Wall clock time and date at job start Tue Mar 31 2020 18:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48503 * 109.46800 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46943 * 299.99241 * 3 2 1 6 6 H 1.48490 * 109.47317 * 59.99336 * 3 2 1 7 7 C 1.38816 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00115 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99534 * 0.02562 * 7 2 1 10 10 C 1.47082 * 125.62865 * 0.02562 * 9 7 2 11 11 C 1.54468 * 107.42506 * 178.88632 * 10 9 7 12 12 C 1.54577 * 102.75359 * 338.70095 * 11 10 9 13 13 C 1.47582 * 125.62100 * 179.97438 * 9 7 2 14 14 C 1.52073 * 110.52308 * 276.32255 * 12 11 10 15 15 C 1.53189 * 109.67596 * 177.48528 * 14 12 11 16 16 C 1.53180 * 109.28013 * 59.95692 * 15 14 12 17 17 N 1.46935 * 108.93893 * 304.68842 * 16 15 14 18 18 C 1.34770 * 120.71401 * 234.23427 * 17 16 15 19 19 O 1.21289 * 120.00028 * 179.97438 * 18 17 16 20 20 C 1.50701 * 120.00221 * 359.97438 * 18 17 16 21 21 C 1.53001 * 109.47096 * 180.02562 * 20 18 17 22 22 C 1.50700 * 109.46806 * 180.02562 * 21 20 18 23 23 C 1.35352 * 126.91909 * 84.99671 * 22 21 20 24 24 N 1.33768 * 106.50028 * 179.97438 * 23 22 21 25 25 N 1.28638 * 108.88586 * 359.97438 * 24 23 22 26 26 N 1.28722 * 110.17531 * 359.75864 * 25 24 23 27 27 H 0.97001 * 125.86335 * 180.23845 * 26 25 24 28 28 C 1.47110 * 118.57516 * 54.24679 * 17 16 15 29 29 H 0.97001 * 119.99940 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.87739 * 298.38776 * 10 9 7 31 31 H 1.08996 * 109.87620 * 59.38700 * 10 9 7 32 32 H 1.09003 * 110.73728 * 96.95382 * 11 10 9 33 33 H 1.08996 * 110.73633 * 220.26516 * 11 10 9 34 34 H 1.08999 * 110.37886 * 322.15569 * 13 9 7 35 35 H 1.09002 * 110.37372 * 84.40100 * 13 9 7 36 36 H 1.09006 * 109.43765 * 297.54480 * 14 12 11 37 37 H 1.09002 * 109.43673 * 57.45916 * 14 12 11 38 38 H 1.09000 * 109.50313 * 179.90163 * 15 14 12 39 39 H 1.09006 * 109.50376 * 300.01618 * 15 14 12 40 40 H 1.09000 * 109.55860 * 64.52298 * 16 15 14 41 41 H 1.09001 * 109.56413 * 184.73901 * 16 15 14 42 42 H 1.09001 * 109.47152 * 300.00436 * 20 18 17 43 43 H 1.09002 * 109.46589 * 60.00562 * 20 18 17 44 44 H 1.09001 * 109.47007 * 299.99951 * 21 20 18 45 45 H 1.08989 * 109.47228 * 60.00228 * 21 20 18 46 46 H 1.08000 * 126.74848 * 359.94328 * 23 22 21 47 47 H 1.08996 * 109.57761 * 187.94591 * 28 17 16 48 48 H 1.09003 * 109.57112 * 67.55681 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1382 -2.5322 -0.0005 11 6 -0.4541 -4.0440 -0.0287 12 6 0.8504 -4.6548 -0.5895 13 6 1.9346 -3.7323 0.0005 14 6 0.8584 -4.5921 -2.1089 15 6 2.1846 -5.1442 -2.6410 16 6 2.3448 -6.5988 -2.1884 17 7 2.2264 -6.6588 -0.7251 18 6 3.1926 -7.2301 0.0209 19 8 3.0817 -7.2721 1.2280 20 6 4.4107 -7.8168 -0.6448 21 6 5.3435 -8.3978 0.4198 22 6 6.5619 -8.9839 -0.2459 23 6 7.6863 -8.3240 -0.6095 24 7 8.4986 -9.2326 -1.1608 25 7 7.9161 -10.3794 -1.1395 26 7 6.7544 -10.2771 -0.5944 27 1 6.1243 -11.0021 -0.4593 28 6 1.0304 -6.0820 -0.0917 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5555 -2.0831 0.9008 31 1 -0.5575 -2.0495 -0.8832 32 1 -0.6527 -4.4156 0.9766 33 1 -1.2952 -4.2502 -0.6906 34 1 2.8262 -3.7450 -0.6263 35 1 2.1820 -4.0368 1.0175 36 1 0.0341 -5.1879 -2.5009 37 1 0.7423 -3.5568 -2.4298 38 1 2.1866 -5.0995 -3.7300 39 1 3.0097 -4.5486 -2.2502 40 1 1.5653 -7.2103 -2.6429 41 1 3.3235 -6.9700 -2.4925 42 1 4.1049 -8.6074 -1.3301 43 1 4.9327 -7.0369 -1.1993 44 1 5.6493 -7.6075 1.1053 45 1 4.8213 -9.1776 0.9739 46 1 7.8878 -7.2708 -0.4804 47 1 1.1565 -6.0780 0.9910 48 1 0.1549 -6.6746 -0.3572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054199824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:53 Heat of formation + Delta-G solvation = 54.489152 kcal Electronic energy + Delta-G solvation = -29338.473597 eV Core-core repulsion = 25429.820014 eV Total energy + Delta-G solvation = -3908.653583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.27937 -41.56665 -39.82752 -37.24276 -35.48333 -34.75312 -34.12693 -33.04836 -32.09471 -31.02041 -30.02298 -27.56537 -26.88740 -25.86627 -24.70899 -23.95178 -23.24795 -22.58178 -21.96672 -20.31328 -19.29079 -19.18271 -18.86435 -17.97942 -17.19158 -16.88559 -16.67013 -16.57119 -16.28700 -15.82476 -15.32654 -15.18277 -15.01924 -14.66165 -14.57404 -14.34450 -14.11097 -13.89606 -13.67572 -13.41116 -13.24627 -13.15770 -12.80375 -12.73248 -12.72403 -12.31196 -12.22515 -12.12381 -12.06681 -11.98109 -11.77855 -11.68713 -11.57741 -11.54757 -11.28479 -11.13145 -10.72403 -10.69555 -10.13592 -9.51152 -8.88072 -7.85380 -5.19890 0.56637 1.43808 1.44898 1.53583 1.55023 1.69193 1.86107 2.12361 2.48419 3.32339 3.36482 3.61753 3.65368 3.71253 3.83966 3.94077 3.98565 4.03585 4.12004 4.15835 4.24734 4.32288 4.37542 4.49026 4.55547 4.60124 4.65933 4.67907 4.79824 4.82302 4.87427 4.93313 4.99423 5.03287 5.05804 5.08174 5.19543 5.22058 5.29084 5.43943 5.51152 5.56717 5.58275 5.70020 5.79514 6.01158 6.20146 6.52382 7.11000 7.24314 7.44110 7.78522 8.43523 9.25086 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.002762 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.394397 B =10135.672262 C =11143.712481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.294 1.294 7 C -0.238 4.238 8 H 0.077 0.923 9 N -0.623 5.623 10 C 0.188 3.812 11 C -0.123 4.123 12 C -0.070 4.070 13 C 0.153 3.847 14 C -0.094 4.094 15 C -0.133 4.133 16 C 0.110 3.890 17 N -0.608 5.608 18 C 0.510 3.490 19 O -0.586 6.586 20 C -0.127 4.127 21 C -0.026 4.026 22 C 0.012 3.988 23 C -0.056 4.056 24 N -0.303 5.303 25 N -0.110 5.110 26 N -0.372 5.372 27 H 0.463 0.537 28 C 0.137 3.863 29 H 0.246 0.754 30 H -0.003 1.003 31 H 0.014 0.986 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.039 0.961 35 H -0.004 1.004 36 H 0.084 0.916 37 H 0.037 0.963 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.208 0.792 47 H 0.067 0.933 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.281 -22.490 -6.288 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.221 1.221 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.349 5.349 10 C 0.063 3.937 11 C -0.162 4.162 12 C -0.072 4.072 13 C 0.028 3.972 14 C -0.132 4.132 15 C -0.171 4.171 16 C -0.012 4.012 17 N -0.340 5.340 18 C 0.300 3.700 19 O -0.466 6.466 20 C -0.167 4.167 21 C -0.066 4.066 22 C -0.123 4.123 23 C -0.214 4.214 24 N -0.170 5.170 25 N -0.090 5.090 26 N -0.096 5.096 27 H 0.312 0.688 28 C 0.014 3.986 29 H 0.055 0.945 30 H 0.015 0.985 31 H 0.032 0.968 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.013 0.987 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.114 0.886 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.130 0.870 42 H 0.141 0.859 43 H 0.133 0.867 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.224 0.776 47 H 0.086 0.914 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.353 -23.197 -6.362 24.878 hybrid contribution -1.003 2.052 1.029 2.506 sum 5.349 -21.145 -5.333 22.453 Atomic orbital electron populations 1.70196 1.06213 1.25066 1.58526 1.25604 0.96597 1.00847 1.02812 0.85054 0.78194 0.79646 0.76739 1.19103 1.21649 1.22131 1.19433 0.90764 0.83914 1.42615 0.90544 1.44815 1.02422 1.00967 1.86731 1.20879 0.83650 0.91835 0.97297 1.22757 0.97262 0.95190 1.00961 1.21339 0.94945 0.94012 0.96908 1.21546 0.95371 0.84612 0.95649 1.21199 0.98885 1.00671 0.92412 1.21958 0.96956 0.96308 1.01887 1.21997 1.04959 0.96491 0.77754 1.48260 1.20222 1.57027 1.08460 1.21147 0.84449 0.77547 0.86837 1.90709 1.79644 1.60135 1.16161 1.21701 0.92609 1.03183 0.99219 1.19814 0.89113 1.01413 0.96223 1.22301 1.00277 0.84700 1.05021 1.23902 0.91407 1.02408 1.03662 1.75092 1.26911 0.96435 1.18516 1.78246 0.94290 1.19200 1.17223 1.45158 1.14659 1.10144 1.39600 0.68819 1.21276 0.87935 0.91478 0.97920 0.94478 0.98476 0.96817 0.91666 0.89279 0.94260 0.98664 0.89748 0.94409 0.88567 0.93248 0.88682 0.86978 0.85876 0.86724 0.88626 0.88769 0.77550 0.91406 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.84 10.30 21.65 0.22 -57.62 16 2 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 3 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 7 C -0.24 -13.58 10.28 84.03 0.86 -12.72 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.62 -32.35 3.39 -692.76 -2.35 -34.70 16 10 C 0.19 9.34 5.02 86.77 0.44 9.78 16 11 C -0.12 -4.33 5.91 31.63 0.19 -4.14 16 12 C -0.07 -2.18 0.55 -51.84 -0.03 -2.20 16 13 C 0.15 6.33 5.96 86.54 0.52 6.84 16 14 C -0.09 -2.49 4.64 30.35 0.14 -2.35 16 15 C -0.13 -2.60 5.91 30.72 0.18 -2.42 16 16 C 0.11 1.41 6.32 86.36 0.55 1.96 16 17 N -0.61 -12.01 2.87 -820.28 -2.35 -14.37 16 18 C 0.51 10.40 7.70 87.66 0.68 11.08 16 19 O -0.59 -17.20 15.41 -3.06 -0.05 -17.24 16 20 C -0.13 -1.33 4.03 29.85 0.12 -1.21 16 21 C -0.03 -0.28 5.07 29.85 0.15 -0.13 16 22 C 0.01 0.15 6.56 41.36 0.27 0.42 16 23 C -0.06 -0.91 11.99 83.73 1.00 0.09 16 24 N -0.30 -6.77 12.41 -58.26 -0.72 -7.50 16 25 N -0.11 -2.16 13.38 37.02 0.50 -1.66 16 26 N -0.37 -4.30 6.98 -47.79 -0.33 -4.63 16 27 H 0.46 1.73 8.96 -219.95 -1.97 -0.24 16 28 C 0.14 3.42 5.12 86.01 0.44 3.86 16 29 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.00 -0.17 7.50 -2.39 -0.02 -0.19 16 31 H 0.01 0.75 7.37 -2.39 -0.02 0.73 16 32 H 0.06 2.20 8.01 -2.39 -0.02 2.18 16 33 H 0.09 2.66 8.01 -2.39 -0.02 2.64 16 34 H 0.04 1.59 6.10 -2.39 -0.01 1.58 16 35 H 0.00 -0.20 7.87 -2.39 -0.02 -0.22 16 36 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.04 1.32 7.85 -2.39 -0.02 1.30 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.22 6.33 -2.38 -0.02 1.21 16 40 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.11 0.80 5.95 -2.39 -0.01 0.78 16 42 H 0.12 0.58 7.93 -2.39 -0.02 0.56 16 43 H 0.11 1.01 7.71 -2.39 -0.02 0.99 16 44 H 0.10 1.33 8.10 -2.39 -0.02 1.31 16 45 H 0.09 0.95 8.10 -2.39 -0.02 0.93 16 46 H 0.21 2.44 8.06 -2.91 -0.02 2.41 16 47 H 0.07 2.07 6.84 -2.39 -0.02 2.06 16 48 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -81.39 375.58 1.92 -79.47 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -0.99 Total: 4.29 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.97 Total: 5.53 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -5.04 Total: -120.47 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.05 Total: -17.24 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -81.39 1.92 -79.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054199824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.964 kcal (2) G-P(sol) polarization free energy of solvation -81.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds