Wall clock time and date at job start Tue Mar 31 2020 18:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86790 * 120.00269 * 2 1 4 4 H 1.48500 * 109.47488 * 269.99875 * 3 2 1 5 5 H 1.48505 * 109.47017 * 29.99364 * 3 2 1 6 6 H 1.48500 * 109.47516 * 149.99440 * 3 2 1 7 7 C 1.38814 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99706 * 195.17557 * 7 2 1 9 9 N 1.36933 * 120.00680 * 15.17942 * 7 2 1 10 10 C 1.46930 * 120.62627 * 26.06179 * 9 7 2 11 11 C 1.53189 * 108.77413 * 126.43856 * 10 9 7 12 12 C 1.53039 * 109.31409 * 54.63415 * 11 10 9 13 13 C 1.53042 * 109.53638 * 298.63285 * 12 11 10 14 14 H 1.08995 * 109.50427 * 301.38099 * 13 12 11 15 15 C 1.53003 * 109.49764 * 181.31419 * 13 12 11 16 16 H 1.09000 * 109.52552 * 299.99027 * 15 13 12 17 17 C 1.53040 * 109.49453 * 60.06688 * 15 13 12 18 18 C 1.53044 * 109.53618 * 181.31586 * 17 15 13 19 19 C 1.53188 * 109.31299 * 298.63314 * 18 17 15 20 20 N 1.46930 * 108.89154 * 54.56496 * 19 18 17 21 21 C 1.34778 * 120.62653 * 126.46082 * 20 19 18 22 22 O 1.21618 * 120.00283 * 352.54154 * 21 20 19 23 23 C 1.47236 * 119.99736 * 172.54534 * 21 20 19 24 24 C 1.37008 * 127.19053 * 153.72486 * 23 21 20 25 25 N 1.33320 * 106.37003 * 179.97438 * 24 23 21 26 26 N 1.28510 * 109.44091 * 0.02562 * 25 24 23 27 27 N 1.28715 * 110.63721 * 359.71452 * 26 25 24 28 28 H 0.97004 * 126.03334 * 180.30069 * 27 26 25 29 29 C 1.46961 * 118.71493 * 306.64205 * 20 19 18 30 30 C 1.46933 * 120.60827 * 206.08892 * 9 7 2 31 31 H 0.96997 * 120.00112 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.58855 * 6.65092 * 10 9 7 33 33 H 1.09006 * 109.58615 * 246.22259 * 10 9 7 34 34 H 1.09004 * 109.49636 * 294.68283 * 11 10 9 35 35 H 1.08998 * 109.52249 * 174.60387 * 11 10 9 36 36 H 1.09004 * 109.46212 * 178.61492 * 12 11 10 37 37 H 1.09000 * 109.46095 * 58.65701 * 12 11 10 38 38 H 1.09002 * 109.45829 * 61.29673 * 17 15 13 39 39 H 1.08998 * 109.45291 * 301.33136 * 17 15 13 40 40 H 1.09004 * 109.49530 * 178.68782 * 18 17 15 41 41 H 1.08992 * 109.52389 * 58.60506 * 18 17 15 42 42 H 1.09000 * 109.59077 * 174.42422 * 19 18 17 43 43 H 1.09000 * 109.58853 * 294.70849 * 19 18 17 44 44 H 1.08001 * 126.81275 * 359.97438 * 24 23 21 45 45 H 1.08999 * 109.46598 * 293.56836 * 29 20 19 46 46 H 1.09006 * 109.70706 * 173.28762 * 29 20 19 47 47 H 1.09001 * 109.56336 * 113.75865 * 30 9 7 48 48 H 1.09001 * 109.61447 * 353.33494 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6526 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0620 -1.2184 0.2454 9 7 1.3614 -2.3676 -0.3094 10 6 0.1663 -2.3545 -1.1640 11 6 0.3797 -3.3306 -2.3252 12 6 0.7385 -4.7098 -1.7675 13 6 2.0411 -4.6162 -0.9696 14 1 2.8374 -4.2456 -1.6151 15 6 2.4164 -6.0018 -0.4401 16 1 1.6210 -6.3723 0.2066 17 6 2.6084 -6.9629 -1.6154 18 6 2.9516 -8.3571 -1.0855 19 6 4.2628 -8.2905 -0.2963 20 7 4.1388 -7.2626 0.7462 21 6 4.3994 -7.5572 2.0354 22 8 4.6078 -8.7089 2.3659 23 6 4.4315 -6.4846 3.0436 24 6 4.1835 -6.6021 4.3859 25 7 4.3267 -5.3815 4.9027 26 7 4.6391 -4.5556 3.9690 27 7 4.7212 -5.1614 2.8363 28 1 4.9465 -4.7530 1.9857 29 6 3.7215 -5.9085 0.3565 30 6 1.8473 -3.6545 0.2070 31 1 -0.4850 0.8400 -0.0004 32 1 0.0081 -1.3497 -1.5557 33 1 -0.7024 -2.6630 -0.5822 34 1 1.1915 -2.9715 -2.9578 35 1 -0.5352 -3.4027 -2.9132 36 1 0.8668 -5.4124 -2.5910 37 1 -0.0626 -5.0576 -1.1154 38 1 3.4204 -6.6049 -2.2483 39 1 1.6885 -7.0122 -2.1981 40 1 3.0653 -9.0465 -1.9223 41 1 2.1514 -8.7059 -0.4329 42 1 4.4607 -9.2577 0.1659 43 1 5.0812 -8.0325 -0.9684 44 1 3.9235 -7.5044 4.9194 45 1 4.4953 -5.4537 -0.2618 46 1 3.5628 -5.3018 1.2482 47 1 1.1161 -4.0688 0.9010 48 1 2.7981 -3.5077 0.7194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053032316.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:03 Heat of formation + Delta-G solvation = 82.550283 kcal Electronic energy + Delta-G solvation = -30269.252053 eV Core-core repulsion = 26361.815291 eV Total energy + Delta-G solvation = -3907.436761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.56405 -40.48732 -38.67006 -36.91786 -34.32784 -33.82084 -32.69507 -31.97784 -31.26720 -30.49530 -28.40490 -26.51849 -25.30363 -24.12377 -23.84725 -22.95381 -22.10937 -21.51644 -20.65502 -20.13449 -19.22503 -18.29415 -17.29899 -16.72300 -16.58805 -16.36335 -15.30967 -14.97794 -14.80174 -14.79044 -14.42194 -14.17885 -13.99499 -13.71326 -13.40513 -13.26487 -13.17187 -12.80243 -12.52799 -12.35120 -12.24233 -11.89155 -11.55264 -11.39456 -11.19480 -11.11515 -11.03349 -10.93217 -10.78920 -10.53610 -10.52331 -10.32376 -10.24576 -10.21992 -9.94046 -9.70147 -9.62807 -9.43619 -8.98111 -8.51714 -6.75629 -5.82792 -3.26772 0.74165 2.10867 2.23785 2.45156 2.82062 3.34187 3.41096 3.42428 3.89874 4.32051 4.37851 4.43264 4.59548 4.66974 4.71645 4.77682 4.96472 4.99883 5.06010 5.17896 5.29667 5.32016 5.42377 5.46513 5.52807 5.55830 5.60471 5.73200 5.78326 5.79721 5.92259 5.99046 6.03642 6.08418 6.23211 6.28825 6.31640 6.40427 6.49275 6.61970 6.68141 6.79989 6.86228 6.88433 7.36631 7.61673 7.64715 7.73738 8.13369 8.38796 9.15440 9.78507 10.33369 11.24473 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.004234 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.599524 B = 6611.223348 C = 8601.348707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.166 3.834 11 C -0.143 4.143 12 C -0.102 4.102 13 C -0.098 4.098 14 H 0.070 0.930 15 C -0.090 4.090 16 H 0.075 0.925 17 C -0.117 4.117 18 C -0.135 4.135 19 C 0.113 3.887 20 N -0.605 5.605 21 C 0.599 3.401 22 O -0.520 6.520 23 C -0.069 4.069 24 C 0.030 3.970 25 N -0.270 5.270 26 N -0.037 5.037 27 N -0.372 5.372 28 H 0.454 0.546 29 C 0.092 3.908 30 C 0.153 3.847 31 H 0.254 0.746 32 H 0.094 0.906 33 H 0.015 0.985 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.202 0.798 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.015 0.985 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.137 -16.494 -3.295 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.040 3.960 11 C -0.182 4.182 12 C -0.139 4.139 13 C -0.119 4.119 14 H 0.089 0.911 15 C -0.110 4.110 16 H 0.094 0.906 17 C -0.154 4.154 18 C -0.173 4.173 19 C -0.009 4.009 20 N -0.338 5.338 21 C 0.384 3.616 22 O -0.394 6.394 23 C -0.203 4.203 24 C -0.130 4.130 25 N -0.135 5.135 26 N -0.019 5.019 27 N -0.103 5.103 28 H 0.304 0.696 29 C -0.031 4.031 30 C 0.026 3.974 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.219 0.781 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.033 0.967 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.261 -15.675 -2.247 17.420 hybrid contribution 0.316 0.275 -1.155 1.229 sum 7.576 -15.399 -3.402 17.496 Atomic orbital electron populations 1.70001 1.05237 1.25495 1.54051 1.25007 0.95337 0.98352 1.00921 0.86274 0.79109 0.83659 0.77642 1.21469 1.21677 1.20409 1.19178 0.92003 0.84530 1.42522 0.91676 1.44032 1.31301 1.01074 1.54853 1.20895 0.87598 0.98872 0.88585 1.22191 0.99773 0.96156 1.00098 1.21455 0.96562 0.97555 0.98354 1.21721 0.98184 0.92718 0.99297 0.91135 1.21499 0.95763 0.96999 0.96722 0.90612 1.21655 1.02462 0.93773 0.97532 1.21935 0.97332 0.98071 0.99941 1.21700 0.97984 0.92196 0.88975 1.48081 1.66822 1.12534 1.06351 1.16822 0.77198 0.86610 0.80923 1.90840 1.49914 1.19231 1.79438 1.22238 1.14542 0.85697 0.97798 1.23875 1.01170 0.98029 0.89925 1.75022 1.15783 0.99725 1.22951 1.78320 1.15170 1.20885 0.87504 1.46202 1.45762 1.06290 1.12024 0.69573 1.22300 0.98097 0.82200 1.00474 1.20906 0.96851 0.87266 0.92330 0.93571 0.88761 0.96713 0.92842 0.93383 0.93370 0.92901 0.91636 0.90731 0.90504 0.91324 0.88702 0.90993 0.78110 0.90214 0.89953 0.96723 0.93792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.64 10.92 55.49 0.61 -25.03 16 2 C 0.00 0.06 4.99 -17.43 -0.09 -0.03 16 3 Si 0.90 21.25 29.58 -169.99 -5.03 16.22 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.62 9.62 -15.06 -0.14 -6.77 16 8 H 0.07 1.66 7.86 -52.48 -0.41 1.24 16 9 N -0.59 -13.91 3.01 -172.31 -0.52 -14.42 16 10 C 0.17 3.81 5.32 -3.71 -0.02 3.79 16 11 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 12 C -0.10 -1.52 4.86 -26.69 -0.13 -1.64 16 13 C -0.10 -1.41 1.92 -90.50 -0.17 -1.58 16 14 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 15 C -0.09 -0.99 1.93 -90.50 -0.17 -1.17 16 16 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 17 C -0.12 -1.05 4.86 -26.69 -0.13 -1.18 16 18 C -0.13 -1.06 6.08 -26.61 -0.16 -1.22 16 19 C 0.11 0.95 6.44 -3.71 -0.02 0.93 16 20 N -0.60 -6.03 2.98 -174.08 -0.52 -6.55 16 21 C 0.60 7.11 7.64 -12.60 -0.10 7.01 16 22 O -0.52 -7.35 16.44 5.26 0.09 -7.27 16 23 C -0.07 -0.81 6.36 -82.33 -0.52 -1.34 16 24 C 0.03 0.36 11.96 -17.35 -0.21 0.15 16 25 N -0.27 -3.92 12.35 30.47 0.38 -3.54 16 26 N -0.04 -0.53 13.35 60.35 0.81 0.27 16 27 N -0.37 -4.33 5.72 33.31 0.19 -4.14 16 28 H 0.45 4.22 6.83 -190.33 -1.30 2.92 16 29 C 0.09 0.92 4.15 -3.69 -0.02 0.90 16 30 C 0.15 2.86 5.29 -3.71 -0.02 2.84 16 31 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.09 2.46 5.82 -51.93 -0.30 2.16 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.61 6.34 -51.93 -0.33 0.28 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.69 6.33 -51.93 -0.33 0.36 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.86 7.00 -51.93 -0.36 0.50 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.20 1.90 8.06 -52.49 -0.42 1.47 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.90 3.25 -51.93 -0.17 0.73 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.04 0.78 6.68 -51.93 -0.35 0.43 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -31.41 367.34 -8.72 -40.12 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -8.18 Total: 0.82 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.07 Total: -2.02 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.94 Total: -53.42 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.09 Total: -7.27 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.41 -8.72 -40.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053032316.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.675 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds