Wall clock time and date at job start Tue Mar 31 2020 18:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00064 * 2 1 4 4 H 1.48500 * 109.46847 * 270.00057 * 3 2 1 5 5 H 1.48504 * 109.46891 * 29.99501 * 3 2 1 6 6 H 1.48498 * 109.47270 * 150.00067 * 3 2 1 7 7 C 1.38808 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00309 * 164.31332 * 7 2 1 9 9 N 1.36936 * 119.99967 * 344.31447 * 7 2 1 10 10 C 1.46926 * 120.63068 * 331.26606 * 9 7 2 11 11 C 1.53189 * 108.77642 * 233.63089 * 10 9 7 12 12 C 1.53046 * 109.31350 * 305.36453 * 11 10 9 13 13 C 1.53038 * 109.53692 * 61.36386 * 12 11 10 14 14 H 1.08999 * 109.50027 * 58.61788 * 13 12 11 15 15 C 1.52999 * 109.49416 * 178.68760 * 13 12 11 16 16 H 1.08994 * 109.58874 * 312.96984 * 15 13 12 17 17 C 1.53189 * 109.59055 * 73.26101 * 15 13 12 18 18 C 1.53038 * 109.31416 * 174.56590 * 17 15 13 19 19 C 1.53043 * 109.53576 * 298.63004 * 18 17 15 20 20 C 1.53185 * 109.34072 * 61.34920 * 19 18 17 21 21 N 1.46930 * 109.69953 * 192.61697 * 15 13 12 22 22 C 1.34770 * 120.63483 * 6.57768 * 21 15 13 23 23 O 1.21625 * 119.99720 * 351.95138 * 22 21 15 24 24 C 1.47231 * 120.00570 * 171.95518 * 22 21 15 25 25 C 1.37001 * 127.19300 * 149.77838 * 24 22 21 26 26 N 1.33319 * 106.37460 * 179.97438 * 25 24 22 27 27 N 1.28513 * 109.43700 * 0.02562 * 26 25 24 28 28 N 1.28715 * 110.64145 * 359.70962 * 27 26 25 29 29 H 0.96996 * 126.03956 * 180.30200 * 28 27 26 30 30 C 1.46929 * 120.63193 * 151.28689 * 9 7 2 31 31 H 0.97002 * 120.00132 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.59072 * 113.84393 * 10 9 7 33 33 H 1.09005 * 109.70469 * 353.48510 * 10 9 7 34 34 H 1.09003 * 109.49885 * 185.41320 * 11 10 9 35 35 H 1.08998 * 109.50157 * 65.31196 * 11 10 9 36 36 H 1.09007 * 109.45772 * 301.34608 * 12 11 10 37 37 H 1.08995 * 109.46164 * 181.38655 * 12 11 10 38 38 H 1.08997 * 109.49955 * 54.60630 * 17 15 13 39 39 H 1.09004 * 109.49306 * 294.51199 * 17 15 13 40 40 H 1.09006 * 109.45929 * 178.61525 * 18 17 15 41 41 H 1.08993 * 109.46342 * 58.65284 * 18 17 15 42 42 H 1.09005 * 109.49705 * 181.32114 * 19 18 17 43 43 H 1.09005 * 109.49315 * 301.38170 * 19 18 17 44 44 H 1.09002 * 109.58527 * 65.16969 * 20 19 18 45 45 H 1.08997 * 109.59196 * 185.59456 * 20 19 18 46 46 H 1.07998 * 126.81214 * 0.02562 * 25 24 22 47 47 H 1.08991 * 109.58861 * 6.58308 * 30 9 7 48 48 H 1.08997 * 109.58721 * 246.15557 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0601 -1.2196 -0.2523 9 7 1.3638 -2.3658 0.3217 10 6 0.2106 -2.3549 1.2319 11 6 0.4684 -3.3515 2.3664 12 6 0.7862 -4.7251 1.7710 13 6 2.0505 -4.6313 0.9139 14 1 2.8802 -4.2786 1.5266 15 6 2.3858 -6.0117 0.3457 16 1 2.3277 -6.7572 1.1387 17 6 1.3920 -6.3651 -0.7653 18 6 1.8126 -7.6827 -1.4203 19 6 3.2000 -7.5231 -2.0462 20 6 4.2148 -7.1824 -0.9505 21 7 3.7419 -5.9986 -0.2196 22 6 4.5378 -4.9213 -0.0703 23 8 4.0900 -3.8958 0.4062 24 6 5.9493 -4.9856 -0.4841 25 6 6.7248 -3.9548 -0.9457 26 7 7.9276 -4.4724 -1.1961 27 7 7.9196 -5.7271 -0.9182 28 7 6.7635 -6.0880 -0.4826 29 1 6.5122 -6.9826 -0.2044 30 6 1.8106 -3.6491 -0.2371 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6877 -2.6457 0.6873 33 1 0.0790 -1.3554 1.6465 34 1 -0.4188 -3.4241 2.9955 35 1 1.3128 -3.0105 2.9654 36 1 -0.0485 -5.0545 1.1521 37 1 0.9459 -5.4419 2.5764 38 1 1.3858 -5.5725 -1.5135 39 1 0.3941 -6.4725 -0.3400 40 1 1.0933 -7.9490 -2.1949 41 1 1.8425 -8.4696 -0.6668 42 1 3.4890 -8.4547 -2.5329 43 1 3.1766 -6.7199 -2.7829 44 1 4.3063 -8.0233 -0.2630 45 1 5.1836 -6.9704 -1.4026 46 1 6.4220 -2.9268 -1.0794 47 1 2.7373 -3.5032 -0.7921 48 1 1.0429 -4.0454 -0.9016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053090539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:42 Heat of formation + Delta-G solvation = 98.681511 kcal Electronic energy + Delta-G solvation = -31166.148688 eV Core-core repulsion = 27259.411429 eV Total energy + Delta-G solvation = -3906.737258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.49017 -41.92353 -38.87840 -38.36874 -35.49482 -34.77918 -33.74710 -33.20967 -32.21603 -32.04161 -29.73119 -27.18441 -26.82951 -25.07928 -24.79789 -24.09632 -23.75729 -22.61098 -22.02590 -21.03018 -20.32795 -18.89826 -18.61503 -17.79575 -17.45183 -17.06489 -16.79281 -16.27920 -15.76364 -15.70934 -15.51852 -15.33978 -15.15757 -14.98610 -14.70295 -14.33135 -14.23112 -13.94899 -13.86558 -13.42665 -13.26621 -13.04753 -12.87685 -12.69109 -12.38126 -12.34953 -12.15277 -12.06987 -11.98092 -11.87345 -11.70012 -11.61910 -11.54796 -11.34738 -11.07208 -10.92640 -10.49776 -10.46818 -10.18747 -9.48575 -8.50956 -7.79798 -5.22587 -0.11924 1.15101 1.37109 1.43617 1.44902 1.55699 1.66785 2.09362 2.54672 3.14280 3.33084 3.46431 3.68993 3.77243 3.91184 3.96031 3.97183 4.06229 4.08228 4.18660 4.24732 4.32534 4.35794 4.47542 4.58021 4.64226 4.79572 4.82963 4.87847 4.92010 5.00627 5.02515 5.06541 5.10081 5.19997 5.24871 5.28066 5.40946 5.47607 5.49038 5.54734 5.60189 5.66582 5.70850 5.78584 5.96140 6.26667 6.49295 7.03919 7.15624 7.24507 8.00572 8.50035 9.25893 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.005030 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.363743 B = 5564.713967 C = 7405.076409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.057 4.057 3 Si 0.958 3.042 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.237 4.237 8 H 0.054 0.946 9 N -0.604 5.604 10 C 0.176 3.824 11 C -0.131 4.131 12 C -0.101 4.101 13 C -0.104 4.104 14 H 0.090 0.910 15 C 0.165 3.835 16 H 0.104 0.896 17 C -0.139 4.139 18 C -0.112 4.112 19 C -0.132 4.132 20 C 0.089 3.911 21 N -0.597 5.597 22 C 0.569 3.431 23 O -0.502 6.502 24 C -0.048 4.048 25 C 0.011 3.989 26 N -0.292 5.292 27 N -0.059 5.059 28 N -0.350 5.350 29 H 0.468 0.532 30 C 0.173 3.827 31 H 0.246 0.754 32 H -0.008 1.008 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.046 0.954 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.199 0.801 47 H 0.048 0.952 48 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.336 -23.951 -0.097 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.251 4.251 3 Si 0.787 3.213 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.368 4.368 8 H 0.072 0.928 9 N -0.326 5.326 10 C 0.050 3.950 11 C -0.170 4.170 12 C -0.139 4.139 13 C -0.123 4.123 14 H 0.108 0.892 15 C 0.063 3.937 16 H 0.121 0.879 17 C -0.177 4.177 18 C -0.149 4.149 19 C -0.170 4.170 20 C -0.032 4.032 21 N -0.330 5.330 22 C 0.354 3.646 23 O -0.375 6.375 24 C -0.183 4.183 25 C -0.148 4.148 26 N -0.157 5.157 27 N -0.041 5.041 28 N -0.083 5.083 29 H 0.321 0.679 30 C 0.048 3.952 31 H 0.055 0.945 32 H 0.010 0.990 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.123 0.877 43 H 0.065 0.935 44 H 0.133 0.867 45 H 0.098 0.902 46 H 0.216 0.784 47 H 0.066 0.934 48 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 8.454 -23.612 -0.211 25.081 hybrid contribution -1.144 1.587 0.144 1.962 sum 7.310 -22.025 -0.067 23.207 Atomic orbital electron populations 1.70174 1.06388 1.25295 1.56836 1.25694 0.96032 1.01032 1.02329 0.85401 0.78052 0.80281 0.77547 1.21153 1.21738 1.20144 1.19384 0.91889 0.86082 1.39483 0.92815 1.44193 1.34389 1.02756 1.51262 1.20556 0.87700 0.97290 0.89436 1.21989 1.00119 0.96842 0.98034 1.21515 0.97385 0.96051 0.98970 1.22209 0.98168 0.93577 0.98389 0.89226 1.21390 0.79635 0.97239 0.95430 0.87862 1.22124 0.99057 0.98483 0.98031 1.21506 0.96453 0.96341 1.00642 1.21892 0.95121 1.02845 0.97107 1.22319 0.98129 0.87560 0.95225 1.48037 1.14945 1.15454 1.54610 1.17175 0.83021 0.84198 0.80181 1.91124 1.72463 1.31039 1.42910 1.22361 0.95140 0.88824 1.11947 1.24029 0.88909 1.01461 1.00435 1.74962 1.20881 1.00701 1.19204 1.78090 1.03887 1.08933 1.13227 1.45881 1.07560 1.12364 1.42472 0.67933 1.21251 0.95351 0.85232 0.93351 0.94462 0.99024 0.93613 0.91506 0.94167 0.92494 0.90438 0.93392 0.90294 0.91134 0.89411 0.87657 0.93512 0.86725 0.90230 0.78369 0.93388 0.98446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.62 11.16 21.65 0.24 -58.38 16 2 C -0.06 -3.39 4.95 84.86 0.42 -2.97 16 3 Si 0.96 48.23 29.58 68.60 2.03 50.26 16 4 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 6 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.24 -14.15 9.58 84.03 0.81 -13.34 16 8 H 0.05 3.25 7.88 -2.91 -0.02 3.23 16 9 N -0.60 -32.47 2.99 -699.10 -2.09 -34.56 16 10 C 0.18 9.05 5.29 86.36 0.46 9.51 16 11 C -0.13 -5.16 6.08 30.67 0.19 -4.98 16 12 C -0.10 -3.18 4.99 30.62 0.15 -3.03 16 13 C -0.10 -3.46 1.57 -10.72 -0.02 -3.48 16 14 H 0.09 3.52 5.48 -38.56 -0.21 3.31 16 15 C 0.17 3.66 2.64 44.97 0.12 3.78 16 16 H 0.10 1.71 8.08 -2.39 -0.02 1.69 16 17 C -0.14 -2.88 4.59 30.67 0.14 -2.74 16 18 C -0.11 -1.40 5.88 30.62 0.18 -1.22 16 19 C -0.13 -1.46 6.08 30.67 0.19 -1.27 16 20 C 0.09 0.92 5.40 86.36 0.47 1.39 16 21 N -0.60 -11.88 2.96 -799.09 -2.37 -14.25 16 22 C 0.57 15.45 6.96 86.61 0.60 16.05 16 23 O -0.50 -19.03 10.34 -4.11 -0.04 -19.07 16 24 C -0.05 -1.12 6.23 40.40 0.25 -0.86 16 25 C 0.01 0.29 11.98 84.18 1.01 1.30 16 26 N -0.29 -8.04 12.35 -57.51 -0.71 -8.75 16 27 N -0.06 -1.34 13.35 37.02 0.49 -0.84 16 28 N -0.35 -5.78 5.69 -48.52 -0.28 -6.06 16 29 H 0.47 3.51 7.22 -219.90 -1.59 1.92 16 30 C 0.17 7.57 4.34 86.36 0.38 7.94 16 31 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 32 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.05 2.68 6.07 -2.38 -0.01 2.66 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.74 7.08 -2.38 -0.02 1.72 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.34 5.87 -2.39 -0.01 1.33 16 39 H 0.08 1.62 7.16 -2.38 -0.02 1.60 16 40 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.08 0.75 4.77 -2.39 -0.01 0.74 16 46 H 0.20 5.42 8.06 -2.91 -0.02 5.40 16 47 H 0.05 2.25 5.30 -2.39 -0.01 2.24 16 48 H 0.00 -0.09 5.88 -2.39 -0.01 -0.10 16 Total: -1.00 -78.96 356.75 1.82 -77.13 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -0.79 Total: 8.45 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 5.33 Total: 6.07 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -4.71 Total: -122.83 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.04 Total: -19.07 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -78.96 1.82 -77.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053090539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.816 kcal (2) G-P(sol) polarization free energy of solvation -78.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds