Wall clock time and date at job start Tue Mar 31 2020 18:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99608 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00215 * 3 2 1 7 7 C 1.38811 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99849 * 179.97438 * 9 7 2 11 11 H 1.09007 * 109.46786 * 35.00337 * 10 9 7 12 12 C 1.53002 * 109.47505 * 275.00534 * 10 9 7 13 13 C 1.53000 * 109.47085 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47104 * 60.00111 * 13 12 10 15 15 C 1.52998 * 109.47053 * 299.99529 * 14 13 12 16 16 C 1.53000 * 109.47154 * 60.00238 * 15 14 13 17 17 H 1.08997 * 109.47338 * 60.00159 * 16 15 14 18 18 N 1.46499 * 109.47441 * 180.02562 * 16 15 14 19 19 C 1.34782 * 119.99593 * 275.00206 * 18 16 15 20 20 O 1.21277 * 119.99996 * 359.97438 * 19 18 16 21 21 C 1.50707 * 119.99571 * 179.97438 * 19 18 16 22 22 H 1.08996 * 109.45604 * 59.97000 * 21 19 18 23 23 C 1.53106 * 109.45271 * 179.91532 * 21 19 18 24 24 C 1.53419 * 109.57876 * 190.08855 * 23 21 19 25 25 C 1.50596 * 108.33708 * 310.19489 * 24 23 21 26 26 N 1.32909 * 129.16065 * 196.60557 * 25 24 23 27 27 N 1.29027 * 108.63466 * 179.76984 * 26 25 24 28 28 N 1.29104 * 110.25898 * 0.02562 * 27 26 25 29 29 H 0.96999 * 126.01200 * 180.02562 * 28 27 26 30 30 C 1.34397 * 107.98499 * 0.06604 * 28 27 26 31 31 C 1.50541 * 129.25831 * 179.84862 * 30 28 27 32 32 H 0.97000 * 119.99517 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00534 * 0.02562 * 9 7 2 34 34 H 1.08997 * 109.46559 * 300.00057 * 12 10 9 35 35 H 1.09005 * 109.47082 * 59.99292 * 12 10 9 36 36 H 1.09002 * 109.46726 * 179.97438 * 13 12 10 37 37 H 1.08995 * 109.46824 * 299.99421 * 13 12 10 38 38 H 1.08990 * 109.47430 * 59.99738 * 14 13 12 39 39 H 1.08998 * 109.47125 * 179.97438 * 14 13 12 40 40 H 1.08997 * 109.47450 * 180.02562 * 15 14 13 41 41 H 1.09007 * 109.47248 * 300.00457 * 15 14 13 42 42 H 0.96996 * 120.00670 * 95.00031 * 18 16 15 43 43 H 1.08998 * 109.45817 * 310.12463 * 23 21 19 44 44 H 1.09002 * 109.45244 * 70.06159 * 23 21 19 45 45 H 1.08998 * 109.69437 * 190.47791 * 24 23 21 46 46 H 1.09007 * 109.72053 * 69.91827 * 24 23 21 47 47 H 1.09008 * 109.69057 * 76.71677 * 31 30 28 48 48 H 1.09001 * 109.72317 * 316.15559 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 1 2.9693 -3.5502 0.5904 12 6 2.4211 -4.0362 -1.4355 13 6 3.1867 -5.3609 -1.4353 14 6 2.3104 -6.4563 -0.8244 15 6 1.9476 -6.0768 0.6127 16 6 1.1820 -4.7521 0.6126 17 1 0.2708 -4.8591 0.0240 18 7 0.8351 -4.3885 1.9887 19 6 -0.2821 -4.8854 2.5557 20 8 -1.0003 -5.6333 1.9266 21 6 -0.6387 -4.5118 3.9715 22 1 -0.7657 -3.4315 4.0409 23 6 -1.9450 -5.2050 4.3682 24 6 -2.4433 -4.6372 5.7035 25 6 -1.3006 -4.6601 6.6841 26 7 -1.3290 -4.5534 8.0086 27 7 -0.1205 -4.6291 8.4543 28 7 0.7081 -4.7814 7.4759 29 1 1.6715 -4.8640 7.5521 30 6 0.0011 -4.8046 6.3332 31 6 0.4858 -4.9560 4.9160 32 1 -0.4849 -0.8401 0.0004 33 1 0.3557 -2.3881 0.0016 34 1 1.5100 -4.1427 -2.0242 35 1 3.0457 -3.2560 -1.8706 36 1 3.4448 -5.6314 -2.4592 37 1 4.0978 -5.2538 -0.8467 38 1 1.3993 -6.5632 -1.4130 39 1 2.8556 -7.4001 -0.8247 40 1 1.3237 -6.8574 1.0481 41 1 2.8587 -5.9698 1.2013 42 1 1.4093 -3.7901 2.4917 43 1 -2.6961 -5.0325 3.5974 44 1 -1.7707 -6.2760 4.4717 45 1 -3.2628 -5.2494 6.0800 46 1 -2.7856 -3.6119 5.5624 47 1 0.7369 -5.9991 4.7232 48 1 1.3653 -4.3315 4.7593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085392543.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:46 Heat of formation + Delta-G solvation = 39.991777 kcal Electronic energy + Delta-G solvation = -29542.917760 eV Core-core repulsion = 25633.635524 eV Total energy + Delta-G solvation = -3909.282236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.65099 -40.16765 -38.33681 -36.54805 -34.39661 -34.18149 -33.85176 -31.22217 -30.80847 -30.46964 -29.16173 -27.49636 -24.93539 -23.65879 -23.55289 -23.02027 -22.06212 -21.33517 -20.46084 -19.89719 -19.29199 -18.39270 -17.37337 -17.04378 -16.37810 -16.21690 -15.60578 -15.01896 -14.51738 -14.29351 -14.14798 -14.02821 -13.87031 -13.71182 -13.63653 -13.61481 -13.49755 -12.80639 -12.47422 -12.26945 -12.19505 -12.05658 -11.74421 -11.37210 -11.22556 -11.08466 -11.02809 -10.94425 -10.77872 -10.74951 -10.52622 -10.50281 -10.33689 -10.10369 -9.95506 -9.59769 -9.27091 -9.10406 -8.98721 -8.72948 -7.12540 -6.17312 -3.18898 1.30904 2.31906 2.40733 2.80338 3.31560 3.45455 3.51496 3.60471 3.98499 4.27561 4.48901 4.55560 4.56922 4.73039 4.87768 4.92911 5.00827 5.04961 5.10742 5.20242 5.21343 5.35998 5.41145 5.46952 5.50330 5.58658 5.61243 5.66750 5.73663 5.81079 5.81468 5.85134 5.92051 5.99053 6.02862 6.15396 6.18011 6.32324 6.33587 6.36212 6.42330 6.58625 6.71838 6.75808 6.93672 7.72139 7.74399 8.23338 8.40252 8.67707 9.13086 9.99787 10.14699 11.30358 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009465 B = 0.003727 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.683837 B = 7510.614181 C = 9316.275203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.041 4.041 3 Si 1.082 2.918 4 H -0.295 1.295 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.334 4.334 8 H 0.065 0.935 9 N -0.733 5.733 10 C 0.179 3.821 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.122 4.122 16 C 0.139 3.861 17 H 0.083 0.917 18 N -0.707 5.707 19 C 0.521 3.479 20 O -0.543 6.543 21 C -0.104 4.104 22 H 0.108 0.892 23 C -0.098 4.098 24 C -0.036 4.036 25 C -0.013 4.013 26 N -0.258 5.258 27 N -0.092 5.092 28 N -0.382 5.382 29 H 0.448 0.552 30 C -0.010 4.010 31 C -0.036 4.036 32 H 0.256 0.744 33 H 0.367 0.633 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.402 0.598 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.152 -13.750 8.167 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.239 4.239 3 Si 0.913 3.087 4 H -0.222 1.222 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.375 5.375 10 C 0.069 3.931 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.033 3.967 17 H 0.101 0.899 18 N -0.356 5.356 19 C 0.306 3.694 20 O -0.420 6.420 21 C -0.126 4.126 22 H 0.126 0.874 23 C -0.137 4.137 24 C -0.075 4.075 25 C -0.152 4.152 26 N -0.124 5.124 27 N -0.071 5.071 28 N -0.101 5.101 29 H 0.293 0.707 30 C -0.145 4.145 31 C -0.076 4.076 32 H 0.068 0.932 33 H 0.201 0.799 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.237 0.763 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.110 0.890 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.420 -12.427 9.299 15.893 hybrid contribution 1.165 -1.380 -0.846 1.995 sum 4.585 -13.806 8.453 16.825 Atomic orbital electron populations 1.70818 1.06068 1.28584 1.53138 1.25705 0.97004 1.00880 1.00347 0.83193 0.73531 0.75252 0.76677 1.22179 1.22012 1.22073 1.20047 0.91910 0.85635 1.48874 0.91748 1.42425 1.04797 1.00468 1.89813 1.20387 0.93800 0.85280 0.93653 0.93161 1.22207 0.99935 0.95637 0.99628 1.21576 0.98502 0.95584 1.00077 1.21471 0.99950 0.98059 0.95743 1.21855 0.99908 0.97150 0.97239 1.21328 0.99028 0.94105 0.82206 0.89871 1.45969 1.25256 1.49045 1.15377 1.20279 0.80748 0.80275 0.88094 1.90684 1.50512 1.36449 1.64379 1.21367 0.96133 1.03490 0.91582 0.87367 1.21456 0.95847 1.00147 0.96207 1.20047 0.93571 1.03033 0.90816 1.21804 0.94679 1.06717 0.92046 1.74828 1.12062 1.15962 1.09571 1.78564 0.94467 1.20563 1.13471 1.44675 1.11828 1.48818 1.04777 0.70651 1.21788 0.92739 1.09078 0.90917 1.20121 0.98313 1.03368 0.85808 0.93231 0.79920 0.92597 0.91577 0.92598 0.92376 0.91961 0.92311 0.91893 0.92090 0.76321 0.89167 0.90870 0.89270 0.89403 0.88975 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.88 13.70 55.49 0.76 -27.12 16 2 C -0.04 -1.13 5.50 -17.43 -0.10 -1.22 16 3 Si 1.08 24.91 29.92 -169.99 -5.09 19.83 16 4 H -0.30 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.33 -8.62 9.93 -15.06 -0.15 -8.77 16 8 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 9 N -0.73 -16.57 4.95 -53.42 -0.26 -16.83 16 10 C 0.18 3.16 2.29 -67.93 -0.16 3.00 16 11 H 0.05 0.90 8.08 -51.92 -0.42 0.48 16 12 C -0.13 -2.20 5.50 -26.73 -0.15 -2.35 16 13 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 14 C -0.11 -1.36 5.92 -26.73 -0.16 -1.52 16 15 C -0.12 -1.55 5.49 -26.73 -0.15 -1.69 16 16 C 0.14 2.12 1.98 -67.93 -0.13 1.98 16 17 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 18 N -0.71 -9.83 4.81 -53.80 -0.26 -10.09 16 19 C 0.52 7.25 7.10 -10.98 -0.08 7.17 16 20 O -0.54 -9.30 15.47 5.56 0.09 -9.21 16 21 C -0.10 -1.12 2.50 -91.49 -0.23 -1.35 16 22 H 0.11 1.22 8.12 -51.93 -0.42 0.80 16 23 C -0.10 -1.03 4.64 -26.46 -0.12 -1.15 16 24 C -0.04 -0.36 6.30 -27.72 -0.17 -0.53 16 25 C -0.01 -0.15 7.11 -83.12 -0.59 -0.74 16 26 N -0.26 -3.61 12.40 33.16 0.41 -3.20 16 27 N -0.09 -1.16 13.40 60.35 0.81 -0.35 16 28 N -0.38 -3.50 6.97 33.39 0.23 -3.27 16 29 H 0.45 2.27 8.96 -190.08 -1.70 0.57 16 30 C -0.01 -0.10 7.15 -82.49 -0.59 -0.69 16 31 C -0.04 -0.31 5.43 -27.74 -0.15 -0.46 16 32 H 0.26 7.54 6.77 -40.82 -0.28 7.26 16 33 H 0.37 8.96 6.63 -40.82 -0.27 8.69 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 42 H 0.40 5.27 8.27 -40.82 -0.34 4.93 16 43 H 0.09 1.03 7.76 -51.93 -0.40 0.62 16 44 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 0.71 8.12 -51.92 -0.42 0.29 16 48 H 0.09 0.62 7.90 -51.93 -0.41 0.21 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -33.23 381.26 -9.56 -42.79 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -8.91 Total: 11.73 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -3.08 Total: -10.02 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 1.69 Total: -60.87 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.09 Total: 19.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.23 -9.56 -42.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085392543.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.786 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds