Wall clock time and date at job start Tue Mar 31 2020 18:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47145 * 239.99733 * 3 2 1 5 5 H 1.48498 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47170 * 119.99933 * 3 2 1 7 7 C 1.38814 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99700 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47021 * 34.99609 * 10 9 7 12 12 C 1.52999 * 109.47487 * 274.99944 * 10 9 7 13 13 C 1.52997 * 109.47317 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47060 * 59.99960 * 13 12 10 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 12 16 16 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 17 17 H 1.09002 * 109.47153 * 60.00231 * 16 15 14 18 18 N 1.46500 * 109.47007 * 180.02562 * 16 15 14 19 19 C 1.34772 * 120.00198 * 274.99841 * 18 16 15 20 20 O 1.21292 * 119.99872 * 0.02562 * 19 18 16 21 21 C 1.50699 * 120.00302 * 180.02562 * 19 18 16 22 22 H 1.09002 * 109.68956 * 300.54828 * 21 19 18 23 23 C 1.53436 * 109.69262 * 180.02562 * 21 19 18 24 24 C 1.53113 * 109.55600 * 190.56204 * 23 21 19 25 25 C 1.53419 * 109.57577 * 70.05443 * 24 23 21 26 26 C 1.50599 * 108.33960 * 310.17643 * 25 24 23 27 27 N 1.32910 * 129.16824 * 196.57416 * 26 25 24 28 28 N 1.29017 * 108.63496 * 179.85032 * 27 26 25 29 29 N 1.29103 * 110.26238 * 0.03159 * 28 27 26 30 30 H 0.96998 * 126.00773 * 180.02562 * 29 28 27 31 31 C 1.34403 * 107.98356 * 0.05985 * 29 28 27 32 32 H 0.96996 * 120.00649 * 0.02562 * 1 2 3 33 33 H 0.97007 * 120.00049 * 359.97438 * 9 7 2 34 34 H 1.08996 * 109.46929 * 59.99046 * 12 10 9 35 35 H 1.09002 * 109.46716 * 299.99851 * 12 10 9 36 36 H 1.09002 * 109.47153 * 299.99641 * 13 12 10 37 37 H 1.09001 * 109.46832 * 179.97438 * 13 12 10 38 38 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 39 39 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 40 40 H 1.08993 * 109.47662 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 42 42 H 0.97002 * 120.00110 * 95.00836 * 18 16 15 43 43 H 1.08996 * 109.45885 * 310.58645 * 23 21 19 44 44 H 1.08999 * 109.45577 * 70.54129 * 23 21 19 45 45 H 1.08991 * 109.45485 * 190.09030 * 24 23 21 46 46 H 1.09000 * 109.45295 * 310.04854 * 24 23 21 47 47 H 1.08998 * 109.69417 * 69.89072 * 25 24 23 48 48 H 1.09003 * 109.69028 * 190.46779 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9688 -3.5505 0.5899 12 6 2.4220 -4.0356 -1.4364 13 6 3.1876 -5.3603 -1.4363 14 6 2.3109 -6.4559 -0.8264 15 6 1.9470 -6.0771 0.6106 16 6 1.1815 -4.7524 0.6105 17 1 0.2707 -4.8592 0.0212 18 7 0.8336 -4.3894 1.9865 19 6 -0.2838 -4.8864 2.5526 20 8 -1.0013 -5.6348 1.9230 21 6 -0.6420 -4.5125 3.9679 22 1 0.1585 -4.8174 4.6421 23 6 -1.9495 -5.2070 4.3710 24 6 -2.4493 -4.6282 5.6975 25 6 -2.9370 -3.1900 5.4795 26 6 -1.8687 -2.4353 4.7330 27 7 -1.7144 -1.1234 4.5866 28 7 -0.6617 -0.9093 3.8720 29 7 -0.1125 -2.0290 3.5384 30 1 0.6895 -2.1336 3.0029 31 6 -0.8478 -3.0244 4.0629 32 1 -0.4851 0.8400 -0.0004 33 1 0.3556 -2.3881 0.0005 34 1 3.0468 -3.2553 -1.8708 35 1 1.5113 -4.1419 -2.0258 36 1 4.0983 -5.2536 -0.8470 37 1 3.4464 -5.6304 -2.4601 38 1 1.4002 -6.5627 -1.4157 39 1 2.8565 -7.3996 -0.8260 40 1 1.3229 -6.8578 1.0453 41 1 2.8578 -5.9703 1.1999 42 1 1.4076 -3.7911 2.4901 43 1 -2.7004 -5.0442 3.5980 44 1 -1.7723 -6.2764 4.4854 45 1 -3.2716 -5.2374 6.0725 46 1 -1.6362 -4.6292 6.4234 47 1 -3.8570 -3.1987 4.8949 48 1 -3.1181 -2.7135 6.4430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085313725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:49 Heat of formation + Delta-G solvation = 44.273356 kcal Electronic energy + Delta-G solvation = -30659.229865 eV Core-core repulsion = 26750.133292 eV Total energy + Delta-G solvation = -3909.096573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.19524 -40.06292 -38.24556 -36.59675 -34.30099 -34.05256 -33.38661 -31.24785 -30.66477 -29.92985 -29.25216 -27.76840 -24.75024 -23.80613 -22.96579 -22.67624 -21.92732 -21.17172 -20.54709 -19.74133 -19.38565 -17.94694 -17.37447 -16.86064 -16.17581 -15.95900 -15.27106 -15.03188 -14.58987 -14.22163 -14.08918 -13.87742 -13.82286 -13.69975 -13.59804 -13.22449 -13.05815 -12.78101 -12.33364 -12.21665 -12.12273 -11.45310 -11.27577 -11.16796 -11.12824 -11.06152 -10.99064 -10.96351 -10.83951 -10.68297 -10.53019 -10.41102 -10.25213 -10.09764 -9.89714 -9.74356 -9.68398 -9.01166 -8.84636 -8.63935 -7.10234 -5.85196 -3.17707 1.81045 2.62452 2.83080 3.04462 3.24040 3.38847 3.43790 3.47753 4.37316 4.42575 4.49095 4.64135 4.71881 4.89568 4.94896 5.01442 5.11763 5.17342 5.23557 5.31198 5.39795 5.44280 5.46453 5.60445 5.66664 5.70301 5.76619 5.80446 5.82804 5.86233 5.87258 5.99170 6.00831 6.10005 6.17629 6.23722 6.32902 6.35643 6.35913 6.40251 6.46878 6.67522 6.76791 6.94218 7.16072 7.55789 7.60843 8.25495 8.30208 8.80983 9.42666 9.95167 10.30708 11.34904 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.005948 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.535367 B = 4706.211368 C = 7551.661262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.261 4.261 8 H 0.069 0.931 9 N -0.724 5.724 10 C 0.171 3.829 11 H 0.051 0.949 12 C -0.132 4.132 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.139 3.861 17 H 0.086 0.914 18 N -0.713 5.713 19 C 0.517 3.483 20 O -0.530 6.530 21 C -0.029 4.029 22 H 0.113 0.887 23 C -0.096 4.096 24 C -0.117 4.117 25 C -0.033 4.033 26 C -0.011 4.011 27 N -0.272 5.272 28 N -0.050 5.050 29 N -0.357 5.357 30 H 0.452 0.548 31 C -0.029 4.029 32 H 0.259 0.741 33 H 0.383 0.617 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.392 0.608 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 -14.606 9.013 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.391 4.391 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.061 3.939 11 H 0.069 0.931 12 C -0.173 4.173 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.034 3.966 17 H 0.105 0.895 18 N -0.363 5.363 19 C 0.302 3.698 20 O -0.406 6.406 21 C -0.052 4.052 22 H 0.130 0.870 23 C -0.134 4.134 24 C -0.155 4.155 25 C -0.072 4.072 26 C -0.152 4.152 27 N -0.138 5.138 28 N -0.029 5.029 29 N -0.079 5.079 30 H 0.300 0.700 31 C -0.165 4.165 32 H 0.069 0.931 33 H 0.217 0.783 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.226 0.774 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.101 0.899 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.771 -13.350 8.525 15.859 hybrid contribution 1.107 0.267 -0.407 1.209 sum 1.878 -13.083 8.118 15.511 Atomic orbital electron populations 1.69609 1.04950 1.26207 1.55429 1.24723 0.95392 0.97533 1.02044 0.86363 0.78619 0.83978 0.77681 1.21437 1.21630 1.21216 1.19076 0.90826 0.83797 1.45430 0.91293 1.42444 1.05660 0.99452 1.88968 1.20491 0.93818 0.85765 0.93865 0.93126 1.22205 0.99990 0.95578 0.99546 1.21586 0.98503 0.95654 1.00055 1.21469 0.99965 0.98095 0.95645 1.21859 0.99954 0.97047 0.97350 1.21392 0.99312 0.94338 0.81512 0.89543 1.46072 1.25190 1.49204 1.15848 1.20356 0.80765 0.80558 0.88117 1.90696 1.50180 1.36039 1.63655 1.19973 1.01843 0.88137 0.95266 0.86976 1.21443 0.94624 0.99386 0.97942 1.21656 1.01475 0.95250 0.97165 1.19958 0.94775 0.93115 0.99378 1.21611 0.98819 0.90720 1.04010 1.74876 1.10465 1.14911 1.13499 1.78742 1.04973 1.07113 1.12091 1.44913 1.22886 1.04325 1.35750 0.69966 1.21321 0.97910 0.92183 1.05114 0.93124 0.78299 0.91501 0.92463 0.92376 0.92633 0.91943 0.92301 0.91841 0.91989 0.77391 0.89948 0.90111 0.90292 0.91375 0.89900 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.27 13.06 55.49 0.72 -25.55 16 2 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 3 Si 0.90 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.26 -6.48 9.93 -15.06 -0.15 -6.63 16 8 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 9 N -0.72 -15.87 4.95 -53.43 -0.26 -16.13 16 10 C 0.17 2.93 2.29 -67.93 -0.16 2.78 16 11 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 12 C -0.13 -2.14 5.50 -26.73 -0.15 -2.29 16 13 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 14 C -0.11 -1.35 5.92 -26.73 -0.16 -1.51 16 15 C -0.12 -1.56 5.49 -26.73 -0.15 -1.70 16 16 C 0.14 2.13 1.98 -67.93 -0.13 1.99 16 17 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 18 N -0.71 -10.17 4.47 -53.80 -0.24 -10.41 16 19 C 0.52 7.64 7.10 -10.99 -0.08 7.56 16 20 O -0.53 -9.35 15.49 5.55 0.09 -9.26 16 21 C -0.03 -0.34 2.90 -92.78 -0.27 -0.61 16 22 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 23 C -0.10 -1.01 4.67 -26.45 -0.12 -1.13 16 24 C -0.12 -1.01 5.90 -26.46 -0.16 -1.17 16 25 C -0.03 -0.37 6.30 -27.71 -0.17 -0.55 16 26 C -0.01 -0.18 7.11 -83.12 -0.59 -0.77 16 27 N -0.27 -5.27 12.40 33.16 0.41 -4.86 16 28 N -0.05 -1.03 13.40 60.35 0.81 -0.22 16 29 N -0.36 -6.28 6.77 33.39 0.23 -6.06 16 30 H 0.45 7.78 6.90 -190.08 -1.31 6.47 16 31 C -0.03 -0.44 6.38 -82.50 -0.53 -0.97 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 33 H 0.38 9.49 7.80 -40.82 -0.32 9.17 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.39 5.20 6.77 -40.82 -0.28 4.92 16 43 H 0.08 1.05 7.73 -51.93 -0.40 0.64 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 47 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -30.95 379.27 -9.21 -40.16 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -8.58 Total: 16.62 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -3.06 Total: -6.73 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: 1.67 Total: -63.23 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.95 -9.21 -40.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085313725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.430 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds