Wall clock time and date at job start Tue Mar 31 2020 18:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99828 * 2 1 4 4 H 1.48495 * 109.46996 * 269.99638 * 3 2 1 5 5 H 1.48501 * 109.47377 * 29.99723 * 3 2 1 6 6 H 1.48504 * 109.47230 * 149.99834 * 3 2 1 7 7 C 1.38811 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99900 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99967 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99663 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46822 * 35.00483 * 10 9 7 12 12 C 1.52997 * 109.47235 * 275.00138 * 10 9 7 13 13 C 1.53002 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47128 * 59.99726 * 13 12 10 15 15 C 1.52992 * 109.47106 * 300.00123 * 14 13 12 16 16 C 1.52997 * 109.47482 * 60.00162 * 15 14 13 17 17 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 18 18 N 1.46505 * 109.47212 * 179.97438 * 16 15 14 19 19 C 1.34769 * 119.99798 * 274.99913 * 18 16 15 20 20 O 1.21593 * 120.00332 * 0.02562 * 19 18 16 21 21 C 1.47527 * 119.99645 * 180.02562 * 19 18 16 22 22 C 1.36599 * 125.77082 * 179.71644 * 21 19 18 23 23 N 1.34812 * 106.83795 * 179.89270 * 22 21 19 24 24 C 1.46506 * 126.59328 * 180.10589 * 23 22 21 25 25 C 1.53779 * 113.61073 * 12.77414 * 24 23 22 26 26 C 1.53782 * 87.08130 * 220.02019 * 25 24 23 27 27 C 1.53781 * 87.08051 * 25.43399 * 26 25 24 28 28 N 1.40205 * 106.81359 * 0.36165 * 23 22 21 29 29 N 1.28764 * 108.36617 * 359.76801 * 28 23 22 30 30 H 0.96996 * 119.99634 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00314 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47045 * 300.00215 * 12 10 9 33 33 H 1.08998 * 109.47171 * 59.99556 * 12 10 9 34 34 H 1.08996 * 109.46698 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.46838 * 299.99316 * 13 12 10 36 36 H 1.09002 * 109.47070 * 60.00059 * 14 13 12 37 37 H 1.08996 * 109.46550 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.47103 * 299.99915 * 15 14 13 39 39 H 1.08998 * 109.46862 * 180.02562 * 15 14 13 40 40 H 0.97005 * 119.99239 * 94.99888 * 18 16 15 41 41 H 1.07998 * 126.57659 * 0.04227 * 22 21 19 42 42 H 1.08993 * 112.85006 * 144.08427 * 24 23 22 43 43 H 1.08998 * 113.62121 * 334.56897 * 25 24 23 44 44 H 1.09001 * 113.61374 * 105.47245 * 25 24 23 45 45 H 1.09002 * 113.61132 * 270.88947 * 26 25 24 46 46 H 1.09003 * 113.61655 * 139.98336 * 26 25 24 47 47 H 1.08996 * 113.61674 * 220.01538 * 27 26 25 48 48 H 1.08998 * 113.68609 * 89.12820 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 1 3.5650 -3.2062 -0.5888 12 6 4.2577 -2.9758 1.4380 13 6 5.0233 -4.3005 1.4380 14 6 6.4107 -4.0877 0.8291 15 6 6.2651 -3.5828 -0.6078 16 6 5.4996 -2.2581 -0.6078 17 1 6.0464 -1.5225 -0.0179 18 7 5.3607 -1.7744 -1.9837 19 6 6.3502 -1.0540 -2.5478 20 8 7.3585 -0.8059 -1.9150 21 6 6.2101 -0.5664 -3.9331 22 6 7.1323 0.1747 -4.6158 23 7 6.6184 0.4058 -5.8405 24 6 7.2517 1.1595 -6.9255 25 6 8.7437 1.4458 -6.6873 26 6 8.4893 2.8425 -7.2785 27 6 7.0264 2.6779 -6.8341 28 7 5.3586 -0.2087 -5.8742 29 7 5.1511 -0.7714 -4.7348 30 1 -0.4849 0.8400 0.0004 31 1 3.8647 -0.3621 0.0014 32 1 4.8048 -2.2403 2.0278 33 1 3.2693 -3.1268 1.8719 34 1 5.1273 -4.6599 2.4617 35 1 4.4764 -5.0361 0.8481 36 1 6.9575 -3.3521 1.4190 37 1 6.9561 -5.0314 0.8295 38 1 5.7183 -4.3185 -1.1977 39 1 7.2535 -3.4317 -1.0417 40 1 4.5565 -1.9727 -2.4886 41 1 8.0905 0.5091 -4.2463 42 1 7.0371 0.7448 -7.9104 43 1 9.0226 1.4619 -5.6337 44 1 9.4086 0.8299 -7.2928 45 1 8.6145 2.8880 -8.3604 46 1 9.0172 3.6405 -6.7564 47 1 6.3049 3.0567 -7.5579 48 1 6.8343 3.0306 -5.8208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085200824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:06 Heat of formation + Delta-G solvation = 59.286874 kcal Electronic energy + Delta-G solvation = -29101.227390 eV Core-core repulsion = 25192.781852 eV Total energy + Delta-G solvation = -3908.445538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.35999 -40.99930 -39.80173 -39.11279 -35.93818 -35.21904 -34.13048 -33.33415 -32.18313 -30.62272 -29.64943 -27.08005 -26.84629 -25.42146 -24.91340 -23.39245 -23.07601 -22.45178 -21.47967 -20.96453 -20.54790 -19.85682 -19.11350 -17.58411 -17.33086 -17.19262 -16.78280 -16.47600 -16.12700 -15.81912 -15.68312 -15.30050 -15.02895 -14.75917 -14.68386 -14.46146 -14.22792 -13.79667 -13.69044 -13.65598 -13.53517 -13.26982 -13.07981 -12.98227 -12.91967 -12.40301 -12.17414 -12.08267 -12.06560 -11.86402 -11.84160 -11.73785 -11.53286 -11.46344 -11.30272 -11.16196 -11.07218 -10.90581 -10.42869 -9.97632 -9.31182 -8.03017 -5.34141 0.08431 0.57641 1.04624 1.31129 1.33278 1.39109 2.10523 2.22675 2.44462 3.03962 3.15867 3.29320 3.35597 3.45633 3.59569 3.70914 3.72551 3.77601 3.85711 4.12214 4.13636 4.19471 4.26563 4.39426 4.42798 4.47177 4.57136 4.59027 4.65322 4.68645 4.74030 4.88230 4.91146 4.96727 5.00924 5.03376 5.13397 5.25428 5.26292 5.30008 5.31744 5.46826 5.49516 5.53269 5.64339 5.78304 6.21390 6.42199 6.86535 7.06446 7.10911 7.82932 8.00682 9.18696 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010476 B = 0.003688 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.111189 B = 7589.579298 C = 9488.864436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.056 4.056 3 Si 0.941 3.059 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.260 1.260 7 C -0.215 4.215 8 H 0.065 0.935 9 N -0.749 5.749 10 C 0.174 3.826 11 H 0.055 0.945 12 C -0.127 4.127 13 C -0.112 4.112 14 C -0.108 4.108 15 C -0.116 4.116 16 C 0.145 3.855 17 H 0.073 0.927 18 N -0.699 5.699 19 C 0.604 3.396 20 O -0.566 6.566 21 C -0.126 4.126 22 C 0.107 3.893 23 N -0.336 5.336 24 C 0.102 3.898 25 C -0.138 4.138 26 C -0.120 4.120 27 C -0.152 4.152 28 N -0.093 5.093 29 N -0.230 5.230 30 H 0.256 0.744 31 H 0.359 0.641 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.409 0.591 41 H 0.234 0.766 42 H 0.147 0.853 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.515 -0.121 -13.491 27.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.248 4.248 3 Si 0.771 3.229 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.185 1.185 7 C -0.346 4.346 8 H 0.083 0.917 9 N -0.391 5.391 10 C 0.065 3.935 11 H 0.073 0.927 12 C -0.168 4.168 13 C -0.150 4.150 14 C -0.146 4.146 15 C -0.155 4.155 16 C 0.040 3.960 17 H 0.091 0.909 18 N -0.346 5.346 19 C 0.389 3.611 20 O -0.445 6.445 21 C -0.266 4.266 22 C -0.051 4.051 23 N -0.121 5.121 24 C 0.003 3.997 25 C -0.177 4.177 26 C -0.158 4.158 27 C -0.191 4.191 28 N -0.073 5.073 29 N -0.103 5.103 30 H 0.065 0.935 31 H 0.192 0.808 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.244 0.756 41 H 0.250 0.750 42 H 0.165 0.835 43 H 0.117 0.883 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.110 0.890 47 H 0.105 0.895 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 23.742 -0.307 -13.941 27.534 hybrid contribution -0.126 1.464 0.365 1.514 sum 23.616 1.156 -13.576 27.265 Atomic orbital electron populations 1.69845 1.06729 1.26249 1.60343 1.25267 0.95830 1.00287 1.03370 0.85608 0.78638 0.81320 0.77350 1.21793 1.22060 1.18533 1.19004 0.82277 0.93392 1.39907 0.91686 1.42799 1.02544 1.03567 1.90153 1.20684 0.89875 0.87429 0.95474 0.92719 1.22048 0.99944 0.97722 0.97050 1.21530 0.95663 0.96067 1.01728 1.21473 0.97000 1.01956 0.94171 1.21822 0.99904 0.94973 0.98785 1.21343 0.96465 0.96976 0.81221 0.90917 1.45870 1.20218 1.53148 1.15411 1.16915 0.83057 0.77408 0.83766 1.90738 1.30258 1.60023 1.63529 1.21582 0.94975 1.11927 0.98112 1.23623 1.00978 0.95625 0.84857 1.50928 1.13404 1.36174 1.11572 1.24090 0.95196 0.91284 0.89137 1.23519 0.91546 0.98561 1.04058 1.22707 0.93575 0.96649 1.02890 1.23491 1.00331 0.92190 1.03055 1.81908 0.97844 1.12714 1.14784 1.74675 1.22160 1.14405 0.99031 0.93525 0.80818 0.92739 0.93420 0.90523 0.91589 0.91858 0.89403 0.90969 0.91560 0.75564 0.74969 0.83537 0.88327 0.87545 0.87265 0.88980 0.89474 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.00 13.97 21.65 0.30 -63.69 16 2 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 3 Si 0.94 48.37 27.74 68.60 1.90 50.28 16 4 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 5 H -0.29 -15.11 7.11 99.48 0.71 -14.40 16 6 H -0.26 -12.45 6.52 99.48 0.65 -11.80 16 7 C -0.21 -12.27 10.41 84.03 0.87 -11.39 16 8 H 0.07 4.01 8.06 -2.91 -0.02 3.99 16 9 N -0.75 -35.43 4.76 -322.93 -1.54 -36.97 16 10 C 0.17 6.52 2.29 44.99 0.10 6.62 16 11 H 0.05 2.13 8.08 -2.39 -0.02 2.11 16 12 C -0.13 -4.24 5.50 30.59 0.17 -4.07 16 13 C -0.11 -2.73 5.92 30.60 0.18 -2.55 16 14 C -0.11 -2.37 5.92 30.59 0.18 -2.19 16 15 C -0.12 -2.99 5.49 30.59 0.17 -2.83 16 16 C 0.14 4.75 1.97 44.99 0.09 4.84 16 17 H 0.07 2.60 7.58 -2.39 -0.02 2.58 16 18 N -0.70 -24.08 4.91 -445.71 -2.19 -26.26 16 19 C 0.60 20.56 7.78 86.69 0.67 21.24 16 20 O -0.57 -20.35 16.52 -4.01 -0.07 -20.42 16 21 C -0.13 -3.92 6.99 40.82 0.29 -3.63 16 22 C 0.11 2.43 10.49 83.85 0.88 3.31 16 23 N -0.34 -7.24 3.83 -324.04 -1.24 -8.48 16 24 C 0.10 1.21 5.06 45.52 0.23 1.44 16 25 C -0.14 -0.79 7.44 31.12 0.23 -0.55 16 26 C -0.12 -0.52 8.08 31.12 0.25 -0.27 16 27 C -0.15 -1.60 7.88 31.12 0.25 -1.35 16 28 N -0.09 -2.86 13.78 37.02 0.51 -2.35 16 29 N -0.23 -7.96 12.04 -49.99 -0.60 -8.56 16 30 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 31 H 0.36 17.29 5.66 -92.71 -0.52 16.77 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.41 14.83 8.29 -92.70 -0.77 14.06 16 41 H 0.23 3.46 6.78 -2.91 -0.02 3.44 16 42 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.10 0.55 6.39 -2.39 -0.02 0.54 16 44 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 47 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -77.31 388.14 1.75 -75.56 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: -0.37 Total: 35.18 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.03 Total: 5.70 kcal Atomic # 7 Polarization: -141.56 SS G_CDS: -4.75 Total: -146.31 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.07 Total: -20.42 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 1.90 Total: 50.28 kcal Total: -77.31 1.75 -75.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085200824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.852 kcal (2) G-P(sol) polarization free energy of solvation -77.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds