Wall clock time and date at job start Tue Mar 31 2020 18:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86790 * 120.00269 * 2 1 4 4 H 1.48500 * 109.47488 * 269.99875 * 3 2 1 5 5 H 1.48505 * 109.47017 * 29.99364 * 3 2 1 6 6 H 1.48500 * 109.47516 * 149.99440 * 3 2 1 7 7 C 1.38814 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99706 * 195.17557 * 7 2 1 9 9 N 1.36933 * 120.00680 * 15.17942 * 7 2 1 10 10 C 1.46930 * 120.62627 * 26.06179 * 9 7 2 11 11 C 1.53189 * 108.77413 * 126.43856 * 10 9 7 12 12 C 1.53039 * 109.31409 * 54.63415 * 11 10 9 13 13 C 1.53042 * 109.53638 * 298.63285 * 12 11 10 14 14 H 1.08995 * 109.50427 * 301.38099 * 13 12 11 15 15 C 1.53003 * 109.49764 * 181.31419 * 13 12 11 16 16 H 1.09000 * 109.52552 * 299.99027 * 15 13 12 17 17 C 1.53040 * 109.49453 * 60.06688 * 15 13 12 18 18 C 1.53044 * 109.53618 * 181.31586 * 17 15 13 19 19 C 1.53188 * 109.31299 * 298.63314 * 18 17 15 20 20 N 1.46930 * 108.89154 * 54.56496 * 19 18 17 21 21 C 1.34778 * 120.62653 * 126.46082 * 20 19 18 22 22 O 1.21618 * 120.00283 * 352.54154 * 21 20 19 23 23 C 1.47236 * 119.99736 * 172.54534 * 21 20 19 24 24 C 1.37008 * 127.19053 * 153.72486 * 23 21 20 25 25 N 1.33320 * 106.37003 * 179.97438 * 24 23 21 26 26 N 1.28510 * 109.44091 * 0.02562 * 25 24 23 27 27 N 1.28715 * 110.63721 * 359.71452 * 26 25 24 28 28 H 0.97004 * 126.03334 * 180.30069 * 27 26 25 29 29 C 1.46961 * 118.71493 * 306.64205 * 20 19 18 30 30 C 1.46933 * 120.60827 * 206.08892 * 9 7 2 31 31 H 0.96997 * 120.00112 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.58855 * 6.65092 * 10 9 7 33 33 H 1.09006 * 109.58615 * 246.22259 * 10 9 7 34 34 H 1.09004 * 109.49636 * 294.68283 * 11 10 9 35 35 H 1.08998 * 109.52249 * 174.60387 * 11 10 9 36 36 H 1.09004 * 109.46212 * 178.61492 * 12 11 10 37 37 H 1.09000 * 109.46095 * 58.65701 * 12 11 10 38 38 H 1.09002 * 109.45829 * 61.29673 * 17 15 13 39 39 H 1.08998 * 109.45291 * 301.33136 * 17 15 13 40 40 H 1.09004 * 109.49530 * 178.68782 * 18 17 15 41 41 H 1.08992 * 109.52389 * 58.60506 * 18 17 15 42 42 H 1.09000 * 109.59077 * 174.42422 * 19 18 17 43 43 H 1.09000 * 109.58853 * 294.70849 * 19 18 17 44 44 H 1.08001 * 126.81275 * 359.97438 * 24 23 21 45 45 H 1.08999 * 109.46598 * 293.56836 * 29 20 19 46 46 H 1.09006 * 109.70706 * 173.28762 * 29 20 19 47 47 H 1.09001 * 109.56336 * 113.75865 * 30 9 7 48 48 H 1.09001 * 109.61447 * 353.33494 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6526 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0620 -1.2184 0.2454 9 7 1.3614 -2.3676 -0.3094 10 6 0.1663 -2.3545 -1.1640 11 6 0.3797 -3.3306 -2.3252 12 6 0.7385 -4.7098 -1.7675 13 6 2.0411 -4.6162 -0.9696 14 1 2.8374 -4.2456 -1.6151 15 6 2.4164 -6.0018 -0.4401 16 1 1.6210 -6.3723 0.2066 17 6 2.6084 -6.9629 -1.6154 18 6 2.9516 -8.3571 -1.0855 19 6 4.2628 -8.2905 -0.2963 20 7 4.1388 -7.2626 0.7462 21 6 4.3994 -7.5572 2.0354 22 8 4.6078 -8.7089 2.3659 23 6 4.4315 -6.4846 3.0436 24 6 4.1835 -6.6021 4.3859 25 7 4.3267 -5.3815 4.9027 26 7 4.6391 -4.5556 3.9690 27 7 4.7212 -5.1614 2.8363 28 1 4.9465 -4.7530 1.9857 29 6 3.7215 -5.9085 0.3565 30 6 1.8473 -3.6545 0.2070 31 1 -0.4850 0.8400 -0.0004 32 1 0.0081 -1.3497 -1.5557 33 1 -0.7024 -2.6630 -0.5822 34 1 1.1915 -2.9715 -2.9578 35 1 -0.5352 -3.4027 -2.9132 36 1 0.8668 -5.4124 -2.5910 37 1 -0.0626 -5.0576 -1.1154 38 1 3.4204 -6.6049 -2.2483 39 1 1.6885 -7.0122 -2.1981 40 1 3.0653 -9.0465 -1.9223 41 1 2.1514 -8.7059 -0.4329 42 1 4.4607 -9.2577 0.1659 43 1 5.0812 -8.0325 -0.9684 44 1 3.9235 -7.5044 4.9194 45 1 4.4953 -5.4537 -0.2618 46 1 3.5628 -5.3018 1.2482 47 1 1.1161 -4.0688 0.9010 48 1 2.7981 -3.5077 0.7194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053032316.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:02 Heat of formation + Delta-G solvation = 62.478484 kcal Electronic energy + Delta-G solvation = -30270.122431 eV Core-core repulsion = 26361.815291 eV Total energy + Delta-G solvation = -3908.307140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.55516 -41.38675 -39.85093 -38.15215 -35.57806 -34.99008 -33.76803 -33.22304 -32.39011 -32.07204 -29.64833 -27.60879 -26.89372 -25.15178 -24.86700 -24.06183 -23.55563 -22.58249 -21.81242 -21.01742 -20.62243 -19.20676 -18.69412 -18.13339 -17.51372 -17.31237 -16.85408 -16.19027 -15.93161 -15.79439 -15.47022 -15.36012 -15.17049 -14.88678 -14.83728 -14.42209 -14.16978 -14.00008 -13.86140 -13.62494 -13.33609 -13.20006 -12.89977 -12.75294 -12.47948 -12.40919 -12.28986 -12.06103 -11.99848 -11.82578 -11.75316 -11.72916 -11.57210 -11.40603 -11.35040 -11.04945 -10.87850 -10.69599 -10.51742 -9.80938 -8.68649 -7.85278 -5.31303 -0.22011 1.11338 1.32662 1.46743 1.47545 1.55848 1.56197 1.93329 2.50719 2.99988 3.28837 3.40444 3.52181 3.60130 3.75009 3.84422 3.95084 4.06011 4.06858 4.13578 4.22133 4.24565 4.33543 4.42597 4.47384 4.62747 4.73288 4.77112 4.78453 4.86494 4.87589 4.94932 4.95969 5.04545 5.07703 5.10135 5.25245 5.34533 5.37620 5.40534 5.43109 5.53178 5.55560 5.59622 5.69462 5.82829 6.01204 6.39456 6.72364 7.12071 7.15446 7.87669 8.37417 9.19667 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.004234 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.599524 B = 6611.223348 C = 8601.348707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.963 3.037 4 H -0.284 1.284 5 H -0.300 1.300 6 H -0.267 1.267 7 C -0.255 4.255 8 H 0.072 0.928 9 N -0.609 5.609 10 C 0.170 3.830 11 C -0.132 4.132 12 C -0.097 4.097 13 C -0.083 4.083 14 H 0.077 0.923 15 C -0.081 4.081 16 H 0.061 0.939 17 C -0.112 4.112 18 C -0.127 4.127 19 C 0.108 3.892 20 N -0.595 5.595 21 C 0.601 3.399 22 O -0.544 6.544 23 C -0.065 4.065 24 C 0.025 3.975 25 N -0.294 5.294 26 N -0.066 5.066 27 N -0.357 5.357 28 H 0.463 0.537 29 C 0.092 3.908 30 C 0.150 3.850 31 H 0.247 0.753 32 H 0.057 0.943 33 H -0.015 1.015 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.224 0.776 45 H 0.105 0.895 46 H 0.069 0.931 47 H -0.004 1.004 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.873 -18.452 -5.265 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.249 4.249 3 Si 0.792 3.208 4 H -0.211 1.211 5 H -0.227 1.227 6 H -0.192 1.192 7 C -0.385 4.385 8 H 0.090 0.910 9 N -0.331 5.331 10 C 0.044 3.956 11 C -0.171 4.171 12 C -0.135 4.135 13 C -0.103 4.103 14 H 0.095 0.905 15 C -0.101 4.101 16 H 0.080 0.920 17 C -0.149 4.149 18 C -0.165 4.165 19 C -0.012 4.012 20 N -0.327 5.327 21 C 0.387 3.613 22 O -0.421 6.421 23 C -0.200 4.200 24 C -0.135 4.135 25 N -0.159 5.159 26 N -0.048 5.048 27 N -0.089 5.089 28 H 0.315 0.685 29 C -0.031 4.031 30 C 0.025 3.975 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.003 0.997 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.240 0.760 45 H 0.123 0.877 46 H 0.087 0.913 47 H 0.014 0.986 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.020 -17.644 -4.245 20.266 hybrid contribution -0.258 0.831 -0.539 1.023 sum 8.762 -16.814 -4.783 19.554 Atomic orbital electron populations 1.70177 1.06688 1.25553 1.56104 1.25740 0.96005 1.01395 1.01765 0.85314 0.78123 0.79804 0.77540 1.21084 1.22705 1.19212 1.19566 0.92471 0.85644 1.40858 0.91006 1.44308 1.31219 1.02147 1.55475 1.20703 0.86723 0.98320 0.89867 1.22017 1.00651 0.96487 0.97948 1.21446 0.96423 0.96212 0.99395 1.21495 0.98250 0.93379 0.97192 0.90469 1.21357 0.95770 0.95331 0.97627 0.92024 1.21635 1.03283 0.93566 0.96448 1.21890 0.96415 0.97836 1.00374 1.21921 0.99201 0.91408 0.88690 1.48103 1.65647 1.12932 1.06036 1.16761 0.77171 0.86023 0.81382 1.90834 1.51387 1.19998 1.79849 1.22350 1.13996 0.85726 0.97902 1.24321 1.00727 0.98097 0.90366 1.74984 1.16641 1.00663 1.23598 1.78269 1.16617 1.21554 0.88326 1.46175 1.44717 1.06175 1.11872 0.68471 1.22313 0.98408 0.82148 1.00198 1.21093 0.96315 0.86113 0.93998 0.94332 0.92429 0.99708 0.92769 0.91871 0.89604 0.93719 0.90082 0.90404 0.88043 0.92564 0.89350 0.88645 0.75967 0.87744 0.91259 0.98618 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.34 10.92 21.65 0.24 -55.11 16 2 C -0.05 -2.98 4.99 84.86 0.42 -2.56 16 3 Si 0.96 44.32 29.58 68.60 2.03 46.35 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.26 -13.46 9.62 84.03 0.81 -12.65 16 8 H 0.07 3.61 7.86 -2.91 -0.02 3.59 16 9 N -0.61 -28.95 3.01 -699.06 -2.10 -31.06 16 10 C 0.17 7.98 5.32 86.36 0.46 8.44 16 11 C -0.13 -4.55 6.08 30.67 0.19 -4.37 16 12 C -0.10 -2.65 4.86 30.62 0.15 -2.50 16 13 C -0.08 -2.16 1.92 -10.71 -0.02 -2.18 16 14 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 15 C -0.08 -1.54 1.93 -10.72 -0.02 -1.56 16 16 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 17 C -0.11 -1.49 4.86 30.62 0.15 -1.35 16 18 C -0.13 -1.47 6.08 30.67 0.19 -1.29 16 19 C 0.11 1.42 6.44 86.36 0.56 1.98 16 20 N -0.60 -10.20 2.98 -822.91 -2.45 -12.65 16 21 C 0.60 13.20 7.64 86.61 0.66 13.86 16 22 O -0.54 -14.57 16.44 -4.09 -0.07 -14.64 16 23 C -0.06 -1.47 6.36 40.41 0.26 -1.21 16 24 C 0.02 0.59 11.96 84.18 1.01 1.60 16 25 N -0.29 -8.57 12.35 -57.50 -0.71 -9.28 16 26 N -0.07 -1.90 13.35 37.02 0.49 -1.41 16 27 N -0.36 -8.02 5.72 -48.52 -0.28 -8.30 16 28 H 0.46 7.97 6.83 -219.89 -1.50 6.47 16 29 C 0.09 1.56 4.15 86.35 0.36 1.92 16 30 C 0.15 5.53 5.29 86.36 0.46 5.99 16 31 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.06 3.13 5.82 -2.39 -0.01 3.12 16 33 H -0.02 -0.78 8.14 -2.38 -0.02 -0.80 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 1.77 6.34 -2.38 -0.02 1.75 16 37 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.04 6.33 -2.39 -0.02 1.03 16 40 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 1.35 7.00 -2.39 -0.02 1.33 16 43 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.22 4.01 8.06 -2.91 -0.02 3.98 16 45 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.07 1.38 3.25 -2.38 -0.01 1.37 16 47 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 48 H 0.05 1.79 6.68 -2.39 -0.02 1.78 16 Total: -1.00 -70.76 367.34 2.25 -68.51 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -0.52 Total: 13.46 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 5.62 Total: 4.12 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -4.81 Total: -117.80 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.07 Total: -14.64 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -70.76 2.25 -68.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053032316.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.987 kcal (2) G-P(sol) polarization free energy of solvation -70.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds