Wall clock time and date at job start Tue Mar 31 2020 18:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46692 * 299.99940 * 3 2 1 6 6 H 1.48497 * 109.47525 * 60.00018 * 3 2 1 7 7 C 1.38814 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99901 * 204.13944 * 7 2 1 9 9 N 1.36942 * 120.00037 * 24.14756 * 7 2 1 10 10 C 1.46928 * 120.62818 * 26.09997 * 9 7 2 11 11 C 1.53195 * 108.77356 * 126.41588 * 10 9 7 12 12 C 1.53042 * 109.31129 * 54.63313 * 11 10 9 13 13 C 1.53040 * 109.53787 * 298.63472 * 12 11 10 14 14 H 1.08998 * 109.49763 * 301.37790 * 13 12 11 15 15 C 1.53006 * 109.49735 * 181.31714 * 13 12 11 16 16 H 1.08994 * 109.58454 * 187.25798 * 15 13 12 17 17 C 1.53196 * 109.58380 * 307.53992 * 15 13 12 18 18 C 1.53040 * 109.30870 * 174.56072 * 17 15 13 19 19 C 1.53030 * 109.54214 * 298.63479 * 18 17 15 20 20 C 1.53198 * 109.31268 * 61.36985 * 19 18 17 21 21 N 1.46927 * 108.88906 * 305.28882 * 20 19 18 22 22 C 1.34773 * 120.63611 * 233.68508 * 21 20 19 23 23 O 1.21613 * 120.00468 * 187.48789 * 22 21 20 24 24 C 1.47238 * 119.99653 * 7.47994 * 22 21 20 25 25 C 1.37002 * 127.19144 * 205.23653 * 24 22 21 26 26 N 1.33316 * 106.37490 * 179.97438 * 25 24 22 27 27 N 1.28514 * 109.43990 * 359.97438 * 26 25 24 28 28 N 1.28716 * 110.63547 * 359.75615 * 27 26 25 29 29 H 0.97005 * 126.03832 * 180.26166 * 28 27 26 30 30 C 1.46927 * 120.63116 * 206.12788 * 9 7 2 31 31 H 0.97006 * 119.99682 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.58918 * 6.63127 * 10 9 7 33 33 H 1.08998 * 109.70224 * 246.27031 * 10 9 7 34 34 H 1.09002 * 109.50049 * 294.68255 * 11 10 9 35 35 H 1.08997 * 109.52439 * 174.60297 * 11 10 9 36 36 H 1.09003 * 109.45863 * 178.60963 * 12 11 10 37 37 H 1.08997 * 109.44999 * 58.64773 * 12 11 10 38 38 H 1.09000 * 109.49945 * 54.61832 * 17 15 13 39 39 H 1.08999 * 109.52538 * 294.53366 * 17 15 13 40 40 H 1.09004 * 109.45663 * 178.61078 * 18 17 15 41 41 H 1.09003 * 109.45591 * 58.66231 * 18 17 15 42 42 H 1.08991 * 109.50186 * 301.41394 * 19 18 17 43 43 H 1.09002 * 109.52688 * 181.33020 * 19 18 17 44 44 H 1.09000 * 109.58990 * 65.14921 * 20 19 18 45 45 H 1.08996 * 109.58565 * 185.43947 * 20 19 18 46 46 H 1.08007 * 126.81173 * 0.02562 * 25 24 22 47 47 H 1.08990 * 109.58666 * 113.79455 * 30 9 7 48 48 H 1.08999 * 109.58456 * 353.36618 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0193 -1.2430 0.3830 9 7 1.4153 -2.3365 -0.4841 10 6 0.3470 -2.2505 -1.4891 11 6 0.7211 -3.1343 -2.6832 12 6 1.0085 -4.5546 -2.1912 13 6 2.1903 -4.5303 -1.2192 14 1 3.0647 -4.1147 -1.7200 15 6 2.4978 -5.9549 -0.7533 16 1 3.2512 -5.9273 0.0338 17 6 1.2192 -6.6072 -0.2178 18 6 1.5020 -8.0729 0.1197 19 6 1.9294 -8.8167 -1.1476 20 6 3.2160 -8.1895 -1.6936 21 7 2.9983 -6.7494 -1.8870 22 6 3.2492 -6.1707 -3.0781 23 8 3.1966 -4.9609 -3.1896 24 6 3.5871 -7.0035 -4.2444 25 6 4.3099 -6.6303 -5.3469 26 7 4.3652 -7.7006 -6.1399 27 7 3.7318 -8.6740 -5.5895 28 7 3.2500 -8.3156 -4.4509 29 1 2.7369 -8.8748 -3.8468 30 6 1.8329 -3.6624 -0.0085 31 1 -0.4850 0.8401 0.0004 32 1 0.2381 -1.2174 -1.8191 33 1 -0.5920 -2.5973 -1.0578 34 1 1.6092 -2.7313 -3.1701 35 1 -0.1052 -3.1555 -3.3937 36 1 1.2509 -5.1915 -3.0419 37 1 0.1282 -4.9476 -1.6827 38 1 0.4380 -6.5527 -0.9759 39 1 0.8918 -6.0836 0.6804 40 1 0.6003 -8.5328 0.5241 41 1 2.3004 -8.1276 0.8597 42 1 1.1415 -8.7414 -1.8969 43 1 2.1079 -9.8658 -0.9116 44 1 4.0281 -8.3441 -0.9831 45 1 3.4717 -8.6516 -2.6471 46 1 4.7486 -5.6616 -5.5356 47 1 1.0163 -4.1259 0.5450 48 1 2.7043 -3.5609 0.6383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053090536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:33 Heat of formation + Delta-G solvation = 125.380189 kcal Electronic energy + Delta-G solvation = -30867.917975 eV Core-core repulsion = 26962.338458 eV Total energy + Delta-G solvation = -3905.579517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.70185 -40.95274 -37.73486 -37.18832 -34.40697 -33.41256 -32.96808 -31.79454 -31.23565 -30.33563 -28.65555 -25.98576 -25.19761 -24.30647 -23.81762 -23.12539 -22.06689 -21.63367 -21.03746 -20.06636 -18.88548 -18.19144 -17.03033 -16.57677 -16.57134 -15.94601 -15.54919 -14.94175 -14.66644 -14.60330 -14.48908 -14.42082 -14.03337 -13.83778 -13.37645 -13.15355 -12.84211 -12.71461 -12.41240 -12.27113 -12.05486 -11.77775 -11.56748 -11.35367 -11.25360 -11.15526 -10.99059 -10.93044 -10.80231 -10.67338 -10.54889 -10.21206 -9.96401 -9.86297 -9.67614 -9.45553 -9.23984 -8.92586 -8.69914 -8.33297 -6.61130 -5.74192 -3.09115 0.68023 2.01320 2.13014 2.58528 2.87585 3.42153 3.50819 3.53753 3.85042 4.17333 4.28214 4.40588 4.56462 4.59859 4.71385 4.84727 4.88303 4.96444 4.98906 5.19589 5.31763 5.40355 5.41511 5.54086 5.58854 5.72330 5.72727 5.76919 5.84504 5.86847 5.95871 6.12829 6.19660 6.24436 6.28081 6.47237 6.54149 6.57681 6.73418 6.87108 6.95619 7.02298 7.09533 7.28766 7.48859 7.70824 7.88023 7.94965 8.02256 8.49724 9.27155 9.93410 10.50092 11.34445 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.003686 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.312706 B = 7594.997017 C = 8660.013329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.003 3.997 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.586 5.586 10 C 0.173 3.827 11 C -0.136 4.136 12 C -0.088 4.088 13 C -0.119 4.119 14 H 0.120 0.880 15 C 0.158 3.842 16 H 0.075 0.925 17 C -0.138 4.138 18 C -0.119 4.119 19 C -0.140 4.140 20 C 0.091 3.909 21 N -0.603 5.603 22 C 0.585 3.415 23 O -0.471 6.471 24 C -0.057 4.057 25 C 0.026 3.974 26 N -0.268 5.268 27 N -0.059 5.059 28 N -0.382 5.382 29 H 0.451 0.549 30 C 0.153 3.847 31 H 0.252 0.748 32 H 0.078 0.922 33 H 0.013 0.987 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.204 0.796 47 H 0.013 0.987 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.537 -21.376 -3.383 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.196 4.196 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.219 1.219 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.308 5.308 10 C 0.047 3.953 11 C -0.175 4.175 12 C -0.125 4.125 13 C -0.139 4.139 14 H 0.137 0.863 15 C 0.056 3.944 16 H 0.093 0.907 17 C -0.176 4.176 18 C -0.157 4.157 19 C -0.179 4.179 20 C -0.033 4.033 21 N -0.337 5.337 22 C 0.369 3.631 23 O -0.342 6.342 24 C -0.191 4.191 25 C -0.133 4.133 26 N -0.134 5.134 27 N -0.041 5.041 28 N -0.115 5.115 29 H 0.304 0.696 30 C 0.026 3.974 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.221 0.779 47 H 0.031 0.969 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.606 -21.591 -4.506 22.532 hybrid contribution -0.161 1.158 1.145 1.636 sum 4.445 -20.434 -3.361 21.180 Atomic orbital electron populations 1.70146 1.05345 1.25331 1.53255 1.24900 0.95033 0.98365 1.01258 0.86365 0.79728 0.84378 0.77200 1.20234 1.21584 1.21930 1.19178 0.95436 0.86206 1.37236 0.91742 1.43966 1.42360 1.00223 1.44288 1.20706 0.89212 0.98806 0.86599 1.22077 1.00050 0.96044 0.99301 1.21514 0.96293 0.97493 0.97239 1.22514 1.01764 0.91189 0.98392 0.86260 1.21547 0.94815 0.91786 0.86232 0.90664 1.22152 0.98049 0.94838 1.02527 1.21523 1.01716 0.95869 0.96559 1.22012 0.96881 0.99812 0.99158 1.22102 0.98890 0.80969 1.01335 1.48102 1.65584 1.08584 1.11466 1.16889 0.78397 0.86879 0.80922 1.90976 1.48492 1.11881 1.82818 1.22771 1.08691 0.85821 1.01803 1.23933 0.99606 1.00207 0.89544 1.74972 1.15927 0.97599 1.24874 1.78186 1.09915 1.21866 0.94091 1.46430 1.38550 1.09973 1.16517 0.69603 1.20958 0.96906 0.86980 0.92582 0.93854 0.90419 0.96863 0.92262 0.94215 0.93981 0.94077 0.90731 0.89625 0.91408 0.91577 0.91463 0.90317 0.90033 0.91162 0.77922 0.96913 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 11.54 55.49 0.64 -25.85 16 2 C 0.00 0.09 4.73 -17.43 -0.08 0.01 16 3 Si 0.89 22.07 29.62 -169.99 -5.03 17.03 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 7 C -0.25 -7.02 9.55 -15.06 -0.14 -7.16 16 8 H 0.06 1.78 7.93 -52.49 -0.42 1.36 16 9 N -0.59 -14.88 3.00 -172.32 -0.52 -15.39 16 10 C 0.17 4.25 5.37 -3.71 -0.02 4.23 16 11 C -0.14 -2.80 6.08 -26.61 -0.16 -2.96 16 12 C -0.09 -1.54 3.59 -26.69 -0.10 -1.64 16 13 C -0.12 -2.02 1.58 -90.50 -0.14 -2.17 16 14 H 0.12 2.36 5.48 -53.99 -0.30 2.07 16 15 C 0.16 1.96 2.64 -67.44 -0.18 1.78 16 16 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.14 -1.47 4.66 -26.61 -0.12 -1.60 16 18 C -0.12 -0.88 5.88 -26.69 -0.16 -1.03 16 19 C -0.14 -0.78 6.05 -26.61 -0.16 -0.94 16 20 C 0.09 0.60 5.92 -3.71 -0.02 0.58 16 21 N -0.60 -6.31 2.95 -166.33 -0.49 -6.80 16 22 C 0.58 7.35 6.17 -12.61 -0.08 7.27 16 23 O -0.47 -7.69 11.16 5.27 0.06 -7.63 16 24 C -0.06 -0.62 6.52 -82.33 -0.54 -1.15 16 25 C 0.03 0.29 11.95 -17.36 -0.21 0.09 16 26 N -0.27 -3.35 12.35 30.47 0.38 -2.97 16 27 N -0.06 -0.66 13.35 60.35 0.81 0.15 16 28 N -0.38 -3.36 5.83 33.31 0.19 -3.17 16 29 H 0.45 2.53 6.45 -190.32 -1.23 1.31 16 30 C 0.15 3.13 5.69 -3.71 -0.02 3.11 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.08 2.15 6.15 -51.93 -0.32 1.83 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.70 5.31 -51.93 -0.28 0.43 16 37 H 0.04 0.70 6.30 -51.93 -0.33 0.38 16 38 H 0.07 0.88 6.05 -51.93 -0.31 0.57 16 39 H 0.09 1.00 6.81 -51.93 -0.35 0.65 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.39 3.50 -51.93 -0.18 0.20 16 46 H 0.20 1.97 8.06 -52.48 -0.42 1.55 16 47 H 0.01 0.26 6.58 -51.93 -0.34 -0.08 16 48 H 0.05 0.99 7.93 -51.93 -0.41 0.58 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -32.96 355.61 -8.57 -41.53 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.83 Total: -0.68 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.13 Total: -1.58 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 1.01 Total: -54.04 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.06 Total: -7.63 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.96 -8.57 -41.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053090536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.910 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds