Wall clock time and date at job start Tue Mar 31 2020 18:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00058 * 2 1 4 4 H 1.48502 * 109.47056 * 267.99995 * 3 2 1 5 5 H 1.48504 * 109.47201 * 27.99915 * 3 2 1 6 6 H 1.48503 * 109.46944 * 147.99651 * 3 2 1 7 7 C 1.38815 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99952 * 353.26154 * 7 2 1 9 9 N 1.36939 * 119.99564 * 173.26405 * 7 2 1 10 10 C 1.46926 * 120.62811 * 141.22271 * 9 7 2 11 11 C 1.53187 * 108.77601 * 126.38835 * 10 9 7 12 12 C 1.53032 * 109.31309 * 54.63108 * 11 10 9 13 13 C 1.53036 * 109.54282 * 298.63368 * 12 11 10 14 14 H 1.08993 * 109.49944 * 301.38426 * 13 12 11 15 15 C 1.53002 * 109.50162 * 181.31707 * 13 12 11 16 16 H 1.08994 * 109.58225 * 52.44585 * 15 13 12 17 17 C 1.53193 * 109.58352 * 292.02111 * 15 13 12 18 18 C 1.53039 * 109.31068 * 185.58026 * 17 15 13 19 19 C 1.53041 * 109.54175 * 61.36006 * 18 17 15 20 20 C 1.53192 * 109.31232 * 298.63806 * 19 18 17 21 21 N 1.46922 * 109.58534 * 172.72926 * 15 13 12 22 22 C 1.34774 * 120.63248 * 353.37207 * 21 15 13 23 23 O 1.21614 * 120.00316 * 358.68557 * 22 21 15 24 24 C 1.47233 * 119.99799 * 178.67959 * 22 21 15 25 25 C 1.37008 * 127.18976 * 209.42625 * 24 22 21 26 26 N 1.33324 * 106.37415 * 179.97438 * 25 24 22 27 27 N 1.28513 * 109.43556 * 359.97438 * 26 25 24 28 28 N 1.28715 * 110.64040 * 359.75815 * 27 26 25 29 29 H 0.97002 * 126.03609 * 180.26724 * 28 27 26 30 30 C 1.46933 * 120.60626 * 321.19586 * 9 7 2 31 31 H 0.97006 * 119.99752 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.58722 * 6.59833 * 10 9 7 33 33 H 1.08999 * 109.70025 * 246.24693 * 10 9 7 34 34 H 1.09006 * 109.49845 * 294.67896 * 11 10 9 35 35 H 1.08997 * 109.49906 * 174.58819 * 11 10 9 36 36 H 1.09004 * 109.46118 * 178.61230 * 12 11 10 37 37 H 1.09006 * 109.46269 * 58.66130 * 12 11 10 38 38 H 1.08992 * 109.50267 * 65.62157 * 17 15 13 39 39 H 1.09005 * 109.49792 * 305.52209 * 17 15 13 40 40 H 1.09005 * 109.46043 * 301.33947 * 18 17 15 41 41 H 1.08999 * 109.46353 * 181.38816 * 18 17 15 42 42 H 1.08997 * 109.49558 * 58.58826 * 19 18 17 43 43 H 1.09004 * 109.49564 * 178.65409 * 19 18 17 44 44 H 1.08995 * 109.58634 * 174.42425 * 20 19 18 45 45 H 1.09005 * 109.58922 * 294.70281 * 20 19 18 46 46 H 1.08000 * 126.81359 * 359.97438 * 25 24 22 47 47 H 1.08994 * 109.56253 * 113.80808 * 30 9 7 48 48 H 1.08999 * 109.61471 * 353.37995 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5400 2.0220 -1.3992 5 1 1.4271 2.6646 0.6573 6 1 3.5259 1.4527 0.7420 7 6 2.0102 -1.2022 -0.0005 8 1 1.4757 -2.1343 0.1088 9 7 3.3725 -1.2062 -0.1396 10 6 4.2006 -2.1463 0.6280 11 6 5.0958 -2.9217 -0.3435 12 6 5.8938 -1.9324 -1.1958 13 6 4.9310 -1.0672 -2.0121 14 1 4.3144 -1.7062 -2.6442 15 6 5.7305 -0.1008 -2.8884 16 1 6.4663 -0.6574 -3.4687 17 6 6.4415 0.9271 -2.0026 18 6 7.1245 1.9719 -2.8880 19 6 6.0710 2.7016 -3.7246 20 6 5.3559 1.6937 -4.6299 21 7 4.8197 0.6079 -3.7977 22 6 3.5174 0.2682 -3.8677 23 8 3.0909 -0.6484 -3.1916 24 6 2.6109 1.0068 -4.7624 25 6 1.2673 1.2141 -4.5928 26 7 0.8621 1.9302 -5.6419 27 7 1.8628 2.1605 -6.4146 28 7 2.9362 1.6362 -5.9354 29 1 3.8191 1.6774 -6.3351 30 6 4.0333 -0.2707 -1.0600 31 1 -0.4850 0.8401 0.0004 32 1 3.5584 -2.8422 1.1679 33 1 4.8202 -1.5963 1.3363 34 1 4.4773 -3.5434 -0.9909 35 1 5.7827 -3.5532 0.2199 36 1 6.5500 -2.4816 -1.8711 37 1 6.4934 -1.2946 -0.5462 38 1 7.1896 0.4241 -1.3901 39 1 5.7125 1.4177 -1.3575 40 1 7.8356 1.4778 -3.5502 41 1 7.6519 2.6907 -2.2608 42 1 5.3455 3.1753 -3.0633 43 1 6.5556 3.4618 -4.3373 44 1 4.5392 2.1892 -5.1547 45 1 6.0622 1.2873 -5.3539 46 1 0.6573 0.8664 -3.7721 47 1 4.6389 0.4346 -0.4910 48 1 3.2811 0.2705 -1.6341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053090537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:37 Heat of formation + Delta-G solvation = 136.085555 kcal Electronic energy + Delta-G solvation = -32057.353588 eV Core-core repulsion = 28152.238290 eV Total energy + Delta-G solvation = -3905.115297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.39026 -40.88608 -37.58454 -37.34236 -34.19650 -33.32543 -32.75070 -32.16135 -31.01836 -30.52688 -28.83269 -25.90468 -25.15798 -24.29460 -23.71926 -23.03612 -22.24302 -21.38118 -20.88779 -19.98002 -19.12568 -17.90732 -16.94591 -16.67481 -16.38131 -15.99790 -15.32312 -15.07904 -14.66125 -14.45970 -14.24551 -14.16643 -13.95625 -13.84642 -13.56540 -13.37938 -12.90146 -12.78212 -12.50846 -12.13674 -12.09049 -11.84920 -11.49833 -11.36647 -11.22912 -11.20204 -10.95265 -10.92653 -10.84967 -10.54549 -10.51398 -10.26328 -10.03177 -9.75502 -9.54469 -9.45731 -9.17693 -8.87630 -8.47549 -8.44500 -6.58248 -5.79434 -3.26701 1.00235 2.31022 2.42086 2.70504 3.16544 3.32135 3.48344 3.51614 4.10351 4.33606 4.54502 4.58415 4.61912 4.76954 4.84796 4.95651 5.00953 5.09977 5.13874 5.23359 5.26106 5.41297 5.45403 5.50292 5.53840 5.64626 5.66076 5.71367 5.78516 5.89916 5.99881 6.15140 6.17105 6.19871 6.22303 6.30081 6.42863 6.49040 6.53952 6.55631 6.72383 6.82978 6.91561 6.99305 7.17671 7.31939 8.17446 8.25690 8.30708 8.53580 9.13238 9.87731 10.31922 11.36971 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.007145 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.239570 B = 3917.829471 C = 5347.870926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.032 3.968 3 Si 0.889 3.111 4 H -0.293 1.293 5 H -0.308 1.308 6 H -0.272 1.272 7 C -0.243 4.243 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.148 3.852 11 C -0.133 4.133 12 C -0.108 4.108 13 C -0.118 4.118 14 H 0.119 0.881 15 C 0.159 3.841 16 H 0.072 0.928 17 C -0.143 4.143 18 C -0.117 4.117 19 C -0.136 4.136 20 C 0.092 3.908 21 N -0.607 5.607 22 C 0.569 3.431 23 O -0.441 6.441 24 C -0.056 4.056 25 C 0.034 3.966 26 N -0.266 5.266 27 N -0.064 5.064 28 N -0.387 5.387 29 H 0.448 0.552 30 C 0.135 3.865 31 H 0.260 0.740 32 H 0.060 0.940 33 H 0.017 0.983 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.208 0.792 47 H 0.012 0.988 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.111 3.349 -10.633 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.166 4.166 3 Si 0.722 3.278 4 H -0.221 1.221 5 H -0.236 1.236 6 H -0.197 1.197 7 C -0.372 4.372 8 H 0.096 0.904 9 N -0.325 5.325 10 C 0.022 3.978 11 C -0.172 4.172 12 C -0.146 4.146 13 C -0.137 4.137 14 H 0.136 0.864 15 C 0.056 3.944 16 H 0.090 0.910 17 C -0.181 4.181 18 C -0.155 4.155 19 C -0.174 4.174 20 C -0.033 4.033 21 N -0.343 5.343 22 C 0.353 3.647 23 O -0.310 6.310 24 C -0.190 4.190 25 C -0.124 4.124 26 N -0.132 5.132 27 N -0.046 5.046 28 N -0.119 5.119 29 H 0.300 0.700 30 C 0.011 3.989 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.225 0.775 47 H 0.029 0.971 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.948 3.708 -11.301 19.895 hybrid contribution 1.579 0.642 0.478 1.771 sum 17.528 4.350 -10.823 21.054 Atomic orbital electron populations 1.69745 1.05529 1.26098 1.54703 1.25405 0.95076 0.97346 0.98809 0.86867 0.79533 0.84587 0.76838 1.22085 1.23629 1.19711 1.18804 0.80175 0.93439 1.44829 0.90438 1.44200 1.03285 1.40730 1.44262 1.20933 0.92704 0.92124 0.92074 1.21962 0.98457 0.97759 0.98988 1.21546 0.97238 0.97722 0.98096 1.22549 0.96183 0.97559 0.97457 0.86381 1.21445 0.90711 0.92379 0.89828 0.90992 1.22187 1.00316 0.97151 0.98451 1.21516 0.97313 0.98210 0.98463 1.21912 0.98935 0.97555 0.99031 1.22075 0.98457 0.88752 0.93974 1.47945 1.08056 1.35729 1.42594 1.16995 0.81046 0.84275 0.82338 1.91115 1.74598 1.26238 1.39073 1.22645 0.97766 1.06376 0.92192 1.24110 0.91663 0.97714 0.98926 1.74968 1.20551 1.14906 1.02766 1.78124 0.88964 1.16423 1.21041 1.46295 1.12119 1.36444 1.17006 0.70015 1.21865 0.94777 0.92003 0.90297 0.93003 0.92167 0.96506 0.92092 0.93122 0.93543 0.93016 0.90245 0.90451 0.91771 0.91511 0.91138 0.90527 0.90806 0.90468 0.77532 0.97077 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.62 13.97 55.49 0.78 -27.84 16 2 C 0.03 0.95 5.40 -17.43 -0.09 0.85 16 3 Si 0.89 23.34 24.33 -169.99 -4.14 19.20 16 4 H -0.29 -7.39 6.68 56.52 0.38 -7.01 16 5 H -0.31 -8.26 7.11 56.52 0.40 -7.86 16 6 H -0.27 -7.01 6.24 56.52 0.35 -6.66 16 7 C -0.24 -7.02 10.01 -15.06 -0.15 -7.17 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 9 N -0.60 -14.73 2.67 -172.32 -0.46 -15.19 16 10 C 0.15 3.03 6.52 -3.71 -0.02 3.01 16 11 C -0.13 -2.23 6.08 -26.62 -0.16 -2.39 16 12 C -0.11 -1.65 4.95 -26.70 -0.13 -1.78 16 13 C -0.12 -2.05 1.57 -90.50 -0.14 -2.19 16 14 H 0.12 2.36 5.60 -53.80 -0.30 2.06 16 15 C 0.16 2.13 2.64 -67.60 -0.18 1.96 16 16 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 17 C -0.14 -1.76 4.66 -26.61 -0.12 -1.89 16 18 C -0.12 -1.06 5.88 -26.69 -0.16 -1.22 16 19 C -0.14 -1.22 6.08 -26.61 -0.16 -1.38 16 20 C 0.09 0.83 5.70 -3.71 -0.02 0.80 16 21 N -0.61 -8.11 2.94 -166.56 -0.49 -8.60 16 22 C 0.57 9.60 6.54 -12.61 -0.08 9.52 16 23 O -0.44 -9.28 10.55 5.27 0.06 -9.22 16 24 C -0.06 -0.88 6.48 -82.33 -0.53 -1.41 16 25 C 0.03 0.60 11.98 -17.35 -0.21 0.40 16 26 N -0.27 -4.58 12.35 30.47 0.38 -4.20 16 27 N -0.06 -0.94 13.35 60.35 0.81 -0.13 16 28 N -0.39 -4.68 5.77 33.31 0.19 -4.49 16 29 H 0.45 3.49 6.50 -190.33 -1.24 2.25 16 30 C 0.14 2.96 2.08 -3.71 -0.01 2.95 16 31 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 32 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.76 6.87 -51.93 -0.36 0.40 16 38 H 0.08 0.90 6.98 -51.93 -0.36 0.53 16 39 H 0.08 1.21 5.89 -51.93 -0.31 0.90 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.63 3.78 -51.93 -0.20 0.44 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.21 3.90 8.06 -52.49 -0.42 3.48 16 47 H 0.01 0.26 4.40 -51.93 -0.23 0.03 16 48 H 0.09 2.07 1.96 -51.93 -0.10 1.97 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -34.63 348.28 -7.60 -42.22 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.78 Total: 2.95 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.18 Total: 0.05 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 1.20 Total: -60.45 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.06 Total: -9.22 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.14 Total: 19.20 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.63 -7.60 -42.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053090537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.308 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds