Wall clock time and date at job start Tue Mar 31 2020 18:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00064 * 2 1 4 4 H 1.48500 * 109.46847 * 270.00057 * 3 2 1 5 5 H 1.48504 * 109.46891 * 29.99501 * 3 2 1 6 6 H 1.48498 * 109.47270 * 150.00067 * 3 2 1 7 7 C 1.38808 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00309 * 164.31332 * 7 2 1 9 9 N 1.36936 * 119.99967 * 344.31447 * 7 2 1 10 10 C 1.46926 * 120.63068 * 331.26606 * 9 7 2 11 11 C 1.53189 * 108.77642 * 233.63089 * 10 9 7 12 12 C 1.53046 * 109.31350 * 305.36453 * 11 10 9 13 13 C 1.53038 * 109.53692 * 61.36386 * 12 11 10 14 14 H 1.08999 * 109.50027 * 58.61788 * 13 12 11 15 15 C 1.52999 * 109.49416 * 178.68760 * 13 12 11 16 16 H 1.08994 * 109.58874 * 312.96984 * 15 13 12 17 17 C 1.53189 * 109.59055 * 73.26101 * 15 13 12 18 18 C 1.53038 * 109.31416 * 174.56590 * 17 15 13 19 19 C 1.53043 * 109.53576 * 298.63004 * 18 17 15 20 20 C 1.53185 * 109.34072 * 61.34920 * 19 18 17 21 21 N 1.46930 * 109.69953 * 192.61697 * 15 13 12 22 22 C 1.34770 * 120.63483 * 6.57768 * 21 15 13 23 23 O 1.21625 * 119.99720 * 351.95138 * 22 21 15 24 24 C 1.47231 * 120.00570 * 171.95518 * 22 21 15 25 25 C 1.37001 * 127.19300 * 149.77838 * 24 22 21 26 26 N 1.33319 * 106.37460 * 179.97438 * 25 24 22 27 27 N 1.28513 * 109.43700 * 0.02562 * 26 25 24 28 28 N 1.28715 * 110.64145 * 359.70962 * 27 26 25 29 29 H 0.96996 * 126.03956 * 180.30200 * 28 27 26 30 30 C 1.46929 * 120.63193 * 151.28689 * 9 7 2 31 31 H 0.97002 * 120.00132 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.59072 * 113.84393 * 10 9 7 33 33 H 1.09005 * 109.70469 * 353.48510 * 10 9 7 34 34 H 1.09003 * 109.49885 * 185.41320 * 11 10 9 35 35 H 1.08998 * 109.50157 * 65.31196 * 11 10 9 36 36 H 1.09007 * 109.45772 * 301.34608 * 12 11 10 37 37 H 1.08995 * 109.46164 * 181.38655 * 12 11 10 38 38 H 1.08997 * 109.49955 * 54.60630 * 17 15 13 39 39 H 1.09004 * 109.49306 * 294.51199 * 17 15 13 40 40 H 1.09006 * 109.45929 * 178.61525 * 18 17 15 41 41 H 1.08993 * 109.46342 * 58.65284 * 18 17 15 42 42 H 1.09005 * 109.49705 * 181.32114 * 19 18 17 43 43 H 1.09005 * 109.49315 * 301.38170 * 19 18 17 44 44 H 1.09002 * 109.58527 * 65.16969 * 20 19 18 45 45 H 1.08997 * 109.59196 * 185.59456 * 20 19 18 46 46 H 1.07998 * 126.81214 * 0.02562 * 25 24 22 47 47 H 1.08991 * 109.58861 * 6.58308 * 30 9 7 48 48 H 1.08997 * 109.58721 * 246.15557 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0601 -1.2196 -0.2523 9 7 1.3638 -2.3658 0.3217 10 6 0.2106 -2.3549 1.2319 11 6 0.4684 -3.3515 2.3664 12 6 0.7862 -4.7251 1.7710 13 6 2.0505 -4.6313 0.9139 14 1 2.8802 -4.2786 1.5266 15 6 2.3858 -6.0117 0.3457 16 1 2.3277 -6.7572 1.1387 17 6 1.3920 -6.3651 -0.7653 18 6 1.8126 -7.6827 -1.4203 19 6 3.2000 -7.5231 -2.0462 20 6 4.2148 -7.1824 -0.9505 21 7 3.7419 -5.9986 -0.2196 22 6 4.5378 -4.9213 -0.0703 23 8 4.0900 -3.8958 0.4062 24 6 5.9493 -4.9856 -0.4841 25 6 6.7248 -3.9548 -0.9457 26 7 7.9276 -4.4724 -1.1961 27 7 7.9196 -5.7271 -0.9182 28 7 6.7635 -6.0880 -0.4826 29 1 6.5122 -6.9826 -0.2044 30 6 1.8106 -3.6491 -0.2371 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6877 -2.6457 0.6873 33 1 0.0790 -1.3554 1.6465 34 1 -0.4188 -3.4241 2.9955 35 1 1.3128 -3.0105 2.9654 36 1 -0.0485 -5.0545 1.1521 37 1 0.9459 -5.4419 2.5764 38 1 1.3858 -5.5725 -1.5135 39 1 0.3941 -6.4725 -0.3400 40 1 1.0933 -7.9490 -2.1949 41 1 1.8425 -8.4696 -0.6668 42 1 3.4890 -8.4547 -2.5329 43 1 3.1766 -6.7199 -2.7829 44 1 4.3063 -8.0233 -0.2630 45 1 5.1836 -6.9704 -1.4026 46 1 6.4220 -2.9268 -1.0794 47 1 2.7373 -3.5032 -0.7921 48 1 1.0429 -4.0454 -0.9016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053090539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:43 Heat of formation + Delta-G solvation = 121.797150 kcal Electronic energy + Delta-G solvation = -31165.146319 eV Core-core repulsion = 27259.411429 eV Total energy + Delta-G solvation = -3905.734889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.51401 -40.83642 -37.59016 -37.09917 -34.17695 -33.40331 -32.83001 -31.82743 -31.04214 -30.22850 -28.49437 -25.79194 -25.14114 -24.21527 -23.75373 -22.97126 -22.02389 -21.43955 -20.95558 -19.96073 -18.87174 -17.92753 -16.94146 -16.52605 -16.42030 -15.99213 -15.23789 -14.87671 -14.67941 -14.47019 -14.38318 -14.17381 -13.85651 -13.69048 -13.39944 -13.24310 -12.81733 -12.46620 -12.38806 -12.20027 -12.10187 -11.73095 -11.38867 -11.34544 -11.21000 -11.01794 -10.82292 -10.72553 -10.69292 -10.49997 -10.42613 -10.17434 -9.98448 -9.78027 -9.51171 -9.40021 -9.18573 -8.99222 -8.43900 -8.28077 -6.42851 -5.61319 -3.01440 0.86393 2.15764 2.29014 2.63968 3.05259 3.47599 3.54251 3.58546 4.05590 4.33453 4.45389 4.58746 4.64590 4.72985 4.87616 4.90377 5.03163 5.05759 5.09160 5.22429 5.39296 5.49389 5.54347 5.64527 5.68292 5.73666 5.79013 5.90066 5.90546 5.94498 5.97204 6.16393 6.27448 6.32183 6.41651 6.45194 6.55937 6.64381 6.80749 6.83566 7.00356 7.09813 7.19788 7.32217 7.56083 7.82332 7.99168 8.09480 8.16331 8.65598 9.41348 10.06104 10.62939 11.47533 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.005030 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.363743 B = 5564.713967 C = 7405.076409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.005 4.005 3 Si 0.897 3.103 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.065 0.935 9 N -0.584 5.584 10 C 0.170 3.830 11 C -0.140 4.140 12 C -0.106 4.106 13 C -0.115 4.115 14 H 0.111 0.889 15 C 0.160 3.840 16 H 0.069 0.931 17 C -0.140 4.140 18 C -0.119 4.119 19 C -0.133 4.133 20 C 0.096 3.904 21 N -0.605 5.605 22 C 0.568 3.432 23 O -0.446 6.446 24 C -0.052 4.052 25 C 0.025 3.975 26 N -0.268 5.268 27 N -0.062 5.062 28 N -0.382 5.382 29 H 0.449 0.551 30 C 0.167 3.833 31 H 0.250 0.750 32 H 0.013 0.987 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.205 0.795 47 H 0.064 0.936 48 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.452 -19.974 -0.659 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.202 4.202 3 Si 0.727 3.273 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.083 0.917 9 N -0.306 5.306 10 C 0.044 3.956 11 C -0.179 4.179 12 C -0.144 4.144 13 C -0.135 4.135 14 H 0.129 0.871 15 C 0.057 3.943 16 H 0.086 0.914 17 C -0.179 4.179 18 C -0.156 4.156 19 C -0.171 4.171 20 C -0.028 4.028 21 N -0.340 5.340 22 C 0.352 3.648 23 O -0.316 6.316 24 C -0.186 4.186 25 C -0.133 4.133 26 N -0.134 5.134 27 N -0.043 5.043 28 N -0.111 5.111 29 H 0.297 0.703 30 C 0.041 3.959 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.222 0.778 47 H 0.082 0.918 48 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 7.551 -19.535 -0.757 20.957 hybrid contribution -0.870 0.432 0.375 1.041 sum 6.681 -19.103 -0.381 20.241 Atomic orbital electron populations 1.70024 1.05160 1.25001 1.55409 1.25010 0.95240 0.98142 1.01810 0.86368 0.79250 0.84092 0.77559 1.21648 1.21830 1.20542 1.19201 0.92100 0.84528 1.40229 0.91746 1.43920 1.34357 1.01838 1.50478 1.20743 0.88587 0.97876 0.88351 1.22151 0.99640 0.96266 0.99864 1.21538 0.97461 0.97478 0.97946 1.22526 0.98632 0.91971 1.00338 0.87119 1.21469 0.78890 0.99652 0.94246 0.91354 1.22182 0.99054 0.97508 0.99108 1.21534 0.96105 0.97967 1.00042 1.21875 0.95422 1.02207 0.97582 1.21938 0.98089 0.88166 0.94594 1.47956 1.15743 1.14998 1.55307 1.17004 0.82460 0.84351 0.81022 1.91132 1.71412 1.28956 1.40075 1.22726 0.95717 0.88324 1.11877 1.23970 0.88558 1.01019 0.99770 1.74965 1.20515 0.99929 1.17979 1.78165 1.03315 1.09495 1.13372 1.45980 1.08864 1.12097 1.44167 0.70293 1.21186 0.96718 0.86136 0.91902 0.94017 0.96928 0.89759 0.93729 0.92894 0.93140 0.94277 0.89831 0.90450 0.91573 0.92072 0.90790 0.90984 0.91022 0.90778 0.77848 0.91810 0.97690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.16 11.16 55.49 0.62 -26.54 16 2 C 0.00 -0.14 4.95 -17.43 -0.09 -0.23 16 3 Si 0.90 22.57 29.58 -169.99 -5.03 17.55 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.23 -6.54 9.58 -15.06 -0.14 -6.68 16 8 H 0.06 1.84 7.88 -52.49 -0.41 1.43 16 9 N -0.58 -14.99 2.99 -172.32 -0.52 -15.50 16 10 C 0.17 4.19 5.29 -3.71 -0.02 4.17 16 11 C -0.14 -2.77 6.08 -26.61 -0.16 -2.93 16 12 C -0.11 -1.77 4.99 -26.69 -0.13 -1.90 16 13 C -0.11 -1.96 1.57 -90.50 -0.14 -2.10 16 14 H 0.11 2.17 5.48 -54.21 -0.30 1.88 16 15 C 0.16 1.99 2.64 -67.60 -0.18 1.81 16 16 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 17 C -0.14 -1.62 4.59 -26.61 -0.12 -1.74 16 18 C -0.12 -0.98 5.88 -26.69 -0.16 -1.14 16 19 C -0.13 -1.00 6.08 -26.61 -0.16 -1.16 16 20 C 0.10 0.70 5.40 -3.71 -0.02 0.68 16 21 N -0.60 -6.78 2.96 -166.55 -0.49 -7.27 16 22 C 0.57 7.88 6.96 -12.61 -0.09 7.79 16 23 O -0.45 -8.21 10.34 5.26 0.05 -8.15 16 24 C -0.05 -0.63 6.23 -82.33 -0.51 -1.15 16 25 C 0.03 0.34 11.98 -17.35 -0.21 0.13 16 26 N -0.27 -3.75 12.35 30.47 0.38 -3.37 16 27 N -0.06 -0.75 13.35 60.35 0.81 0.06 16 28 N -0.38 -3.64 5.69 33.31 0.19 -3.45 16 29 H 0.45 2.59 7.22 -190.33 -1.37 1.22 16 30 C 0.17 3.51 4.34 -3.71 -0.02 3.50 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 2.34 6.07 -51.93 -0.32 2.02 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.82 7.08 -51.92 -0.37 0.45 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.17 5.87 -51.93 -0.30 0.87 16 39 H 0.08 0.89 7.16 -51.93 -0.37 0.52 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.50 4.77 -51.93 -0.25 0.25 16 46 H 0.20 2.59 8.06 -52.49 -0.42 2.16 16 47 H 0.06 1.41 5.30 -51.93 -0.28 1.14 16 48 H 0.01 0.12 5.88 -51.93 -0.31 -0.19 16 LS Contribution 356.75 15.07 5.38 5.38 Total: -1.00 -33.47 356.75 -8.82 -42.29 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -8.06 Total: -0.04 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.15 Total: -0.94 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.98 Total: -56.08 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.05 Total: -8.15 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.47 -8.82 -42.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053090539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.092 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds