Wall clock time and date at job start Tue Mar 31 2020 18:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99425 * 2 1 4 4 H 1.48505 * 109.46803 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47378 * 300.00075 * 3 2 1 6 6 H 1.48501 * 109.46907 * 60.00523 * 3 2 1 7 7 C 1.38806 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00085 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99747 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.47378 * 34.99427 * 10 9 7 12 12 C 1.53006 * 109.46883 * 274.99621 * 10 9 7 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46817 * 60.00361 * 13 12 10 15 15 C 1.52996 * 109.46972 * 299.99733 * 14 13 12 16 16 C 1.52997 * 109.47131 * 60.00459 * 15 14 13 17 17 H 1.08993 * 109.47194 * 60.00154 * 16 15 14 18 18 N 1.46506 * 109.46949 * 180.02562 * 16 15 14 19 19 C 1.34783 * 119.99811 * 274.99482 * 18 16 15 20 20 O 1.21287 * 119.99943 * 0.02562 * 19 18 16 21 21 C 1.50696 * 120.00006 * 179.97438 * 19 18 16 22 22 N 1.46505 * 109.47096 * 180.02562 * 21 19 18 23 23 C 1.35311 * 125.86490 * 124.71687 * 22 21 19 24 24 C 1.35350 * 106.17377 * 179.90727 * 23 22 21 25 25 C 1.50700 * 126.75164 * 180.12879 * 24 23 22 26 26 C 1.53008 * 117.49968 * 343.91585 * 25 24 23 27 27 C 1.52998 * 117.49816 * 275.29471 * 25 24 23 28 28 N 1.33771 * 106.49615 * 0.35123 * 24 23 22 29 29 N 1.28632 * 108.88731 * 359.77615 * 28 24 23 30 30 H 0.96993 * 120.00253 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00081 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46801 * 300.00349 * 12 10 9 33 33 H 1.09001 * 109.46998 * 59.99945 * 12 10 9 34 34 H 1.09002 * 109.47153 * 180.02562 * 13 12 10 35 35 H 1.08996 * 109.46952 * 300.00302 * 13 12 10 36 36 H 1.08996 * 109.47407 * 60.00219 * 14 13 12 37 37 H 1.09000 * 109.46986 * 179.97438 * 14 13 12 38 38 H 1.09001 * 109.46993 * 180.02562 * 15 14 13 39 39 H 1.09000 * 109.47380 * 299.99696 * 15 14 13 40 40 H 0.97000 * 120.00279 * 94.99983 * 18 16 15 41 41 H 1.08997 * 109.47646 * 300.00758 * 21 19 18 42 42 H 1.09002 * 109.46942 * 60.00572 * 21 19 18 43 43 H 1.08005 * 126.91087 * 0.02562 * 23 22 21 44 44 H 1.08998 * 115.55415 * 129.62453 * 25 24 23 45 45 H 1.09004 * 117.49479 * 0.02562 * 26 25 24 46 46 H 1.08989 * 117.49963 * 145.02039 * 26 25 24 47 47 H 1.09000 * 117.50331 * 214.97920 * 27 25 24 48 48 H 1.09008 * 117.49998 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9690 -3.5504 0.5888 12 6 2.4221 -4.0355 -1.4376 13 6 3.1867 -5.3607 -1.4378 14 6 2.3090 -6.4558 -0.8283 15 6 1.9452 -6.0771 0.6087 16 6 1.1807 -4.7518 0.6088 17 1 0.2700 -4.8577 0.0194 18 7 0.8328 -4.3888 1.9849 19 6 -0.2852 -4.8852 2.5507 20 8 -1.0032 -5.6328 1.9207 21 6 -0.6427 -4.5124 3.9663 22 7 -1.8922 -5.1768 4.3456 23 6 -2.0686 -5.9795 5.4206 24 6 -3.3637 -6.3714 5.3900 25 6 -4.0560 -7.2747 6.3778 26 6 -3.1751 -8.1099 7.3092 27 6 -3.9310 -8.7843 6.1626 28 7 -3.9071 -5.8031 4.3077 29 7 -3.0092 -5.1018 3.7105 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3880 0.0002 32 1 1.5114 -4.1417 -2.0270 33 1 3.0469 -3.2550 -1.8720 34 1 3.4463 -5.6303 -2.4615 35 1 4.0973 -5.2548 -0.8482 36 1 1.3983 -6.5617 -1.4179 37 1 2.8535 -7.4001 -0.8288 38 1 1.3203 -6.8574 1.0430 39 1 2.8559 -5.9713 1.1982 40 1 1.4072 -3.7912 2.4888 41 1 0.1552 -4.8289 4.6380 42 1 -0.7695 -3.4320 4.0365 43 1 -1.3258 -6.2511 6.1562 44 1 -4.9981 -6.8997 6.7778 45 1 -2.0948 -8.0056 7.2078 46 1 -3.5375 -8.2843 8.3222 47 1 -4.7906 -9.4026 6.4213 48 1 -3.3476 -9.1242 5.3068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085224810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:50 Heat of formation + Delta-G solvation = 67.905897 kcal Electronic energy + Delta-G solvation = -28766.374328 eV Core-core repulsion = 24858.302539 eV Total energy + Delta-G solvation = -3908.071789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.28952 -41.15007 -39.30688 -38.14087 -35.83014 -35.43269 -35.21993 -33.00711 -31.69885 -31.13937 -29.85140 -28.72807 -25.64867 -25.02932 -24.20226 -23.36765 -22.71758 -22.43136 -21.74332 -21.29247 -20.72969 -19.23005 -18.55701 -18.50383 -17.22686 -17.19627 -16.64061 -16.33170 -16.29495 -15.72447 -15.54628 -15.47048 -15.29826 -15.02281 -14.70723 -14.62414 -14.11384 -13.94254 -13.56408 -13.49752 -13.28680 -12.92292 -12.85842 -12.53585 -12.28346 -12.22725 -12.18774 -12.16778 -12.03481 -12.01305 -11.73569 -11.66464 -11.45958 -11.39614 -11.18926 -11.11349 -10.96754 -10.71110 -10.02933 -9.98561 -9.00351 -7.91167 -5.20641 0.58901 1.24346 1.46687 1.47677 1.49741 1.50007 1.58479 2.17787 2.56701 2.88969 3.28377 3.41984 3.54502 3.67948 3.71431 3.82112 3.89907 4.00250 4.02861 4.07073 4.11799 4.24502 4.28538 4.30551 4.41503 4.42360 4.48741 4.57714 4.68080 4.80069 4.86525 4.92997 4.99070 4.99351 5.13559 5.20842 5.22153 5.23876 5.28247 5.29217 5.31743 5.43794 5.49886 5.53968 5.56718 5.66039 6.27929 6.48407 7.15369 7.34911 7.53263 8.08555 8.32313 9.31749 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.002940 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.069929 B = 9520.218202 C =11288.695359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.304 1.304 6 H -0.296 1.296 7 C -0.226 4.226 8 H 0.083 0.917 9 N -0.732 5.732 10 C 0.174 3.826 11 H 0.068 0.932 12 C -0.131 4.131 13 C -0.109 4.109 14 C -0.113 4.113 15 C -0.112 4.112 16 C 0.151 3.849 17 H 0.045 0.955 18 N -0.693 5.693 19 C 0.499 3.501 20 O -0.571 6.571 21 C 0.095 3.905 22 N -0.277 5.277 23 C -0.031 4.031 24 C -0.010 4.010 25 C -0.093 4.093 26 C -0.139 4.139 27 C -0.174 4.174 28 N -0.312 5.312 29 N -0.109 5.109 30 H 0.247 0.753 31 H 0.367 0.633 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.416 0.584 41 H 0.195 0.805 42 H 0.142 0.858 43 H 0.241 0.759 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.124 0.876 47 H 0.113 0.887 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.042 -17.686 15.919 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.232 1.232 6 H -0.224 1.224 7 C -0.358 4.358 8 H 0.100 0.900 9 N -0.371 5.371 10 C 0.065 3.935 11 H 0.086 0.914 12 C -0.171 4.171 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.151 4.151 16 C 0.045 3.955 17 H 0.063 0.937 18 N -0.344 5.344 19 C 0.284 3.716 20 O -0.449 6.449 21 C -0.029 4.029 22 N -0.070 5.070 23 C -0.182 4.182 24 C -0.149 4.149 25 C -0.113 4.113 26 C -0.176 4.176 27 C -0.212 4.212 28 N -0.178 5.178 29 N -0.087 5.087 30 H 0.055 0.945 31 H 0.198 0.802 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.253 0.747 41 H 0.212 0.788 42 H 0.159 0.841 43 H 0.257 0.743 44 H 0.138 0.862 45 H 0.129 0.871 46 H 0.143 0.857 47 H 0.131 0.869 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.996 -17.434 14.221 23.047 hybrid contribution 0.143 1.436 0.172 1.454 sum 5.139 -15.998 14.393 22.125 Atomic orbital electron populations 1.69854 1.06739 1.25608 1.59947 1.25493 0.96076 1.00904 1.04296 0.85168 0.78543 0.80416 0.76173 1.18535 1.23241 1.22360 1.19611 0.91437 0.84676 1.40045 0.89956 1.42633 1.05135 1.00826 1.88516 1.20680 0.94026 0.84101 0.94714 0.91444 1.22121 0.99329 0.97579 0.98118 1.21508 0.98460 0.93176 1.01535 1.21485 0.99628 0.99209 0.94742 1.21780 1.00225 0.94724 0.98339 1.21142 0.97436 0.95137 0.81789 0.93715 1.45702 1.24676 1.48949 1.15086 1.20742 0.80984 0.80673 0.89247 1.90795 1.51160 1.38107 1.64854 1.22269 0.83692 1.01311 0.95598 1.47001 1.09930 1.32382 1.17714 1.24015 1.00309 0.98720 0.95120 1.21660 0.92838 1.03429 0.96941 1.20082 1.01391 0.90832 0.99010 1.23172 0.98992 0.99627 0.95816 1.23046 1.04002 0.93036 1.01088 1.75008 1.24660 1.10249 1.07851 1.78484 0.89798 1.20456 1.20011 0.94454 0.80180 0.94678 0.93023 0.91167 0.90421 0.93529 0.89419 0.92765 0.89381 0.74741 0.78826 0.84052 0.74307 0.86188 0.87126 0.85742 0.86890 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.51 13.06 21.65 0.28 -58.22 16 2 C -0.08 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 44.38 29.55 68.60 2.03 46.40 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.23 -11.47 9.93 84.03 0.83 -10.64 16 8 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.73 -33.90 4.95 -322.94 -1.60 -35.50 16 10 C 0.17 6.01 2.29 44.99 0.10 6.11 16 11 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 12 C -0.13 -4.28 5.50 30.60 0.17 -4.11 16 13 C -0.11 -2.54 5.92 30.59 0.18 -2.36 16 14 C -0.11 -2.55 5.92 30.59 0.18 -2.37 16 15 C -0.11 -2.71 5.49 30.59 0.17 -2.54 16 16 C 0.15 4.74 1.98 44.99 0.09 4.82 16 17 H 0.04 1.79 7.58 -2.39 -0.02 1.78 16 18 N -0.69 -19.19 4.91 -442.52 -2.17 -21.37 16 19 C 0.50 14.91 7.81 87.65 0.68 15.60 16 20 O -0.57 -23.21 15.34 -3.05 -0.05 -23.26 16 21 C 0.10 1.91 6.94 85.63 0.59 2.50 16 22 N -0.28 -7.52 3.20 -351.46 -1.12 -8.64 16 23 C -0.03 -0.63 10.89 83.49 0.91 0.28 16 24 C -0.01 -0.27 6.88 41.60 0.29 0.02 16 25 C -0.09 -1.70 6.33 -11.54 -0.07 -1.77 16 26 C -0.14 -1.39 10.03 30.60 0.31 -1.09 16 27 C -0.17 -2.66 10.23 30.59 0.31 -2.34 16 28 N -0.31 -11.42 12.41 -48.60 -0.60 -12.02 16 29 N -0.11 -4.15 12.13 37.02 0.45 -3.71 16 30 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 31 H 0.37 19.61 7.80 -92.71 -0.72 18.89 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.42 9.62 8.60 -92.71 -0.80 8.82 16 41 H 0.19 1.35 8.07 -2.39 -0.02 1.33 16 42 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.24 1.91 7.45 -2.91 -0.02 1.89 16 44 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.11 0.78 7.22 -2.38 -0.02 0.77 16 46 H 0.12 0.72 8.14 -2.39 -0.02 0.71 16 47 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.08 1.46 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -83.19 395.29 1.89 -81.30 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.54 Total: 36.59 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 5.21 Total: -1.57 kcal Atomic # 7 Polarization: -134.69 SS G_CDS: -4.77 Total: -139.46 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -83.19 1.89 -81.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085224810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.208 kcal (2) G-P(sol) polarization free energy of solvation -83.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds