Wall clock time and date at job start Tue Mar 31 2020 18:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47145 * 239.99733 * 3 2 1 5 5 H 1.48498 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47170 * 119.99933 * 3 2 1 7 7 C 1.38814 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99700 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47021 * 34.99609 * 10 9 7 12 12 C 1.52999 * 109.47487 * 274.99944 * 10 9 7 13 13 C 1.52997 * 109.47317 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47060 * 59.99960 * 13 12 10 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 12 16 16 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 17 17 H 1.09002 * 109.47153 * 60.00231 * 16 15 14 18 18 N 1.46500 * 109.47007 * 180.02562 * 16 15 14 19 19 C 1.34772 * 120.00198 * 274.99841 * 18 16 15 20 20 O 1.21292 * 119.99872 * 0.02562 * 19 18 16 21 21 C 1.50699 * 120.00302 * 180.02562 * 19 18 16 22 22 H 1.09002 * 109.68956 * 300.54828 * 21 19 18 23 23 C 1.53436 * 109.69262 * 180.02562 * 21 19 18 24 24 C 1.53113 * 109.55600 * 190.56204 * 23 21 19 25 25 C 1.53419 * 109.57577 * 70.05443 * 24 23 21 26 26 C 1.50599 * 108.33960 * 310.17643 * 25 24 23 27 27 N 1.32910 * 129.16824 * 196.57416 * 26 25 24 28 28 N 1.29017 * 108.63496 * 179.85032 * 27 26 25 29 29 N 1.29103 * 110.26238 * 0.03159 * 28 27 26 30 30 H 0.96998 * 126.00773 * 180.02562 * 29 28 27 31 31 C 1.34403 * 107.98356 * 0.05985 * 29 28 27 32 32 H 0.96996 * 120.00649 * 0.02562 * 1 2 3 33 33 H 0.97007 * 120.00049 * 359.97438 * 9 7 2 34 34 H 1.08996 * 109.46929 * 59.99046 * 12 10 9 35 35 H 1.09002 * 109.46716 * 299.99851 * 12 10 9 36 36 H 1.09002 * 109.47153 * 299.99641 * 13 12 10 37 37 H 1.09001 * 109.46832 * 179.97438 * 13 12 10 38 38 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 39 39 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 40 40 H 1.08993 * 109.47662 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 42 42 H 0.97002 * 120.00110 * 95.00836 * 18 16 15 43 43 H 1.08996 * 109.45885 * 310.58645 * 23 21 19 44 44 H 1.08999 * 109.45577 * 70.54129 * 23 21 19 45 45 H 1.08991 * 109.45485 * 190.09030 * 24 23 21 46 46 H 1.09000 * 109.45295 * 310.04854 * 24 23 21 47 47 H 1.08998 * 109.69417 * 69.89072 * 25 24 23 48 48 H 1.09003 * 109.69028 * 190.46779 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9688 -3.5505 0.5899 12 6 2.4220 -4.0356 -1.4364 13 6 3.1876 -5.3603 -1.4363 14 6 2.3109 -6.4559 -0.8264 15 6 1.9470 -6.0771 0.6106 16 6 1.1815 -4.7524 0.6105 17 1 0.2707 -4.8592 0.0212 18 7 0.8336 -4.3894 1.9865 19 6 -0.2838 -4.8864 2.5526 20 8 -1.0013 -5.6348 1.9230 21 6 -0.6420 -4.5125 3.9679 22 1 0.1585 -4.8174 4.6421 23 6 -1.9495 -5.2070 4.3710 24 6 -2.4493 -4.6282 5.6975 25 6 -2.9370 -3.1900 5.4795 26 6 -1.8687 -2.4353 4.7330 27 7 -1.7144 -1.1234 4.5866 28 7 -0.6617 -0.9093 3.8720 29 7 -0.1125 -2.0290 3.5384 30 1 0.6895 -2.1336 3.0029 31 6 -0.8478 -3.0244 4.0629 32 1 -0.4851 0.8400 -0.0004 33 1 0.3556 -2.3881 0.0005 34 1 3.0468 -3.2553 -1.8708 35 1 1.5113 -4.1419 -2.0258 36 1 4.0983 -5.2536 -0.8470 37 1 3.4464 -5.6304 -2.4601 38 1 1.4002 -6.5627 -1.4157 39 1 2.8565 -7.3996 -0.8260 40 1 1.3229 -6.8578 1.0453 41 1 2.8578 -5.9703 1.1999 42 1 1.4076 -3.7911 2.4901 43 1 -2.7004 -5.0442 3.5980 44 1 -1.7723 -6.2764 4.4854 45 1 -3.2716 -5.2374 6.0725 46 1 -1.6362 -4.6292 6.4234 47 1 -3.8570 -3.1987 4.8949 48 1 -3.1181 -2.7135 6.4430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085313725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:48 Heat of formation + Delta-G solvation = 22.740565 kcal Electronic energy + Delta-G solvation = -30660.163597 eV Core-core repulsion = 26750.133292 eV Total energy + Delta-G solvation = -3910.030305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.50420 -41.28488 -39.47601 -37.60875 -35.83659 -35.48571 -34.64695 -33.00627 -31.73460 -31.07783 -30.44398 -29.26758 -25.88228 -25.54019 -24.29191 -23.70875 -23.16919 -22.48159 -21.76138 -20.92518 -20.45166 -19.27506 -19.06041 -18.13296 -17.43272 -17.26135 -16.67251 -16.48879 -15.76865 -15.63914 -15.33375 -15.14602 -14.89589 -14.75324 -14.64598 -14.60697 -14.43244 -14.08448 -13.58759 -13.56240 -13.13082 -12.94254 -12.81866 -12.55377 -12.37218 -12.30561 -12.20276 -12.18006 -12.08727 -12.02503 -11.94380 -11.68517 -11.58538 -11.45372 -11.31215 -11.15324 -11.01783 -10.77964 -10.07906 -9.88466 -9.01154 -7.92193 -5.20821 0.52631 1.38563 1.45379 1.45677 1.52687 1.55211 1.79208 2.08531 2.54284 3.26818 3.37317 3.42621 3.58228 3.66978 3.78044 3.82633 3.98783 4.10626 4.20083 4.24685 4.29496 4.34602 4.36924 4.42173 4.48468 4.52107 4.58276 4.67742 4.68560 4.92908 4.99417 5.01678 5.04478 5.12845 5.17242 5.21222 5.23142 5.28579 5.29852 5.36929 5.43692 5.48104 5.51022 5.55663 5.63932 5.82869 6.24689 6.38398 7.08196 7.34245 7.45075 8.06560 8.30614 9.27907 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.005948 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.535367 B = 4706.211368 C = 7551.661262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.056 4.056 3 Si 0.953 3.047 4 H -0.282 1.282 5 H -0.309 1.309 6 H -0.278 1.278 7 C -0.237 4.237 8 H 0.079 0.921 9 N -0.730 5.730 10 C 0.170 3.830 11 H 0.063 0.937 12 C -0.128 4.128 13 C -0.110 4.110 14 C -0.111 4.111 15 C -0.113 4.113 16 C 0.148 3.852 17 H 0.053 0.947 18 N -0.710 5.710 19 C 0.514 3.486 20 O -0.560 6.560 21 C -0.022 4.022 22 H 0.154 0.846 23 C -0.094 4.094 24 C -0.106 4.106 25 C -0.036 4.036 26 C -0.019 4.019 27 N -0.299 5.299 28 N -0.107 5.107 29 N -0.359 5.359 30 H 0.450 0.550 31 C -0.018 4.018 32 H 0.244 0.756 33 H 0.366 0.634 34 H 0.048 0.952 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.398 0.602 43 H 0.055 0.945 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.876 -17.677 10.590 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.250 4.250 3 Si 0.785 3.215 4 H -0.208 1.208 5 H -0.236 1.236 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.097 0.903 9 N -0.369 5.369 10 C 0.061 3.939 11 H 0.081 0.919 12 C -0.169 4.169 13 C -0.148 4.148 14 C -0.149 4.149 15 C -0.152 4.152 16 C 0.042 3.958 17 H 0.072 0.928 18 N -0.360 5.360 19 C 0.300 3.700 20 O -0.439 6.439 21 C -0.045 4.045 22 H 0.172 0.828 23 C -0.133 4.133 24 C -0.144 4.144 25 C -0.075 4.075 26 C -0.160 4.160 27 N -0.164 5.164 28 N -0.085 5.085 29 N -0.079 5.079 30 H 0.297 0.703 31 C -0.155 4.155 32 H 0.053 0.947 33 H 0.198 0.802 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.233 0.767 43 H 0.074 0.926 44 H 0.122 0.878 45 H 0.127 0.873 46 H 0.104 0.896 47 H 0.101 0.899 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.491 -16.436 10.103 19.453 hybrid contribution 0.605 1.112 -0.944 1.579 sum 3.096 -15.324 9.159 18.120 Atomic orbital electron populations 1.69771 1.06281 1.25437 1.58585 1.25290 0.95831 1.00130 1.03791 0.85523 0.77258 0.80796 0.77967 1.20848 1.23621 1.20389 1.19398 0.91228 0.84554 1.41667 0.90333 1.42561 1.04927 1.00593 1.88824 1.20714 0.94007 0.84304 0.94890 0.91904 1.22083 0.99363 0.97461 0.97970 1.21518 0.98462 0.93394 1.01462 1.21475 0.99723 0.99007 0.94683 1.21797 1.00211 0.94860 0.98349 1.21215 0.97809 0.95213 0.81531 0.92832 1.46069 1.25409 1.49098 1.15426 1.20831 0.80166 0.79949 0.89031 1.90686 1.50963 1.37608 1.64603 1.20232 1.04306 0.85825 0.94164 0.82830 1.21506 0.92883 1.00661 0.98221 1.21660 1.03097 0.93312 0.96286 1.20226 0.93391 0.94467 0.99411 1.22444 0.99802 0.89736 1.04052 1.74804 1.10486 1.17188 1.13896 1.78701 1.06579 1.08743 1.14496 1.44902 1.22880 1.04515 1.35619 0.70254 1.21888 0.96899 0.93234 1.03524 0.94726 0.80238 0.93344 0.94373 0.90844 0.91238 0.93025 0.89426 0.91824 0.89966 0.76687 0.92576 0.87844 0.87277 0.89550 0.89919 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.94 13.06 21.65 0.28 -56.65 16 2 C -0.06 -3.08 5.50 84.86 0.47 -2.61 16 3 Si 0.95 45.72 29.55 68.60 2.03 47.75 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.24 -11.84 9.93 84.03 0.83 -11.01 16 8 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.73 -32.51 4.95 -322.94 -1.60 -34.11 16 10 C 0.17 5.69 2.29 44.99 0.10 5.80 16 11 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 12 C -0.13 -4.06 5.50 30.59 0.17 -3.89 16 13 C -0.11 -2.49 5.92 30.59 0.18 -2.31 16 14 C -0.11 -2.31 5.92 30.60 0.18 -2.13 16 15 C -0.11 -2.56 5.49 30.59 0.17 -2.39 16 16 C 0.15 4.40 1.98 44.99 0.09 4.48 16 17 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 18 N -0.71 -19.58 4.47 -442.52 -1.98 -21.55 16 19 C 0.51 14.60 7.10 87.66 0.62 15.22 16 20 O -0.56 -19.47 15.49 -3.07 -0.05 -19.52 16 21 C -0.02 -0.48 2.90 -12.19 -0.04 -0.52 16 22 H 0.15 2.14 8.14 -2.39 -0.02 2.12 16 23 C -0.09 -1.73 4.67 30.78 0.14 -1.58 16 24 C -0.11 -1.42 5.90 30.77 0.18 -1.24 16 25 C -0.04 -0.73 6.30 29.96 0.19 -0.55 16 26 C -0.02 -0.59 7.11 41.75 0.30 -0.29 16 27 N -0.30 -11.93 12.40 -48.99 -0.61 -12.54 16 28 N -0.11 -4.61 13.40 37.02 0.50 -4.11 16 29 N -0.36 -12.88 6.77 -48.27 -0.33 -13.21 16 30 H 0.45 15.85 6.90 -219.68 -1.52 14.34 16 31 C -0.02 -0.55 6.38 41.50 0.26 -0.28 16 32 H 0.24 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.37 18.86 7.80 -92.70 -0.72 18.13 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.40 10.10 6.77 -92.71 -0.63 9.47 16 43 H 0.06 1.35 7.73 -2.39 -0.02 1.33 16 44 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.09 0.92 8.12 -2.39 -0.02 0.90 16 47 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -71.64 379.27 0.23 -71.41 By element: Atomic # 1 Polarization: 47.68 SS G_CDS: -1.87 Total: 45.82 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 3.85 Total: -3.29 kcal Atomic # 7 Polarization: -138.44 SS G_CDS: -3.73 Total: -142.17 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -71.64 0.23 -71.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085313725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.150 kcal (2) G-P(sol) polarization free energy of solvation -71.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds