 C 0.589 3.411 22 O -0.499 6.499 23 C -0.055 4.055 24 C 0.028 3.972 25 N -0.267 5.267 26 N -0.053 5.053 27 N -0.378 5.378 28 H 0.452 0.548 29 C 0.110 3.890 30 C 0.130 3.870 31 H 0.262 0.738 32 H 0.056 0.944 33 H 0.019 0.981 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.204 0.796 45 H 0.106 0.894 46 H 0.077 0.923 47 H 0.025 0.975 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.497 -0.190 15.195 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.892 3.108 4 H -0.214 1.214 5 H -0.212 1.212 6 H -0.228 1.228 7 C -0.473 4.473 8 H 0.082 0.918 9 N -0.328 5.328 10 C 0.019 3.981 11 C -0.174 4.174 12 C -0.140 4.140 13 C -0.117 4.117 14 H 0.091 0.909 15 C -0.114 4.114 16 H 0.093 0.907 17 C -0.154 4.154 18 C -0.170 4.170 19 C -0.032 4.032 20 N -0.340 5.340 21 C 0.373 3.627 22 O -0.371 6.371 23 C -0.190 4.190 24 C -0.131 4.131 25 N -0.133 5.133 26 N -0.035 5.035 27 N -0.107 5.107 28 H 0.301 0.699 29 C -0.011 4.011 30 C 0.004 3.996 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.221 0.779 45 H 0.124 0.876 46 H 0.095 0.905 47 H 0.043 0.957 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.415 2.387 15.979 22.331 hybrid contribution -0.243 -2.763 -0.750 2.873 sum 15.172 -0.376 15.229 21.501 Atomic orbital electron populations 1.70907 1.06060 1.29904 1.49384 1.26207 0.96601 1.01179 0.97536 0.83839 0.74664 0.75671 0.76581 1.21423 1.21194 1.22760 1.20226 0.85275 0.94895 1.46862 0.91831 1.44301 1.07030 1.35693 1.45817 1.20857 0.92453 0.91681 0.93117 1.21934 0.99112 0.97695 0.98707 1.21459 0.97202 0.97169 0.98192 1.21681 0.97291 0.96351 0.96426 0.90861 1.21555 0.97368 0.96520 0.96007 0.90674 1.21652 0.99922 0.97511 0.96272 1.21888 0.97472 0.97745 0.99854 1.22054 0.94405 0.96955 0.89802 1.48070 1.51916 1.04949 1.29023 1.16873 0.79382 0.81461 0.84963 1.90947 1.42946 1.72146 1.31085 1.22416 1.12282 0.98546 0.85743 1.23930 0.99350 0.92404 0.97436 1.74987 1.18279 1.19524 1.00499 1.78208 1.12879 0.91334 1.21094 1.46061 1.43255 1.15378 1.06039 0.69878 1.22011 0.94834 0.92816 0.91390 1.21464 0.96736 0.92094 0.89327 0.92776 0.92547 0.96330 0.92965 0.92345 0.92683 0.92932 0.91540 0.90799 0.91192 0.90451 0.90806 0.90420 0.77875 0.87615 0.90472 0.95729 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.80 13.70 55.49 0.76 -28.04 16 2 C -0.01 -0.40 5.26 -17.43 -0.09 -0.50 16 3 Si 1.06 27.22 24.69 -169.99 -4.20 23.02 16 4 H -0.29 -6.97 6.07 56.52 0.34 -6.63 16 5 H -0.29 -7.05 6.71 56.52 0.38 -6.67 16 6 H -0.30 -7.90 7.11 56.52 0.40 -7.49 16 7 C -0.34 -9.65 9.89 -15.06 -0.15 -9.80 16 8 H 0.06 1.91 8.06 -52.49 -0.42 1.48 16 9 N -0.60 -14.33 2.74 -172.59 -0.47 -14.81 16 10 C 0.15 2.88 6.49 -3.93 -0.03 2.86 16 11 C -0.14 -2.14 6.06 -26.83 -0.16 -2.30 16 12 C -0.10 -1.46 4.86 -26.70 -0.13 -1.59 16 13 C -0.10 -1.52 1.92 -90.51 -0.17 -1.70 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 15 C -0.09 -1.20 1.92 -90.50 -0.17 -1.37 16 16 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 17 C -0.12 -1.06 4.86 -26.68 -0.13 -1.19 16 18 C -0.13 -0.93 6.08 -26.61 -0.16 -1.09 16 19 C 0.09 0.63 5.36 -3.71 -0.02 0.61 16 20 N -0.61 -6.76 2.97 -174.11 -0.52 -7.27 16 21 C 0.59 7.68 7.63 -12.61 -0.10 7.58 16 22 O -0.50 -8.72 16.46 5.26 0.09 -8.63 16 23 C -0.06 -0.59 6.30 -82.33 -0.52 -1.11 16 24 C 0.03 0.30 11.97 -17.35 -0.21 0.09 16 25 N -0.27 -3.18 12.35 30.48 0.38 -2.81 16 26 N -0.05 -0.57 13.35 60.35 0.81 0.24 16 27 N -0.38 -3.13 5.71 33.31 0.19 -2.94 16 28 H 0.45 2.20 7.01 -190.33 -1.33 0.87 16 29 C 0.11 1.52 5.21 -3.71 -0.02 1.50 16 30 C 0.13 2.71 2.96 -3.71 -0.01 2.70 16 31 H 0.26 8.08 8.73 -40.82 -0.36 7.73 16 32 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.62 6.34 -51.93 -0.33 0.29 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.65 6.34 -51.93 -0.33 0.32 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.42 4.67 -51.93 -0.24 0.17 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.20 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.11 1.87 5.28 -51.92 -0.27 1.59 16 46 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.53 7.05 -51.93 -0.37 0.16 16 48 H 0.07 1.68 3.35 -51.93 -0.17 1.51 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -34.50 361.03 -7.79 -42.29 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -8.19 Total: -1.19 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.07 Total: -5.30 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 1.14 Total: -55.63 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 27.22 SS G_CDS: -4.20 Total: 23.02 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.50 -7.79 -42.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053032308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.795 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds