Wall clock time and date at job start Tue Mar 31 2020 18:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46692 * 299.99940 * 3 2 1 6 6 H 1.48497 * 109.47525 * 60.00018 * 3 2 1 7 7 C 1.38814 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99901 * 204.13944 * 7 2 1 9 9 N 1.36942 * 120.00037 * 24.14756 * 7 2 1 10 10 C 1.46928 * 120.62818 * 26.09997 * 9 7 2 11 11 C 1.53195 * 108.77356 * 126.41588 * 10 9 7 12 12 C 1.53042 * 109.31129 * 54.63313 * 11 10 9 13 13 C 1.53040 * 109.53787 * 298.63472 * 12 11 10 14 14 H 1.08998 * 109.49763 * 301.37790 * 13 12 11 15 15 C 1.53006 * 109.49735 * 181.31714 * 13 12 11 16 16 H 1.08994 * 109.58454 * 187.25798 * 15 13 12 17 17 C 1.53196 * 109.58380 * 307.53992 * 15 13 12 18 18 C 1.53040 * 109.30870 * 174.56072 * 17 15 13 19 19 C 1.53030 * 109.54214 * 298.63479 * 18 17 15 20 20 C 1.53198 * 109.31268 * 61.36985 * 19 18 17 21 21 N 1.46927 * 108.88906 * 305.28882 * 20 19 18 22 22 C 1.34773 * 120.63611 * 233.68508 * 21 20 19 23 23 O 1.21613 * 120.00468 * 187.48789 * 22 21 20 24 24 C 1.47238 * 119.99653 * 7.47994 * 22 21 20 25 25 C 1.37002 * 127.19144 * 205.23653 * 24 22 21 26 26 N 1.33316 * 106.37490 * 179.97438 * 25 24 22 27 27 N 1.28514 * 109.43990 * 359.97438 * 26 25 24 28 28 N 1.28716 * 110.63547 * 359.75615 * 27 26 25 29 29 H 0.97005 * 126.03832 * 180.26166 * 28 27 26 30 30 C 1.46927 * 120.63116 * 206.12788 * 9 7 2 31 31 H 0.97006 * 119.99682 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.58918 * 6.63127 * 10 9 7 33 33 H 1.08998 * 109.70224 * 246.27031 * 10 9 7 34 34 H 1.09002 * 109.50049 * 294.68255 * 11 10 9 35 35 H 1.08997 * 109.52439 * 174.60297 * 11 10 9 36 36 H 1.09003 * 109.45863 * 178.60963 * 12 11 10 37 37 H 1.08997 * 109.44999 * 58.64773 * 12 11 10 38 38 H 1.09000 * 109.49945 * 54.61832 * 17 15 13 39 39 H 1.08999 * 109.52538 * 294.53366 * 17 15 13 40 40 H 1.09004 * 109.45663 * 178.61078 * 18 17 15 41 41 H 1.09003 * 109.45591 * 58.66231 * 18 17 15 42 42 H 1.08991 * 109.50186 * 301.41394 * 19 18 17 43 43 H 1.09002 * 109.52688 * 181.33020 * 19 18 17 44 44 H 1.09000 * 109.58990 * 65.14921 * 20 19 18 45 45 H 1.08996 * 109.58565 * 185.43947 * 20 19 18 46 46 H 1.08007 * 126.81173 * 0.02562 * 25 24 22 47 47 H 1.08990 * 109.58666 * 113.79455 * 30 9 7 48 48 H 1.08999 * 109.58456 * 353.36618 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0193 -1.2430 0.3830 9 7 1.4153 -2.3365 -0.4841 10 6 0.3470 -2.2505 -1.4891 11 6 0.7211 -3.1343 -2.6832 12 6 1.0085 -4.5546 -2.1912 13 6 2.1903 -4.5303 -1.2192 14 1 3.0647 -4.1147 -1.7200 15 6 2.4978 -5.9549 -0.7533 16 1 3.2512 -5.9273 0.0338 17 6 1.2192 -6.6072 -0.2178 18 6 1.5020 -8.0729 0.1197 19 6 1.9294 -8.8167 -1.1476 20 6 3.2160 -8.1895 -1.6936 21 7 2.9983 -6.7494 -1.8870 22 6 3.2492 -6.1707 -3.0781 23 8 3.1966 -4.9609 -3.1896 24 6 3.5871 -7.0035 -4.2444 25 6 4.3099 -6.6303 -5.3469 26 7 4.3652 -7.7006 -6.1399 27 7 3.7318 -8.6740 -5.5895 28 7 3.2500 -8.3156 -4.4509 29 1 2.7369 -8.8748 -3.8468 30 6 1.8329 -3.6624 -0.0085 31 1 -0.4850 0.8401 0.0004 32 1 0.2381 -1.2174 -1.8191 33 1 -0.5920 -2.5973 -1.0578 34 1 1.6092 -2.7313 -3.1701 35 1 -0.1052 -3.1555 -3.3937 36 1 1.2509 -5.1915 -3.0419 37 1 0.1282 -4.9476 -1.6827 38 1 0.4380 -6.5527 -0.9759 39 1 0.8918 -6.0836 0.6804 40 1 0.6003 -8.5328 0.5241 41 1 2.3004 -8.1276 0.8597 42 1 1.1415 -8.7414 -1.8969 43 1 2.1079 -9.8658 -0.9116 44 1 4.0281 -8.3441 -0.9831 45 1 3.4717 -8.6516 -2.6471 46 1 4.7486 -5.6616 -5.5356 47 1 1.0163 -4.1259 0.5450 48 1 2.7043 -3.5609 0.6383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053090536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:33 Heat of formation + Delta-G solvation = 103.291569 kcal Electronic energy + Delta-G solvation = -30868.875809 eV Core-core repulsion = 26962.338458 eV Total energy + Delta-G solvation = -3906.537351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.55126 -41.97694 -38.94552 -38.45184 -35.62183 -34.74036 -33.77882 -33.21435 -32.31769 -32.10013 -29.86736 -27.18647 -26.98053 -25.10779 -24.75540 -24.16101 -23.79271 -22.68457 -22.13266 -21.13200 -20.26128 -19.06387 -18.57981 -17.93520 -17.45441 -17.07395 -16.67182 -16.50614 -15.80428 -15.67886 -15.53022 -15.44268 -15.27725 -15.10935 -14.55446 -14.46156 -14.28543 -14.09568 -13.77749 -13.32814 -13.23450 -13.11333 -13.01080 -12.70849 -12.45168 -12.37638 -12.23807 -12.12887 -12.05165 -11.96517 -11.78804 -11.67315 -11.53579 -11.32098 -11.08713 -10.97670 -10.61933 -10.52947 -10.06384 -9.65314 -8.67347 -7.88931 -5.26667 -0.18382 1.14140 1.32160 1.43355 1.46843 1.57257 1.71431 1.98340 2.51480 3.04432 3.23976 3.44968 3.59723 3.69106 3.86370 3.88067 3.90721 4.00119 4.05517 4.18088 4.21359 4.29877 4.33862 4.45702 4.53494 4.64190 4.74965 4.79174 4.85126 4.89305 4.90580 4.91995 5.04534 5.08279 5.11230 5.19187 5.25452 5.35226 5.40228 5.43246 5.50002 5.55165 5.56939 5.63439 5.69321 5.90413 6.23636 6.37725 6.97497 7.13935 7.14292 7.88660 8.40556 9.17724 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.003686 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.312706 B = 7594.997017 C = 8660.013329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.048 4.048 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.263 4.263 8 H 0.063 0.937 9 N -0.606 5.606 10 C 0.182 3.818 11 C -0.125 4.125 12 C -0.075 4.075 13 C -0.105 4.105 14 H 0.096 0.904 15 C 0.165 3.835 16 H 0.084 0.916 17 C -0.134 4.134 18 C -0.115 4.115 19 C -0.136 4.136 20 C 0.087 3.913 21 N -0.596 5.596 22 C 0.585 3.415 23 O -0.516 6.516 24 C -0.056 4.056 25 C 0.021 3.979 26 N -0.292 5.292 27 N -0.061 5.061 28 N -0.357 5.357 29 H 0.466 0.534 30 C 0.150 3.850 31 H 0.249 0.751 32 H 0.040 0.960 33 H -0.004 1.004 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.212 0.788 47 H 0.018 0.982 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.326 -24.474 -3.179 25.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.244 4.244 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.393 4.393 8 H 0.081 0.919 9 N -0.329 5.329 10 C 0.056 3.944 11 C -0.164 4.164 12 C -0.112 4.112 13 C -0.125 4.125 14 H 0.113 0.887 15 C 0.063 3.937 16 H 0.102 0.898 17 C -0.173 4.173 18 C -0.152 4.152 19 C -0.173 4.173 20 C -0.035 4.035 21 N -0.329 5.329 22 C 0.370 3.630 23 O -0.391 6.391 24 C -0.191 4.191 25 C -0.138 4.138 26 N -0.157 5.157 27 N -0.043 5.043 28 N -0.093 5.093 29 H 0.322 0.678 30 C 0.025 3.975 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.014 0.986 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.130 0.870 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.229 0.771 47 H 0.036 0.964 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.407 -24.780 -4.283 25.722 hybrid contribution -0.405 2.057 1.125 2.379 sum 5.002 -22.723 -3.158 23.481 Atomic orbital electron populations 1.70263 1.06715 1.25765 1.54787 1.25631 0.95784 1.01316 1.01626 0.85363 0.78869 0.80363 0.76830 1.19268 1.21865 1.21622 1.19478 0.95516 0.87584 1.36704 0.91924 1.44220 1.42411 1.01491 1.44754 1.20486 0.88666 0.97416 0.87832 1.21916 0.99589 0.97256 0.97672 1.21408 0.96702 0.95333 0.97801 1.22202 1.00433 0.93712 0.96126 0.88656 1.21304 0.96221 0.89435 0.86788 0.89838 1.22089 0.96445 0.97300 1.01415 1.21503 1.02681 0.93243 0.97805 1.22036 0.96007 1.01177 0.98130 1.22405 1.00323 0.78194 1.02573 1.48117 1.64407 1.10251 1.10129 1.17051 0.77804 0.86457 0.81656 1.90973 1.50804 1.13765 1.83533 1.22413 1.09121 0.86374 1.01151 1.24178 0.99602 1.00484 0.89586 1.74979 1.16974 0.98088 1.25655 1.78134 1.09888 1.21667 0.94588 1.46384 1.37599 1.09286 1.15988 0.67768 1.21130 0.96720 0.85480 0.94219 0.94187 0.94107 0.98597 0.94108 0.92794 0.92552 0.93476 0.91745 0.91006 0.90346 0.90676 0.91229 0.87025 0.88411 0.89942 0.77142 0.96429 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 11.54 21.65 0.25 -56.59 16 2 C -0.05 -2.78 4.73 84.86 0.40 -2.37 16 3 Si 0.96 46.51 29.62 68.60 2.03 48.55 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 7 C -0.26 -15.10 9.55 84.03 0.80 -14.30 16 8 H 0.06 3.54 7.93 -2.91 -0.02 3.52 16 9 N -0.61 -31.78 3.00 -699.11 -2.09 -33.87 16 10 C 0.18 9.35 5.37 86.36 0.46 9.81 16 11 C -0.13 -5.29 6.08 30.67 0.19 -5.11 16 12 C -0.08 -2.61 3.59 30.62 0.11 -2.50 16 13 C -0.10 -3.56 1.58 -10.71 -0.02 -3.58 16 14 H 0.10 3.84 5.48 -35.00 -0.19 3.65 16 15 C 0.17 3.80 2.64 44.92 0.12 3.92 16 16 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 17 C -0.13 -2.58 4.66 30.67 0.14 -2.44 16 18 C -0.11 -1.24 5.88 30.62 0.18 -1.06 16 19 C -0.14 -0.86 6.05 30.67 0.19 -0.67 16 20 C 0.09 0.79 5.92 86.36 0.51 1.30 16 21 N -0.60 -10.98 2.95 -798.40 -2.36 -13.34 16 22 C 0.59 13.79 6.17 86.61 0.53 14.33 16 23 O -0.52 -16.76 11.16 -4.07 -0.05 -16.81 16 24 C -0.06 -1.10 6.52 40.41 0.26 -0.84 16 25 C 0.02 0.45 11.95 84.18 1.01 1.45 16 26 N -0.29 -6.87 12.35 -57.50 -0.71 -7.58 16 27 N -0.06 -1.22 13.35 37.02 0.49 -0.73 16 28 N -0.36 -5.24 5.83 -48.52 -0.28 -5.52 16 29 H 0.47 3.43 6.45 -219.89 -1.42 2.01 16 30 C 0.15 6.26 5.69 86.36 0.49 6.75 16 31 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 32 H 0.04 2.37 6.15 -2.39 -0.01 2.35 16 33 H 0.00 -0.22 8.14 -2.39 -0.02 -0.23 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.06 1.83 5.31 -2.39 -0.01 1.82 16 37 H 0.05 1.58 6.30 -2.39 -0.02 1.56 16 38 H 0.06 1.38 6.05 -2.39 -0.01 1.36 16 39 H 0.07 1.59 6.81 -2.39 -0.02 1.57 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.08 0.55 3.50 -2.39 -0.01 0.54 16 46 H 0.21 4.01 8.06 -2.91 -0.02 3.99 16 47 H 0.02 0.73 6.58 -2.39 -0.02 0.71 16 48 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 Total: -1.00 -74.67 355.61 2.07 -72.61 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -0.60 Total: 8.60 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 5.38 Total: 4.69 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -4.70 Total: -117.63 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.05 Total: -16.81 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.55 kcal Total: -74.67 2.07 -72.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053090536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.897 kcal (2) G-P(sol) polarization free energy of solvation -74.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds