Wall clock time and date at job start Tue Mar 31 2020 18:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00058 * 2 1 4 4 H 1.48502 * 109.47056 * 267.99995 * 3 2 1 5 5 H 1.48504 * 109.47201 * 27.99915 * 3 2 1 6 6 H 1.48503 * 109.46944 * 147.99651 * 3 2 1 7 7 C 1.38815 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99952 * 353.26154 * 7 2 1 9 9 N 1.36939 * 119.99564 * 173.26405 * 7 2 1 10 10 C 1.46926 * 120.62811 * 141.22271 * 9 7 2 11 11 C 1.53187 * 108.77601 * 126.38835 * 10 9 7 12 12 C 1.53032 * 109.31309 * 54.63108 * 11 10 9 13 13 C 1.53036 * 109.54282 * 298.63368 * 12 11 10 14 14 H 1.08993 * 109.49944 * 301.38426 * 13 12 11 15 15 C 1.53002 * 109.50162 * 181.31707 * 13 12 11 16 16 H 1.08994 * 109.58225 * 52.44585 * 15 13 12 17 17 C 1.53193 * 109.58352 * 292.02111 * 15 13 12 18 18 C 1.53039 * 109.31068 * 185.58026 * 17 15 13 19 19 C 1.53041 * 109.54175 * 61.36006 * 18 17 15 20 20 C 1.53192 * 109.31232 * 298.63806 * 19 18 17 21 21 N 1.46922 * 109.58534 * 172.72926 * 15 13 12 22 22 C 1.34774 * 120.63248 * 353.37207 * 21 15 13 23 23 O 1.21614 * 120.00316 * 358.68557 * 22 21 15 24 24 C 1.47233 * 119.99799 * 178.67959 * 22 21 15 25 25 C 1.37008 * 127.18976 * 209.42625 * 24 22 21 26 26 N 1.33324 * 106.37415 * 179.97438 * 25 24 22 27 27 N 1.28513 * 109.43556 * 359.97438 * 26 25 24 28 28 N 1.28715 * 110.64040 * 359.75815 * 27 26 25 29 29 H 0.97002 * 126.03609 * 180.26724 * 28 27 26 30 30 C 1.46933 * 120.60626 * 321.19586 * 9 7 2 31 31 H 0.97006 * 119.99752 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.58722 * 6.59833 * 10 9 7 33 33 H 1.08999 * 109.70025 * 246.24693 * 10 9 7 34 34 H 1.09006 * 109.49845 * 294.67896 * 11 10 9 35 35 H 1.08997 * 109.49906 * 174.58819 * 11 10 9 36 36 H 1.09004 * 109.46118 * 178.61230 * 12 11 10 37 37 H 1.09006 * 109.46269 * 58.66130 * 12 11 10 38 38 H 1.08992 * 109.50267 * 65.62157 * 17 15 13 39 39 H 1.09005 * 109.49792 * 305.52209 * 17 15 13 40 40 H 1.09005 * 109.46043 * 301.33947 * 18 17 15 41 41 H 1.08999 * 109.46353 * 181.38816 * 18 17 15 42 42 H 1.08997 * 109.49558 * 58.58826 * 19 18 17 43 43 H 1.09004 * 109.49564 * 178.65409 * 19 18 17 44 44 H 1.08995 * 109.58634 * 174.42425 * 20 19 18 45 45 H 1.09005 * 109.58922 * 294.70281 * 20 19 18 46 46 H 1.08000 * 126.81359 * 359.97438 * 25 24 22 47 47 H 1.08994 * 109.56253 * 113.80808 * 30 9 7 48 48 H 1.08999 * 109.61471 * 353.37995 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5400 2.0220 -1.3992 5 1 1.4271 2.6646 0.6573 6 1 3.5259 1.4527 0.7420 7 6 2.0102 -1.2022 -0.0005 8 1 1.4757 -2.1343 0.1088 9 7 3.3725 -1.2062 -0.1396 10 6 4.2006 -2.1463 0.6280 11 6 5.0958 -2.9217 -0.3435 12 6 5.8938 -1.9324 -1.1958 13 6 4.9310 -1.0672 -2.0121 14 1 4.3144 -1.7062 -2.6442 15 6 5.7305 -0.1008 -2.8884 16 1 6.4663 -0.6574 -3.4687 17 6 6.4415 0.9271 -2.0026 18 6 7.1245 1.9719 -2.8880 19 6 6.0710 2.7016 -3.7246 20 6 5.3559 1.6937 -4.6299 21 7 4.8197 0.6079 -3.7977 22 6 3.5174 0.2682 -3.8677 23 8 3.0909 -0.6484 -3.1916 24 6 2.6109 1.0068 -4.7624 25 6 1.2673 1.2141 -4.5928 26 7 0.8621 1.9302 -5.6419 27 7 1.8628 2.1605 -6.4146 28 7 2.9362 1.6362 -5.9354 29 1 3.8191 1.6774 -6.3351 30 6 4.0333 -0.2707 -1.0600 31 1 -0.4850 0.8401 0.0004 32 1 3.5584 -2.8422 1.1679 33 1 4.8202 -1.5963 1.3363 34 1 4.4773 -3.5434 -0.9909 35 1 5.7827 -3.5532 0.2199 36 1 6.5500 -2.4816 -1.8711 37 1 6.4934 -1.2946 -0.5462 38 1 7.1896 0.4241 -1.3901 39 1 5.7125 1.4177 -1.3575 40 1 7.8356 1.4778 -3.5502 41 1 7.6519 2.6907 -2.2608 42 1 5.3455 3.1753 -3.0633 43 1 6.5556 3.4618 -4.3373 44 1 4.5392 2.1892 -5.1547 45 1 6.0622 1.2873 -5.3539 46 1 0.6573 0.8664 -3.7721 47 1 4.6389 0.4346 -0.4910 48 1 3.2811 0.2705 -1.6341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053090537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:36 Heat of formation + Delta-G solvation = 110.038028 kcal Electronic energy + Delta-G solvation = -32058.483093 eV Core-core repulsion = 28152.238290 eV Total energy + Delta-G solvation = -3906.244803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.62314 -42.08132 -39.00579 -38.52280 -35.55136 -34.88885 -33.81888 -33.64241 -32.53198 -32.12888 -30.00557 -27.16234 -27.00297 -25.27113 -24.92097 -24.36756 -23.82635 -22.63401 -22.03067 -21.12410 -20.62097 -19.05745 -18.68310 -18.11983 -17.55918 -17.34955 -16.89536 -16.38701 -15.90384 -15.71239 -15.54413 -15.43426 -15.37944 -15.03803 -15.00909 -14.52576 -14.30715 -14.24735 -13.93693 -13.50434 -13.40313 -13.29687 -13.09571 -12.76150 -12.61757 -12.46269 -12.29204 -12.08845 -12.01558 -11.83742 -11.77688 -11.63336 -11.59363 -11.38326 -11.13531 -11.06758 -10.71462 -10.51517 -10.17206 -9.59905 -8.58415 -8.11347 -5.54017 -0.23253 1.04159 1.17326 1.25933 1.27833 1.37866 1.56888 2.01738 2.39077 3.01164 3.18610 3.35882 3.47956 3.56134 3.78222 3.85683 3.88251 3.92396 3.99359 4.10654 4.17008 4.24522 4.27418 4.36988 4.47537 4.53750 4.64513 4.71236 4.77282 4.83389 4.88054 4.91246 4.97134 5.02323 5.10161 5.15679 5.18137 5.22053 5.30338 5.38621 5.39442 5.48602 5.53278 5.57738 5.83023 6.03797 6.16350 6.20406 6.95177 7.04931 7.06620 7.71509 8.16411 9.08831 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.007145 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.239570 B = 3917.829471 C = 5347.870926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.022 4.022 3 Si 0.955 3.045 4 H -0.284 1.284 5 H -0.317 1.317 6 H -0.263 1.263 7 C -0.231 4.231 8 H 0.035 0.965 9 N -0.619 5.619 10 C 0.138 3.862 11 C -0.124 4.124 12 C -0.103 4.103 13 C -0.112 4.112 14 H 0.091 0.909 15 C 0.160 3.840 16 H 0.113 0.887 17 C -0.142 4.142 18 C -0.111 4.111 19 C -0.137 4.137 20 C 0.083 3.917 21 N -0.600 5.600 22 C 0.565 3.435 23 O -0.496 6.496 24 C -0.050 4.050 25 C 0.007 3.993 26 N -0.288 5.288 27 N -0.054 5.054 28 N -0.349 5.349 29 H 0.470 0.530 30 C 0.137 3.863 31 H 0.258 0.742 32 H 0.043 0.957 33 H 0.029 0.971 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.037 0.963 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.112 0.888 44 H 0.074 0.926 45 H 0.127 0.873 46 H 0.182 0.818 47 H 0.009 0.991 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.687 4.426 -12.845 26.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.216 4.216 3 Si 0.787 3.213 4 H -0.212 1.212 5 H -0.246 1.246 6 H -0.187 1.187 7 C -0.361 4.361 8 H 0.053 0.947 9 N -0.344 5.344 10 C 0.014 3.986 11 C -0.163 4.163 12 C -0.141 4.141 13 C -0.132 4.132 14 H 0.109 0.891 15 C 0.058 3.942 16 H 0.131 0.869 17 C -0.181 4.181 18 C -0.148 4.148 19 C -0.175 4.175 20 C -0.039 4.039 21 N -0.334 5.334 22 C 0.350 3.650 23 O -0.369 6.369 24 C -0.185 4.185 25 C -0.152 4.152 26 N -0.153 5.153 27 N -0.036 5.036 28 N -0.086 5.086 29 H 0.327 0.673 30 C 0.013 3.987 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.056 0.944 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.130 0.870 44 H 0.091 0.909 45 H 0.144 0.856 46 H 0.199 0.801 47 H 0.027 0.973 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.637 4.804 -13.553 25.979 hybrid contribution -0.113 0.227 1.148 1.176 sum 21.525 5.031 -12.405 25.347 Atomic orbital electron populations 1.69892 1.07167 1.26654 1.57208 1.25974 0.95666 1.00538 0.99467 0.85799 0.78185 0.80293 0.77073 1.21171 1.24616 1.18748 1.18658 0.82568 0.91807 1.43070 0.94743 1.44380 1.02006 1.41997 1.45972 1.21133 0.92785 0.91664 0.93054 1.21862 0.98241 0.97886 0.98341 1.21546 0.96836 0.97343 0.98386 1.22253 0.96127 0.97836 0.96947 0.89133 1.21541 0.90425 0.92311 0.89953 0.86914 1.22181 0.99758 0.97621 0.98496 1.21515 0.97368 0.97498 0.98457 1.21959 0.98425 0.98126 0.98974 1.22504 0.99342 0.87783 0.94262 1.48095 1.06710 1.36152 1.42422 1.17191 0.82216 0.83750 0.81884 1.91118 1.75784 1.28704 1.41287 1.22416 0.96882 1.06217 0.92991 1.23855 0.92847 0.99304 0.99184 1.74949 1.21696 1.15724 1.02976 1.78024 0.89147 1.16096 1.20330 1.46203 1.12613 1.34339 1.15405 0.67281 1.21838 0.94709 0.91848 0.90330 0.93297 0.93808 0.95306 0.94016 0.89598 0.89829 0.91587 0.88689 0.94441 0.88581 0.90686 0.94428 0.87020 0.90865 0.85552 0.80118 0.97335 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.01 13.97 21.65 0.30 -63.71 16 2 C -0.02 -1.39 5.40 84.86 0.46 -0.93 16 3 Si 0.96 50.97 24.33 68.60 1.67 52.63 16 4 H -0.28 -14.55 6.68 99.48 0.66 -13.88 16 5 H -0.32 -17.14 7.11 99.48 0.71 -16.44 16 6 H -0.26 -13.40 6.24 99.48 0.62 -12.78 16 7 C -0.23 -14.14 10.01 84.03 0.84 -13.30 16 8 H 0.03 2.36 8.06 -2.91 -0.02 2.34 16 9 N -0.62 -31.25 2.67 -699.08 -1.87 -33.11 16 10 C 0.14 5.73 6.52 86.36 0.56 6.29 16 11 C -0.12 -3.96 6.08 30.67 0.19 -3.77 16 12 C -0.10 -2.78 4.95 30.62 0.15 -2.63 16 13 C -0.11 -3.70 1.57 -10.72 -0.02 -3.71 16 14 H 0.09 3.61 5.60 -32.06 -0.18 3.43 16 15 C 0.16 3.65 2.64 44.98 0.12 3.77 16 16 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 17 C -0.14 -2.92 4.66 30.67 0.14 -2.77 16 18 C -0.11 -1.38 5.88 30.62 0.18 -1.20 16 19 C -0.14 -1.79 6.08 30.67 0.19 -1.60 16 20 C 0.08 1.08 5.70 86.36 0.49 1.58 16 21 N -0.60 -14.20 2.94 -799.11 -2.35 -16.55 16 22 C 0.57 18.82 6.54 86.61 0.57 19.38 16 23 O -0.50 -21.60 10.55 -4.07 -0.04 -21.65 16 24 C -0.05 -1.57 6.48 40.41 0.26 -1.31 16 25 C 0.01 0.26 11.98 84.18 1.01 1.27 16 26 N -0.29 -10.08 12.35 -57.50 -0.71 -10.79 16 27 N -0.05 -1.51 13.35 37.02 0.49 -1.02 16 28 N -0.35 -7.71 5.77 -48.52 -0.28 -7.99 16 29 H 0.47 5.46 6.50 -219.90 -1.43 4.03 16 30 C 0.14 5.98 2.08 86.36 0.18 6.16 16 31 H 0.26 16.39 8.31 -92.70 -0.77 15.62 16 32 H 0.04 1.89 7.93 -2.39 -0.02 1.87 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.07 1.62 6.87 -2.38 -0.02 1.61 16 38 H 0.09 1.65 6.98 -2.39 -0.02 1.63 16 39 H 0.04 1.08 5.89 -2.38 -0.01 1.06 16 40 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.07 0.94 3.78 -2.39 -0.01 0.93 16 45 H 0.13 0.56 8.14 -2.38 -0.02 0.54 16 46 H 0.18 7.63 8.06 -2.91 -0.02 7.61 16 47 H 0.01 0.40 4.40 -2.39 -0.01 0.39 16 48 H 0.06 3.10 1.96 -2.40 0.00 3.10 16 Total: -1.00 -84.60 348.28 1.82 -82.78 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -0.72 Total: 12.17 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 5.32 Total: 7.23 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -4.41 Total: -133.17 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.04 Total: -21.65 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 1.67 Total: 52.63 kcal Total: -84.60 1.82 -82.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053090537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.820 kcal (2) G-P(sol) polarization free energy of solvation -84.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds