Wall clock time and date at job start Tue Mar 31 2020 18:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99425 * 2 1 4 4 H 1.48505 * 109.46803 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47378 * 300.00075 * 3 2 1 6 6 H 1.48501 * 109.46907 * 60.00523 * 3 2 1 7 7 C 1.38806 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00085 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99747 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.47378 * 34.99427 * 10 9 7 12 12 C 1.53006 * 109.46883 * 274.99621 * 10 9 7 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46817 * 60.00361 * 13 12 10 15 15 C 1.52996 * 109.46972 * 299.99733 * 14 13 12 16 16 C 1.52997 * 109.47131 * 60.00459 * 15 14 13 17 17 H 1.08993 * 109.47194 * 60.00154 * 16 15 14 18 18 N 1.46506 * 109.46949 * 180.02562 * 16 15 14 19 19 C 1.34783 * 119.99811 * 274.99482 * 18 16 15 20 20 O 1.21287 * 119.99943 * 0.02562 * 19 18 16 21 21 C 1.50696 * 120.00006 * 179.97438 * 19 18 16 22 22 N 1.46505 * 109.47096 * 180.02562 * 21 19 18 23 23 C 1.35311 * 125.86490 * 124.71687 * 22 21 19 24 24 C 1.35350 * 106.17377 * 179.90727 * 23 22 21 25 25 C 1.50700 * 126.75164 * 180.12879 * 24 23 22 26 26 C 1.53008 * 117.49968 * 343.91585 * 25 24 23 27 27 C 1.52998 * 117.49816 * 275.29471 * 25 24 23 28 28 N 1.33771 * 106.49615 * 0.35123 * 24 23 22 29 29 N 1.28632 * 108.88731 * 359.77615 * 28 24 23 30 30 H 0.96993 * 120.00253 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00081 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46801 * 300.00349 * 12 10 9 33 33 H 1.09001 * 109.46998 * 59.99945 * 12 10 9 34 34 H 1.09002 * 109.47153 * 180.02562 * 13 12 10 35 35 H 1.08996 * 109.46952 * 300.00302 * 13 12 10 36 36 H 1.08996 * 109.47407 * 60.00219 * 14 13 12 37 37 H 1.09000 * 109.46986 * 179.97438 * 14 13 12 38 38 H 1.09001 * 109.46993 * 180.02562 * 15 14 13 39 39 H 1.09000 * 109.47380 * 299.99696 * 15 14 13 40 40 H 0.97000 * 120.00279 * 94.99983 * 18 16 15 41 41 H 1.08997 * 109.47646 * 300.00758 * 21 19 18 42 42 H 1.09002 * 109.46942 * 60.00572 * 21 19 18 43 43 H 1.08005 * 126.91087 * 0.02562 * 23 22 21 44 44 H 1.08998 * 115.55415 * 129.62453 * 25 24 23 45 45 H 1.09004 * 117.49479 * 0.02562 * 26 25 24 46 46 H 1.08989 * 117.49963 * 145.02039 * 26 25 24 47 47 H 1.09000 * 117.50331 * 214.97920 * 27 25 24 48 48 H 1.09008 * 117.49998 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9690 -3.5504 0.5888 12 6 2.4221 -4.0355 -1.4376 13 6 3.1867 -5.3607 -1.4378 14 6 2.3090 -6.4558 -0.8283 15 6 1.9452 -6.0771 0.6087 16 6 1.1807 -4.7518 0.6088 17 1 0.2700 -4.8577 0.0194 18 7 0.8328 -4.3888 1.9849 19 6 -0.2852 -4.8852 2.5507 20 8 -1.0032 -5.6328 1.9207 21 6 -0.6427 -4.5124 3.9663 22 7 -1.8922 -5.1768 4.3456 23 6 -2.0686 -5.9795 5.4206 24 6 -3.3637 -6.3714 5.3900 25 6 -4.0560 -7.2747 6.3778 26 6 -3.1751 -8.1099 7.3092 27 6 -3.9310 -8.7843 6.1626 28 7 -3.9071 -5.8031 4.3077 29 7 -3.0092 -5.1018 3.7105 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3880 0.0002 32 1 1.5114 -4.1417 -2.0270 33 1 3.0469 -3.2550 -1.8720 34 1 3.4463 -5.6303 -2.4615 35 1 4.0973 -5.2548 -0.8482 36 1 1.3983 -6.5617 -1.4179 37 1 2.8535 -7.4001 -0.8288 38 1 1.3203 -6.8574 1.0430 39 1 2.8559 -5.9713 1.1982 40 1 1.4072 -3.7912 2.4888 41 1 0.1552 -4.8289 4.6380 42 1 -0.7695 -3.4320 4.0365 43 1 -1.3258 -6.2511 6.1562 44 1 -4.9981 -6.8997 6.7778 45 1 -2.0948 -8.0056 7.2078 46 1 -3.5375 -8.2843 8.3222 47 1 -4.7906 -9.4026 6.4213 48 1 -3.3476 -9.1242 5.3068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085224810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:51 Heat of formation + Delta-G solvation = 92.632719 kcal Electronic energy + Delta-G solvation = -28765.302093 eV Core-core repulsion = 24858.302539 eV Total energy + Delta-G solvation = -3906.999554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.26270 -39.90442 -38.03662 -37.44442 -34.39725 -34.13397 -33.91630 -31.22424 -30.73564 -29.98455 -28.51595 -27.40909 -24.18958 -23.80645 -23.14696 -22.57045 -21.61631 -21.15013 -20.74767 -20.17350 -19.53302 -17.74441 -17.48473 -17.07103 -16.21599 -15.94297 -15.49391 -15.26723 -14.97814 -14.67614 -14.58238 -14.15382 -13.96701 -13.71167 -13.54620 -13.03760 -12.89485 -12.75381 -12.50251 -12.18395 -12.13253 -11.81335 -11.54738 -11.25532 -11.15360 -10.99550 -10.93363 -10.91277 -10.83193 -10.65724 -10.44570 -10.41457 -10.28357 -10.19777 -9.84090 -9.72928 -9.58710 -9.05801 -8.99764 -8.77131 -7.06255 -5.84252 -3.15068 1.56971 2.14976 2.52714 2.61261 3.27552 3.36137 3.41941 3.44848 3.54988 4.08295 4.40194 4.48961 4.59438 4.62296 4.65462 4.71745 4.85628 4.97634 5.02925 5.06503 5.20959 5.22461 5.35234 5.43479 5.45562 5.57514 5.63276 5.71166 5.72578 5.80753 5.83183 5.87281 5.89578 5.93406 6.04644 6.10423 6.21390 6.36827 6.39074 6.39998 6.47128 6.50920 6.72701 6.80562 6.99003 7.61228 7.63533 8.28744 8.32440 8.60106 9.44230 9.99784 10.34873 11.37283 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.002940 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.069929 B = 9520.218202 C =11288.695359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.722 5.722 10 C 0.174 3.826 11 H 0.051 0.949 12 C -0.134 4.134 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.143 3.857 17 H 0.086 0.914 18 N -0.700 5.700 19 C 0.503 3.497 20 O -0.519 6.519 21 C 0.094 3.906 22 N -0.276 5.276 23 C -0.053 4.053 24 C 0.005 3.995 25 C -0.068 4.068 26 C -0.171 4.171 27 C -0.166 4.166 28 N -0.268 5.268 29 N -0.043 5.043 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.405 0.595 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.187 0.813 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.506 -16.062 13.232 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.207 4.207 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.363 5.363 10 C 0.063 3.937 11 H 0.069 0.931 12 C -0.175 4.175 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.038 3.962 17 H 0.104 0.896 18 N -0.351 5.351 19 C 0.286 3.714 20 O -0.394 6.394 21 C -0.032 4.032 22 N -0.069 5.069 23 C -0.203 4.203 24 C -0.132 4.132 25 C -0.089 4.089 26 C -0.209 4.209 27 C -0.204 4.204 28 N -0.135 5.135 29 N -0.022 5.022 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.240 0.760 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.204 0.796 44 H 0.139 0.861 45 H 0.113 0.887 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.390 -15.798 11.543 19.615 hybrid contribution 1.209 1.036 1.012 1.887 sum 2.599 -14.762 12.555 19.552 Atomic orbital electron populations 1.69679 1.05057 1.25658 1.57040 1.24755 0.95444 0.97656 1.02799 0.86176 0.78738 0.84321 0.77238 1.20601 1.21873 1.21920 1.19219 0.90903 0.83933 1.43347 0.91147 1.42444 1.05843 0.99451 1.88578 1.20459 0.93816 0.85715 0.93684 0.93082 1.22230 1.00037 0.95557 0.99650 1.21582 0.98477 0.95642 1.00060 1.21469 1.00003 0.98085 0.95658 1.21861 0.99905 0.97074 0.97372 1.21363 0.99266 0.94160 0.81445 0.89582 1.45766 1.24507 1.49041 1.15751 1.20054 0.81850 0.81726 0.87783 1.90809 1.49737 1.35659 1.63164 1.21949 0.83125 1.00830 0.97283 1.46758 1.10225 1.32407 1.17535 1.23190 0.99999 1.01270 0.95795 1.20961 0.91644 1.03157 0.97436 1.19966 1.00274 0.90661 0.97950 1.23008 0.98603 1.03591 0.95670 1.23002 1.03046 0.93908 1.00397 1.75102 1.23365 1.09079 1.05963 1.78548 0.88015 1.17905 1.17754 0.93452 0.78076 0.92402 0.91492 0.92610 0.92365 0.91919 0.92334 0.92092 0.91967 0.76013 0.84991 0.84823 0.79594 0.86122 0.88654 0.88040 0.88142 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.04 13.06 55.49 0.72 -26.32 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.90 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.72 -16.50 4.95 -53.42 -0.26 -16.76 16 10 C 0.17 3.07 2.29 -67.93 -0.16 2.91 16 11 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 12 C -0.13 -2.22 5.50 -26.73 -0.15 -2.37 16 13 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 14 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 15 C -0.12 -1.62 5.49 -26.73 -0.15 -1.76 16 16 C 0.14 2.25 1.98 -67.93 -0.13 2.12 16 17 H 0.09 1.63 7.58 -51.93 -0.39 1.23 16 18 N -0.70 -9.95 4.91 -53.81 -0.26 -10.22 16 19 C 0.50 7.56 7.81 -10.98 -0.09 7.48 16 20 O -0.52 -10.12 15.34 5.55 0.09 -10.04 16 21 C 0.09 1.03 6.94 -5.19 -0.04 0.99 16 22 N -0.28 -3.85 3.20 -62.44 -0.20 -4.05 16 23 C -0.05 -0.60 10.89 -17.05 -0.19 -0.78 16 24 C 0.01 0.07 6.88 -82.78 -0.57 -0.50 16 25 C -0.07 -0.66 6.33 -91.77 -0.58 -1.25 16 26 C -0.17 -1.16 10.03 -26.73 -0.27 -1.42 16 27 C -0.17 -1.38 10.23 -26.73 -0.27 -1.65 16 28 N -0.27 -4.67 12.41 33.29 0.41 -4.26 16 29 N -0.04 -0.78 12.13 60.35 0.73 -0.04 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.39 9.86 7.80 -40.82 -0.32 9.55 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.41 5.07 8.60 -40.82 -0.35 4.72 16 41 H 0.13 0.79 8.07 -51.93 -0.42 0.37 16 42 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.19 1.25 7.45 -52.48 -0.39 0.86 16 44 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.10 0.57 7.22 -51.93 -0.38 0.19 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -34.77 395.29 -8.70 -43.47 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -7.71 Total: 12.11 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -3.15 Total: -6.25 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 1.14 Total: -61.65 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.77 -8.70 -43.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085224810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.100 kcal (2) G-P(sol) polarization free energy of solvation -34.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds