Wall clock time and date at job start Tue Mar 31 2020 18:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48502 * 109.47528 * 89.99982 * 3 2 1 5 5 H 1.48501 * 109.46986 * 209.99908 * 3 2 1 6 6 H 1.48502 * 109.47029 * 329.99565 * 3 2 1 7 7 C 1.38807 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99628 * 17.94877 * 7 2 1 9 9 N 1.36934 * 120.00240 * 197.94510 * 7 2 1 10 10 C 1.46924 * 120.62979 * 209.86824 * 9 7 2 11 11 C 1.52767 * 109.00680 * 233.58638 * 10 9 7 12 12 C 1.53039 * 109.38370 * 305.59117 * 11 10 9 13 13 C 1.53030 * 109.53924 * 61.23992 * 12 11 10 14 14 H 1.08998 * 109.52634 * 58.60106 * 13 12 11 15 15 C 1.53001 * 109.50003 * 178.68365 * 13 12 11 16 16 H 1.09004 * 109.49646 * 59.77198 * 15 13 12 17 17 C 1.53046 * 109.49627 * 299.67857 * 15 13 12 18 18 C 1.53044 * 109.53478 * 178.68149 * 17 15 13 19 19 C 1.53191 * 109.31516 * 61.36540 * 18 17 15 20 20 N 1.46927 * 108.77406 * 305.36164 * 19 18 17 21 21 C 1.34771 * 120.63233 * 233.58423 * 20 19 18 22 22 O 1.21616 * 120.00426 * 171.32895 * 21 20 19 23 23 C 1.47234 * 119.99704 * 351.33081 * 21 20 19 24 24 C 1.37014 * 127.18718 * 151.87971 * 23 21 20 25 25 N 1.33322 * 106.37048 * 179.84571 * 24 23 21 26 26 N 1.28515 * 109.43919 * 0.43486 * 25 24 23 27 27 N 1.28716 * 110.63821 * 359.72234 * 26 25 24 28 28 H 0.96999 * 126.03638 * 179.97438 * 27 26 25 29 29 C 1.46930 * 118.73545 * 53.61057 * 20 19 18 30 30 C 1.46925 * 120.63135 * 30.15566 * 9 7 2 31 31 H 0.96994 * 120.00072 * 174.88244 * 1 2 3 32 32 H 1.08994 * 109.59263 * 353.42043 * 10 9 7 33 33 H 1.08998 * 109.58948 * 113.84916 * 10 9 7 34 34 H 1.09005 * 109.56158 * 185.55612 * 11 10 9 35 35 H 1.09003 * 109.38603 * 65.52137 * 11 10 9 36 36 H 1.09001 * 109.45987 * 301.21735 * 12 11 10 37 37 H 1.09000 * 109.44811 * 181.25444 * 12 11 10 38 38 H 1.09003 * 109.45415 * 298.69847 * 17 15 13 39 39 H 1.08996 * 109.46242 * 58.65874 * 17 15 13 40 40 H 1.08994 * 109.49840 * 301.41257 * 18 17 15 41 41 H 1.08997 * 109.51920 * 181.33042 * 18 17 15 42 42 H 1.08996 * 109.58433 * 185.57266 * 19 18 17 43 43 H 1.09004 * 109.58627 * 65.14522 * 19 18 17 44 44 H 1.07999 * 126.81109 * 359.97438 * 24 23 21 45 45 H 1.09009 * 109.58300 * 186.60421 * 29 20 19 46 46 H 1.08995 * 109.70955 * 66.24874 * 29 20 19 47 47 H 1.08999 * 109.58294 * 246.15316 * 30 9 7 48 48 H 1.09007 * 109.58412 * 6.43238 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.5097 -2.1147 -0.2873 9 7 3.3297 -1.2308 0.3659 10 6 4.2420 -2.2328 -0.2018 11 6 4.9390 -2.9734 0.9381 12 6 5.6155 -1.9598 1.8639 13 6 4.5585 -1.0304 2.4645 14 1 3.8247 -1.6200 3.0140 15 6 5.2317 -0.0384 3.4152 16 1 5.9671 0.5498 2.8662 17 6 5.9277 -0.8037 4.5431 18 6 6.6290 0.1860 5.4763 19 6 5.5873 1.1216 6.0979 20 7 4.8152 1.7530 5.0190 21 6 4.6968 3.0939 4.9534 22 8 4.1926 3.6127 3.9758 23 6 5.1779 3.9306 6.0652 24 6 5.6319 5.2214 5.9939 25 7 5.9563 5.5748 7.2378 26 7 5.7369 4.5896 8.0334 27 7 5.2707 3.5792 7.3864 28 1 5.0282 2.7206 7.7669 29 6 4.1742 0.8946 4.0135 30 6 3.8585 -0.2641 1.3378 31 1 -0.4850 -0.8366 -0.0749 32 1 3.6758 -2.9427 -0.8046 33 1 4.9887 -1.7372 -0.8223 34 1 5.6895 -3.6498 0.5288 35 1 4.2022 -3.5458 1.5017 36 1 6.3349 -1.3715 1.2943 37 1 6.1319 -2.4883 2.6652 38 1 5.1878 -1.3723 5.1065 39 1 6.6636 -1.4864 4.1184 40 1 7.3515 0.7721 4.9084 41 1 7.1443 -0.3607 6.2660 42 1 6.0904 1.8897 6.6851 43 1 4.9178 0.5483 6.7392 44 1 5.7095 5.8320 5.1065 45 1 3.7448 1.5133 3.2253 46 1 3.3882 0.3029 4.4825 47 1 4.5731 0.3953 0.8454 48 1 3.0394 0.3264 1.7486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053032308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:52 Heat of formation + Delta-G solvation = 57.376418 kcal Electronic energy + Delta-G solvation = -30179.078293 eV Core-core repulsion = 26270.549912 eV Total energy + Delta-G solvation = -3908.528382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.57098 -41.45075 -39.93862 -38.32605 -35.81778 -34.85399 -34.11921 -33.11095 -32.65274 -32.34827 -29.98467 -27.55060 -26.63821 -25.30097 -24.86404 -24.11072 -23.42956 -22.72486 -21.90888 -20.95940 -20.90240 -19.41459 -19.23969 -18.20320 -17.56515 -17.38346 -16.81678 -16.36526 -16.21968 -15.63572 -15.54530 -15.43642 -15.30171 -15.12886 -14.98833 -14.49960 -14.36561 -14.18576 -14.00291 -13.66626 -13.58475 -13.40764 -13.29347 -12.59371 -12.53508 -12.39120 -12.15958 -11.97478 -11.91080 -11.74915 -11.73237 -11.62168 -11.53533 -11.41417 -11.34951 -11.04635 -11.01295 -10.71816 -10.59338 -9.84909 -9.10476 -8.47668 -5.58157 -0.25046 1.06438 1.26551 1.38979 1.45793 1.54993 1.63013 1.90068 2.44474 3.02098 3.06993 3.35580 3.40156 3.61104 3.68799 3.79491 3.82462 3.95562 3.99629 4.04794 4.15016 4.24720 4.27476 4.31492 4.40005 4.50440 4.61901 4.64366 4.71097 4.77788 4.82045 4.84670 4.91438 4.97651 4.99256 5.07824 5.10132 5.14464 5.27191 5.30449 5.31301 5.41879 5.48118 5.56636 5.62196 5.76421 6.05371 6.25992 6.72613 6.90466 7.08226 7.56401 8.07531 8.84460 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.003914 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.022558 B = 7152.102427 C = 8640.693207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.063 4.063 3 Si 1.099 2.901 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.311 1.311 7 C -0.324 4.324 8 H 0.034 0.966 9 N -0.623 5.623 10 C 0.136 3.864 11 C -0.126 4.126 12 C -0.097 4.097 13 C -0.087 4.087 14 H 0.064 0.936 15 C -0.085 4.085 16 H 0.068 0.932 17 C -0.110 4.110 18 C -0.126 4.126 19 C 0.083 3.917 20 N -0.598 5.598 21 C 0.589 3.411 22 O -0.555 6.555 23 C -0.057 4.057 24 C 0.026 3.974 25 N -0.290 5.290 26 N -0.053 5.053 27 N -0.351 5.351 28 H 0.468 0.532 29 C 0.111 3.889 30 C 0.126 3.874 31 H 0.250 0.750 32 H 0.041 0.959 33 H 0.027 0.973 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.215 0.785 45 H 0.060 0.940 46 H 0.081 0.919 47 H 0.022 0.978 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.159 -1.456 18.020 26.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.258 4.258 3 Si 0.927 3.073 4 H -0.202 1.202 5 H -0.197 1.197 6 H -0.240 1.240 7 C -0.454 4.454 8 H 0.051 0.949 9 N -0.348 5.348 10 C 0.011 3.989 11 C -0.165 4.165 12 C -0.135 4.135 13 C -0.107 4.107 14 H 0.082 0.918 15 C -0.105 4.105 16 H 0.087 0.913 17 C -0.147 4.147 18 C -0.164 4.164 19 C -0.039 4.039 20 N -0.330 5.330 21 C 0.375 3.625 22 O -0.431 6.431 23 C -0.191 4.191 24 C -0.133 4.133 25 N -0.155 5.155 26 N -0.035 5.035 27 N -0.084 5.084 28 H 0.321 0.679 29 C -0.011 4.011 30 C 0.001 3.999 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.130 0.870 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.232 0.768 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.040 0.960 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 19.151 1.053 18.867 26.904 hybrid contribution -1.374 -2.493 -1.646 3.289 sum 17.777 -1.441 17.221 24.792 Atomic orbital electron populations 1.70993 1.07205 1.29197 1.52959 1.27110 0.96554 1.03953 0.98172 0.83316 0.74054 0.72722 0.77223 1.20171 1.19675 1.23963 1.20131 0.87371 0.93420 1.44483 0.94863 1.44477 1.06069 1.37012 1.47264 1.21073 0.92001 0.90903 0.94923 1.21832 0.99401 0.97996 0.97268 1.21473 0.96478 0.96542 0.98977 1.21509 0.97595 0.96632 0.94995 0.91764 1.21454 0.96600 0.95731 0.96709 0.91325 1.21632 1.00193 0.97708 0.95212 1.21889 0.97000 0.97248 1.00265 1.22460 0.94825 0.97672 0.88915 1.48110 1.51408 1.04233 1.29263 1.17113 0.78615 0.82043 0.84763 1.90922 1.45614 1.73277 1.33316 1.21988 1.13032 0.98211 0.85914 1.24209 0.98794 0.92686 0.97647 1.75003 1.19414 1.20227 1.00853 1.78157 1.12792 0.91593 1.20993 1.46002 1.41819 1.15640 1.04968 0.67908 1.21804 0.95652 0.92577 0.91114 1.21480 0.96087 0.91932 0.90385 0.94061 0.93987 0.95474 0.89601 0.93298 0.92143 0.88943 0.90548 0.89442 0.91918 0.87015 0.89246 0.87426 0.76847 0.92169 0.90122 0.96048 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.79 13.70 21.65 0.30 -62.49 16 2 C -0.06 -3.81 5.26 84.86 0.45 -3.36 16 3 Si 1.10 57.51 24.69 68.60 1.69 59.20 16 4 H -0.27 -13.77 6.07 99.48 0.60 -13.17 16 5 H -0.27 -13.33 6.71 99.48 0.67 -12.67 16 6 H -0.31 -16.69 7.11 99.48 0.71 -15.98 16 7 C -0.32 -18.86 9.89 84.03 0.83 -18.03 16 8 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 9 N -0.62 -29.82 2.74 -699.94 -1.92 -31.74 16 10 C 0.14 5.28 6.49 86.22 0.56 5.84 16 11 C -0.13 -3.61 6.06 30.53 0.19 -3.43 16 12 C -0.10 -2.38 4.86 30.62 0.15 -2.23 16 13 C -0.09 -2.57 1.92 -10.72 -0.02 -2.59 16 14 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 15 C -0.09 -1.95 1.92 -10.71 -0.02 -1.97 16 16 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 17 C -0.11 -1.47 4.86 30.62 0.15 -1.32 16 18 C -0.13 -1.13 6.08 30.67 0.19 -0.95 16 19 C 0.08 0.80 5.36 86.36 0.46 1.26 16 20 N -0.60 -12.24 2.97 -823.01 -2.45 -14.68 16 21 C 0.59 14.97 7.63 86.61 0.66 15.63 16 22 O -0.56 -19.97 16.46 -4.08 -0.07 -20.04 16 23 C -0.06 -1.11 6.30 40.41 0.25 -0.86 16 24 C 0.03 0.54 11.97 84.18 1.01 1.55 16 25 N -0.29 -6.47 12.35 -57.50 -0.71 -7.18 16 26 N -0.05 -1.01 13.35 37.02 0.49 -0.52 16 27 N -0.35 -4.86 5.71 -48.52 -0.28 -5.14 16 28 H 0.47 2.83 7.01 -219.90 -1.54 1.29 16 29 C 0.11 2.97 5.21 86.36 0.45 3.42 16 30 C 0.13 5.26 2.96 86.36 0.26 5.51 16 31 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 32 H 0.04 1.71 7.93 -2.39 -0.02 1.69 16 33 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.62 6.34 -2.39 -0.02 1.60 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.09 1.00 6.34 -2.39 -0.02 0.98 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.09 0.61 4.67 -2.39 -0.01 0.60 16 43 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 44 H 0.21 3.73 8.06 -2.91 -0.02 3.71 16 45 H 0.06 2.20 5.28 -2.38 -0.01 2.19 16 46 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.02 0.91 7.05 -2.39 -0.02 0.89 16 48 H 0.05 2.17 3.35 -2.38 -0.01 2.16 16 Total: -1.00 -81.09 361.03 1.89 -79.20 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -0.73 Total: 4.92 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 5.56 Total: -1.52 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -4.56 Total: -121.75 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.07 Total: -20.04 kcal Atomic # 14 Polarization: 57.51 SS G_CDS: 1.69 Total: 59.20 kcal Total: -81.09 1.89 -79.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053032308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.576 kcal (2) G-P(sol) polarization free energy of solvation -81.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds