Wall clock time and date at job start Tue Mar 31 2020 18:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99828 * 2 1 4 4 H 1.48495 * 109.46996 * 269.99638 * 3 2 1 5 5 H 1.48501 * 109.47377 * 29.99723 * 3 2 1 6 6 H 1.48504 * 109.47230 * 149.99834 * 3 2 1 7 7 C 1.38811 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99900 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99967 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99663 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46822 * 35.00483 * 10 9 7 12 12 C 1.52997 * 109.47235 * 275.00138 * 10 9 7 13 13 C 1.53002 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47128 * 59.99726 * 13 12 10 15 15 C 1.52992 * 109.47106 * 300.00123 * 14 13 12 16 16 C 1.52997 * 109.47482 * 60.00162 * 15 14 13 17 17 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 18 18 N 1.46505 * 109.47212 * 179.97438 * 16 15 14 19 19 C 1.34769 * 119.99798 * 274.99913 * 18 16 15 20 20 O 1.21593 * 120.00332 * 0.02562 * 19 18 16 21 21 C 1.47527 * 119.99645 * 180.02562 * 19 18 16 22 22 C 1.36599 * 125.77082 * 179.71644 * 21 19 18 23 23 N 1.34812 * 106.83795 * 179.89270 * 22 21 19 24 24 C 1.46506 * 126.59328 * 180.10589 * 23 22 21 25 25 C 1.53779 * 113.61073 * 12.77414 * 24 23 22 26 26 C 1.53782 * 87.08130 * 220.02019 * 25 24 23 27 27 C 1.53781 * 87.08051 * 25.43399 * 26 25 24 28 28 N 1.40205 * 106.81359 * 0.36165 * 23 22 21 29 29 N 1.28764 * 108.36617 * 359.76801 * 28 23 22 30 30 H 0.96996 * 119.99634 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00314 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47045 * 300.00215 * 12 10 9 33 33 H 1.08998 * 109.47171 * 59.99556 * 12 10 9 34 34 H 1.08996 * 109.46698 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.46838 * 299.99316 * 13 12 10 36 36 H 1.09002 * 109.47070 * 60.00059 * 14 13 12 37 37 H 1.08996 * 109.46550 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.47103 * 299.99915 * 15 14 13 39 39 H 1.08998 * 109.46862 * 180.02562 * 15 14 13 40 40 H 0.97005 * 119.99239 * 94.99888 * 18 16 15 41 41 H 1.07998 * 126.57659 * 0.04227 * 22 21 19 42 42 H 1.08993 * 112.85006 * 144.08427 * 24 23 22 43 43 H 1.08998 * 113.62121 * 334.56897 * 25 24 23 44 44 H 1.09001 * 113.61374 * 105.47245 * 25 24 23 45 45 H 1.09002 * 113.61132 * 270.88947 * 26 25 24 46 46 H 1.09003 * 113.61655 * 139.98336 * 26 25 24 47 47 H 1.08996 * 113.61674 * 220.01538 * 27 26 25 48 48 H 1.08998 * 113.68609 * 89.12820 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 1 3.5650 -3.2062 -0.5888 12 6 4.2577 -2.9758 1.4380 13 6 5.0233 -4.3005 1.4380 14 6 6.4107 -4.0877 0.8291 15 6 6.2651 -3.5828 -0.6078 16 6 5.4996 -2.2581 -0.6078 17 1 6.0464 -1.5225 -0.0179 18 7 5.3607 -1.7744 -1.9837 19 6 6.3502 -1.0540 -2.5478 20 8 7.3585 -0.8059 -1.9150 21 6 6.2101 -0.5664 -3.9331 22 6 7.1323 0.1747 -4.6158 23 7 6.6184 0.4058 -5.8405 24 6 7.2517 1.1595 -6.9255 25 6 8.7437 1.4458 -6.6873 26 6 8.4893 2.8425 -7.2785 27 6 7.0264 2.6779 -6.8341 28 7 5.3586 -0.2087 -5.8742 29 7 5.1511 -0.7714 -4.7348 30 1 -0.4849 0.8400 0.0004 31 1 3.8647 -0.3621 0.0014 32 1 4.8048 -2.2403 2.0278 33 1 3.2693 -3.1268 1.8719 34 1 5.1273 -4.6599 2.4617 35 1 4.4764 -5.0361 0.8481 36 1 6.9575 -3.3521 1.4190 37 1 6.9561 -5.0314 0.8295 38 1 5.7183 -4.3185 -1.1977 39 1 7.2535 -3.4317 -1.0417 40 1 4.5565 -1.9727 -2.4886 41 1 8.0905 0.5091 -4.2463 42 1 7.0371 0.7448 -7.9104 43 1 9.0226 1.4619 -5.6337 44 1 9.4086 0.8299 -7.2928 45 1 8.6145 2.8880 -8.3604 46 1 9.0172 3.6405 -6.7564 47 1 6.3049 3.0567 -7.5579 48 1 6.8343 3.0306 -5.8208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085200824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:07 Heat of formation + Delta-G solvation = 83.582948 kcal Electronic energy + Delta-G solvation = -29100.173833 eV Core-core repulsion = 25192.781852 eV Total energy + Delta-G solvation = -3907.391981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.33352 -39.72464 -39.17438 -37.76068 -34.12557 -33.89510 -33.16008 -31.30690 -31.05754 -29.32452 -28.10083 -26.45673 -26.32244 -23.87341 -23.40128 -22.51920 -21.84567 -20.93075 -20.22391 -20.00327 -19.69120 -18.37152 -17.56365 -16.45109 -16.38443 -16.00547 -15.75514 -15.06086 -14.84834 -14.54036 -14.33586 -14.06336 -13.60303 -13.53130 -13.45421 -13.16630 -13.10829 -13.00263 -12.58190 -12.43364 -12.26236 -12.18508 -12.10878 -11.41904 -11.32345 -11.28446 -11.00295 -10.96445 -10.88378 -10.81597 -10.58022 -10.35899 -10.33172 -10.08060 -9.92274 -9.67424 -9.54838 -9.31373 -8.89329 -8.64079 -7.23797 -5.73561 -3.08737 1.06736 1.79625 1.88044 3.34484 3.41958 3.46074 3.48676 3.49120 3.61717 3.80509 4.09640 4.13167 4.19072 4.62287 4.63408 4.72813 4.90577 4.96185 4.98725 5.04404 5.09451 5.15908 5.23354 5.27708 5.31856 5.39530 5.45702 5.53038 5.64013 5.64461 5.72248 5.76962 5.86566 5.91603 5.95509 6.08121 6.27223 6.28835 6.41524 6.43528 6.46310 6.50844 6.80174 6.86324 7.03005 7.74486 8.01283 8.03378 8.44086 8.45549 9.23568 9.96582 10.15844 11.44713 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010476 B = 0.003688 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.111189 B = 7589.579298 C = 9488.864436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.009 3.991 3 Si 0.879 3.121 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.092 0.908 9 N -0.746 5.746 10 C 0.178 3.822 11 H 0.061 0.939 12 C -0.132 4.132 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.137 3.863 17 H 0.085 0.915 18 N -0.693 5.693 19 C 0.603 3.397 20 O -0.551 6.551 21 C -0.096 4.096 22 C 0.087 3.913 23 N -0.354 5.354 24 C 0.122 3.878 25 C -0.147 4.147 26 C -0.135 4.135 27 C -0.147 4.147 28 N -0.065 5.065 29 N -0.197 5.197 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.413 0.587 41 H 0.200 0.800 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.834 -0.223 -12.780 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.187 4.187 3 Si 0.710 3.290 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.109 0.891 9 N -0.388 5.388 10 C 0.067 3.933 11 H 0.079 0.921 12 C -0.173 4.173 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.032 3.968 17 H 0.103 0.897 18 N -0.342 5.342 19 C 0.387 3.613 20 O -0.428 6.428 21 C -0.236 4.236 22 C -0.069 4.069 23 N -0.138 5.138 24 C 0.021 3.979 25 C -0.185 4.185 26 C -0.173 4.173 27 C -0.185 4.185 28 N -0.045 5.045 29 N -0.070 5.070 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.250 0.750 41 H 0.217 0.783 42 H 0.151 0.849 43 H 0.115 0.885 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 20.012 -0.380 -13.211 23.982 hybrid contribution 0.972 1.529 0.233 1.827 sum 20.984 1.149 -12.978 24.700 Atomic orbital electron populations 1.69694 1.05044 1.25717 1.57596 1.24610 0.95116 0.96978 1.01998 0.86625 0.79264 0.85366 0.77756 1.21233 1.21835 1.20373 1.19037 0.80412 0.94647 1.42924 0.89065 1.42778 1.04023 1.01804 1.90189 1.20451 0.89130 0.89633 0.94038 0.92078 1.22181 1.00531 0.95482 0.99134 1.21582 0.95604 0.98467 1.00150 1.21478 0.97512 1.00548 0.95632 1.21868 1.00376 0.96689 0.97352 1.21419 0.98061 0.95609 0.81674 0.89674 1.45792 1.20218 1.52829 1.15343 1.16746 0.83468 0.77897 0.83217 1.90764 1.29833 1.59339 1.62906 1.21558 0.93809 1.09843 0.98352 1.23174 1.00791 0.97647 0.85306 1.50572 1.14751 1.37616 1.10895 1.23405 0.93474 0.91371 0.89686 1.23469 0.93563 0.98055 1.03441 1.22714 0.95936 0.96908 1.01767 1.23456 0.98245 0.93027 1.03791 1.82015 0.95727 1.11636 1.15120 1.74712 1.20945 1.13147 0.98236 0.93129 0.80587 0.92551 0.91045 0.92522 0.92125 0.91995 0.92257 0.91696 0.91794 0.75040 0.78289 0.84877 0.88538 0.89346 0.89012 0.89766 0.89568 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.50 13.97 55.49 0.78 -28.72 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 22.93 27.74 -169.99 -4.71 18.22 16 4 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 5 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.28 -6.94 6.52 56.52 0.37 -6.57 16 7 C -0.24 -6.69 10.41 -15.06 -0.16 -6.85 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.49 4.76 -53.42 -0.25 -17.74 16 10 C 0.18 3.33 2.29 -67.93 -0.16 3.18 16 11 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 12 C -0.13 -2.25 5.50 -26.73 -0.15 -2.40 16 13 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 14 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 15 C -0.12 -1.72 5.49 -26.74 -0.15 -1.87 16 16 C 0.14 2.30 1.97 -67.93 -0.13 2.17 16 17 H 0.09 1.56 7.58 -51.93 -0.39 1.16 16 18 N -0.69 -11.94 4.91 -54.85 -0.27 -12.21 16 19 C 0.60 10.39 7.78 -12.48 -0.10 10.29 16 20 O -0.55 -10.19 16.52 5.28 0.09 -10.10 16 21 C -0.10 -1.51 6.99 -83.55 -0.58 -2.10 16 22 C 0.09 1.06 10.49 -16.83 -0.18 0.88 16 23 N -0.35 -4.03 3.83 -53.77 -0.21 -4.23 16 24 C 0.12 0.85 5.06 -67.11 -0.34 0.51 16 25 C -0.15 -0.66 7.44 -25.92 -0.19 -0.86 16 26 C -0.14 -0.51 8.08 -25.92 -0.21 -0.72 16 27 C -0.15 -0.90 7.88 -25.92 -0.20 -1.11 16 28 N -0.07 -1.00 13.78 60.35 0.83 -0.17 16 29 N -0.20 -3.35 12.04 32.85 0.40 -2.96 16 30 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 31 H 0.36 8.73 5.66 -40.82 -0.23 8.50 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.41 7.32 8.29 -40.82 -0.34 6.98 16 41 H 0.20 1.77 6.78 -52.49 -0.36 1.41 16 42 H 0.13 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.10 0.44 6.39 -51.93 -0.33 0.11 16 44 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -34.51 388.14 -8.04 -42.55 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -7.58 Total: 11.57 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.96 Total: -2.06 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: 1.27 Total: -66.03 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.71 Total: 18.22 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.51 -8.04 -42.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085200824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.134 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds