Wall clock time and date at job start Tue Mar 31 2020 18:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48503 * 109.46800 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46943 * 299.99241 * 3 2 1 6 6 H 1.48490 * 109.47317 * 59.99336 * 3 2 1 7 7 C 1.38816 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00115 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99534 * 0.02562 * 7 2 1 10 10 C 1.47082 * 125.62865 * 0.02562 * 9 7 2 11 11 C 1.54468 * 107.42506 * 178.88632 * 10 9 7 12 12 C 1.54577 * 102.75359 * 338.70095 * 11 10 9 13 13 C 1.47582 * 125.62100 * 179.97438 * 9 7 2 14 14 C 1.52073 * 110.52308 * 276.32255 * 12 11 10 15 15 C 1.53189 * 109.67596 * 177.48528 * 14 12 11 16 16 C 1.53180 * 109.28013 * 59.95692 * 15 14 12 17 17 N 1.46935 * 108.93893 * 304.68842 * 16 15 14 18 18 C 1.34770 * 120.71401 * 234.23427 * 17 16 15 19 19 O 1.21289 * 120.00028 * 179.97438 * 18 17 16 20 20 C 1.50701 * 120.00221 * 359.97438 * 18 17 16 21 21 C 1.53001 * 109.47096 * 180.02562 * 20 18 17 22 22 C 1.50700 * 109.46806 * 180.02562 * 21 20 18 23 23 C 1.35352 * 126.91909 * 84.99671 * 22 21 20 24 24 N 1.33768 * 106.50028 * 179.97438 * 23 22 21 25 25 N 1.28638 * 108.88586 * 359.97438 * 24 23 22 26 26 N 1.28722 * 110.17531 * 359.75864 * 25 24 23 27 27 H 0.97001 * 125.86335 * 180.23845 * 26 25 24 28 28 C 1.47110 * 118.57516 * 54.24679 * 17 16 15 29 29 H 0.97001 * 119.99940 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.87739 * 298.38776 * 10 9 7 31 31 H 1.08996 * 109.87620 * 59.38700 * 10 9 7 32 32 H 1.09003 * 110.73728 * 96.95382 * 11 10 9 33 33 H 1.08996 * 110.73633 * 220.26516 * 11 10 9 34 34 H 1.08999 * 110.37886 * 322.15569 * 13 9 7 35 35 H 1.09002 * 110.37372 * 84.40100 * 13 9 7 36 36 H 1.09006 * 109.43765 * 297.54480 * 14 12 11 37 37 H 1.09002 * 109.43673 * 57.45916 * 14 12 11 38 38 H 1.09000 * 109.50313 * 179.90163 * 15 14 12 39 39 H 1.09006 * 109.50376 * 300.01618 * 15 14 12 40 40 H 1.09000 * 109.55860 * 64.52298 * 16 15 14 41 41 H 1.09001 * 109.56413 * 184.73901 * 16 15 14 42 42 H 1.09001 * 109.47152 * 300.00436 * 20 18 17 43 43 H 1.09002 * 109.46589 * 60.00562 * 20 18 17 44 44 H 1.09001 * 109.47007 * 299.99951 * 21 20 18 45 45 H 1.08989 * 109.47228 * 60.00228 * 21 20 18 46 46 H 1.08000 * 126.74848 * 359.94328 * 23 22 21 47 47 H 1.08996 * 109.57761 * 187.94591 * 28 17 16 48 48 H 1.09003 * 109.57112 * 67.55681 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1382 -2.5322 -0.0005 11 6 -0.4541 -4.0440 -0.0287 12 6 0.8504 -4.6548 -0.5895 13 6 1.9346 -3.7323 0.0005 14 6 0.8584 -4.5921 -2.1089 15 6 2.1846 -5.1442 -2.6410 16 6 2.3448 -6.5988 -2.1884 17 7 2.2264 -6.6588 -0.7251 18 6 3.1926 -7.2301 0.0209 19 8 3.0817 -7.2721 1.2280 20 6 4.4107 -7.8168 -0.6448 21 6 5.3435 -8.3978 0.4198 22 6 6.5619 -8.9839 -0.2459 23 6 7.6863 -8.3240 -0.6095 24 7 8.4986 -9.2326 -1.1608 25 7 7.9161 -10.3794 -1.1395 26 7 6.7544 -10.2771 -0.5944 27 1 6.1243 -11.0021 -0.4593 28 6 1.0304 -6.0820 -0.0917 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5555 -2.0831 0.9008 31 1 -0.5575 -2.0495 -0.8832 32 1 -0.6527 -4.4156 0.9766 33 1 -1.2952 -4.2502 -0.6906 34 1 2.8262 -3.7450 -0.6263 35 1 2.1820 -4.0368 1.0175 36 1 0.0341 -5.1879 -2.5009 37 1 0.7423 -3.5568 -2.4298 38 1 2.1866 -5.0995 -3.7300 39 1 3.0097 -4.5486 -2.2502 40 1 1.5653 -7.2103 -2.6429 41 1 3.3235 -6.9700 -2.4925 42 1 4.1049 -8.6074 -1.3301 43 1 4.9327 -7.0369 -1.1993 44 1 5.6493 -7.6075 1.1053 45 1 4.8213 -9.1776 0.9739 46 1 7.8878 -7.2708 -0.4804 47 1 1.1565 -6.0780 0.9910 48 1 0.1549 -6.6746 -0.3572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054199824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:54 Heat of formation + Delta-G solvation = 78.451097 kcal Electronic energy + Delta-G solvation = -29337.434529 eV Core-core repulsion = 25429.820014 eV Total energy + Delta-G solvation = -3907.614515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.62412 -40.52222 -38.59204 -35.92576 -34.80037 -33.49940 -33.04109 -31.92442 -30.69933 -29.91145 -28.51777 -26.20425 -25.66195 -24.67771 -23.47356 -23.24732 -22.16466 -21.88323 -20.20853 -19.25396 -18.62996 -18.07851 -17.26722 -16.76050 -16.46425 -15.90771 -15.76741 -15.04449 -14.71514 -14.67557 -14.50562 -14.06999 -13.92156 -13.61535 -13.38475 -13.22884 -13.07190 -12.71445 -12.49210 -12.11745 -11.98530 -11.88457 -11.70834 -11.64409 -11.15337 -11.14466 -10.93044 -10.90767 -10.88242 -10.78639 -10.67460 -10.16202 -10.10807 -9.94554 -9.81071 -9.66202 -9.64490 -9.44460 -8.58854 -8.54057 -6.80119 -5.70405 -3.02887 1.18971 2.23141 2.37506 2.54872 2.94327 3.39542 3.45529 3.47625 4.00208 4.29307 4.47636 4.49998 4.56300 4.65998 4.76512 4.88015 4.99994 5.05649 5.07153 5.12592 5.15433 5.27883 5.37881 5.51795 5.53156 5.57774 5.60563 5.73036 5.82671 5.85196 5.86203 5.90736 5.97075 6.08166 6.27462 6.34014 6.43304 6.46792 6.51263 6.61560 6.69987 6.79826 6.94371 7.37470 7.57528 7.63523 7.83635 8.10443 8.11519 8.27176 9.23724 9.84176 10.50816 11.41392 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.002762 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.394397 B =10135.672262 C =11143.712481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.134 4.134 12 C -0.086 4.086 13 C 0.152 3.848 14 C -0.096 4.096 15 C -0.137 4.137 16 C 0.107 3.893 17 N -0.605 5.605 18 C 0.515 3.485 19 O -0.542 6.542 20 C -0.136 4.136 21 C -0.034 4.034 22 C -0.006 4.006 23 C -0.044 4.044 24 N -0.266 5.266 25 N -0.085 5.085 26 N -0.391 5.391 27 H 0.447 0.553 28 C 0.129 3.871 29 H 0.251 0.749 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.016 0.984 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.193 0.807 47 H 0.092 0.908 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 -20.076 -4.636 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.055 3.945 11 C -0.173 4.173 12 C -0.088 4.088 13 C 0.026 3.974 14 C -0.134 4.134 15 C -0.175 4.175 16 C -0.016 4.016 17 N -0.338 5.338 18 C 0.303 3.697 19 O -0.420 6.420 20 C -0.177 4.177 21 C -0.073 4.073 22 C -0.139 4.139 23 C -0.202 4.202 24 N -0.133 5.133 25 N -0.065 5.065 26 N -0.111 5.111 27 H 0.292 0.708 28 C 0.007 3.993 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.105 0.895 46 H 0.210 0.790 47 H 0.111 0.889 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.914 -20.725 -4.680 22.055 hybrid contribution -0.848 1.270 0.459 1.594 sum 5.066 -19.455 -4.221 20.543 Atomic orbital electron populations 1.69972 1.04836 1.24790 1.57443 1.24776 0.95694 0.97569 1.02486 0.86078 0.78749 0.83951 0.77213 1.20546 1.21829 1.21810 1.19080 0.90371 0.82469 1.43289 0.90601 1.44516 1.01580 0.99837 1.87103 1.21131 0.84399 0.88007 1.00933 1.22869 0.95221 0.99716 0.99516 1.21440 0.98308 0.93387 0.95674 1.21453 0.93796 0.85708 0.96448 1.21227 0.95757 1.02339 0.94051 1.21988 0.99966 0.95008 1.00530 1.21774 1.01990 0.98081 0.79705 1.48150 1.20936 1.57502 1.07178 1.20409 0.83784 0.78223 0.87283 1.90719 1.78747 1.58446 1.14049 1.21687 0.94733 1.02108 0.99143 1.19900 0.89472 1.01546 0.96425 1.22359 1.00746 0.84867 1.05968 1.23512 0.91178 1.01703 1.03758 1.75122 1.25525 0.95608 1.17007 1.78305 0.93058 1.19268 1.15911 1.45155 1.15285 1.09655 1.41054 0.70762 1.21531 0.85649 0.92925 0.99182 0.93892 0.94157 0.93640 0.92357 0.92013 0.94497 0.96672 0.92706 0.90220 0.90995 0.90714 0.91451 0.90187 0.89083 0.87979 0.87545 0.89484 0.79025 0.88936 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 10.30 55.49 0.57 -26.29 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.22 -6.17 10.28 -15.06 -0.15 -6.32 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.05 3.39 -170.32 -0.58 -15.63 16 10 C 0.18 4.25 5.02 -2.95 -0.01 4.24 16 11 C -0.13 -2.38 5.91 -25.13 -0.15 -2.52 16 12 C -0.09 -1.38 0.55 -153.98 -0.08 -1.46 16 13 C 0.15 3.07 5.96 -2.88 -0.02 3.06 16 14 C -0.10 -1.37 4.64 -27.11 -0.13 -1.50 16 15 C -0.14 -1.56 5.91 -26.54 -0.16 -1.71 16 16 C 0.11 0.96 6.32 -3.71 -0.02 0.94 16 17 N -0.61 -6.99 2.87 -173.20 -0.50 -7.48 16 18 C 0.52 5.96 7.70 -10.99 -0.08 5.88 16 19 O -0.54 -8.28 15.41 5.55 0.09 -8.19 16 20 C -0.14 -0.98 4.03 -27.88 -0.11 -1.10 16 21 C -0.03 -0.23 5.07 -27.88 -0.14 -0.37 16 22 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 23 C -0.04 -0.40 11.99 -17.74 -0.21 -0.61 16 24 N -0.27 -3.11 12.41 30.23 0.38 -2.74 16 25 N -0.09 -0.90 13.38 60.35 0.81 -0.09 16 26 N -0.39 -2.74 6.98 33.54 0.23 -2.51 16 27 H 0.45 1.49 8.96 -190.39 -1.71 -0.21 16 28 C 0.13 1.76 5.12 -4.10 -0.02 1.74 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 31 H 0.05 1.18 7.37 -51.93 -0.38 0.80 16 32 H 0.06 0.99 8.01 -51.93 -0.42 0.57 16 33 H 0.06 0.97 8.01 -51.93 -0.42 0.55 16 34 H 0.04 0.74 6.10 -51.93 -0.32 0.42 16 35 H 0.02 0.34 7.87 -51.93 -0.41 -0.07 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.41 7.85 -51.93 -0.41 1.00 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.00 6.33 -51.93 -0.33 0.67 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.53 5.95 -51.93 -0.31 0.22 16 42 H 0.09 0.48 7.93 -51.93 -0.41 0.07 16 43 H 0.10 0.67 7.71 -51.93 -0.40 0.27 16 44 H 0.11 0.83 8.10 -51.93 -0.42 0.41 16 45 H 0.09 0.57 8.10 -51.94 -0.42 0.15 16 46 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 47 H 0.09 1.45 6.84 -51.93 -0.36 1.10 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -34.64 375.58 -9.05 -43.69 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -8.75 Total: -2.75 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.93 Total: -0.69 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.91 Total: -54.74 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.64 -9.05 -43.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054199824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.138 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds