Wall clock time and date at job start Tue Mar 31 2020 18:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99608 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00215 * 3 2 1 7 7 C 1.38811 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99849 * 179.97438 * 9 7 2 11 11 H 1.09007 * 109.46786 * 35.00337 * 10 9 7 12 12 C 1.53002 * 109.47505 * 275.00534 * 10 9 7 13 13 C 1.53000 * 109.47085 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47104 * 60.00111 * 13 12 10 15 15 C 1.52998 * 109.47053 * 299.99529 * 14 13 12 16 16 C 1.53000 * 109.47154 * 60.00238 * 15 14 13 17 17 H 1.08997 * 109.47338 * 60.00159 * 16 15 14 18 18 N 1.46499 * 109.47441 * 180.02562 * 16 15 14 19 19 C 1.34782 * 119.99593 * 275.00206 * 18 16 15 20 20 O 1.21277 * 119.99996 * 359.97438 * 19 18 16 21 21 C 1.50707 * 119.99571 * 179.97438 * 19 18 16 22 22 H 1.08996 * 109.45604 * 59.97000 * 21 19 18 23 23 C 1.53106 * 109.45271 * 179.91532 * 21 19 18 24 24 C 1.53419 * 109.57876 * 190.08855 * 23 21 19 25 25 C 1.50596 * 108.33708 * 310.19489 * 24 23 21 26 26 N 1.32909 * 129.16065 * 196.60557 * 25 24 23 27 27 N 1.29027 * 108.63466 * 179.76984 * 26 25 24 28 28 N 1.29104 * 110.25898 * 0.02562 * 27 26 25 29 29 H 0.96999 * 126.01200 * 180.02562 * 28 27 26 30 30 C 1.34397 * 107.98499 * 0.06604 * 28 27 26 31 31 C 1.50541 * 129.25831 * 179.84862 * 30 28 27 32 32 H 0.97000 * 119.99517 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00534 * 0.02562 * 9 7 2 34 34 H 1.08997 * 109.46559 * 300.00057 * 12 10 9 35 35 H 1.09005 * 109.47082 * 59.99292 * 12 10 9 36 36 H 1.09002 * 109.46726 * 179.97438 * 13 12 10 37 37 H 1.08995 * 109.46824 * 299.99421 * 13 12 10 38 38 H 1.08990 * 109.47430 * 59.99738 * 14 13 12 39 39 H 1.08998 * 109.47125 * 179.97438 * 14 13 12 40 40 H 1.08997 * 109.47450 * 180.02562 * 15 14 13 41 41 H 1.09007 * 109.47248 * 300.00457 * 15 14 13 42 42 H 0.96996 * 120.00670 * 95.00031 * 18 16 15 43 43 H 1.08998 * 109.45817 * 310.12463 * 23 21 19 44 44 H 1.09002 * 109.45244 * 70.06159 * 23 21 19 45 45 H 1.08998 * 109.69437 * 190.47791 * 24 23 21 46 46 H 1.09007 * 109.72053 * 69.91827 * 24 23 21 47 47 H 1.09008 * 109.69057 * 76.71677 * 31 30 28 48 48 H 1.09001 * 109.72317 * 316.15559 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 1 2.9693 -3.5502 0.5904 12 6 2.4211 -4.0362 -1.4355 13 6 3.1867 -5.3609 -1.4353 14 6 2.3104 -6.4563 -0.8244 15 6 1.9476 -6.0768 0.6127 16 6 1.1820 -4.7521 0.6126 17 1 0.2708 -4.8591 0.0240 18 7 0.8351 -4.3885 1.9887 19 6 -0.2821 -4.8854 2.5557 20 8 -1.0003 -5.6333 1.9266 21 6 -0.6387 -4.5118 3.9715 22 1 -0.7657 -3.4315 4.0409 23 6 -1.9450 -5.2050 4.3682 24 6 -2.4433 -4.6372 5.7035 25 6 -1.3006 -4.6601 6.6841 26 7 -1.3290 -4.5534 8.0086 27 7 -0.1205 -4.6291 8.4543 28 7 0.7081 -4.7814 7.4759 29 1 1.6715 -4.8640 7.5521 30 6 0.0011 -4.8046 6.3332 31 6 0.4858 -4.9560 4.9160 32 1 -0.4849 -0.8401 0.0004 33 1 0.3557 -2.3881 0.0016 34 1 1.5100 -4.1427 -2.0242 35 1 3.0457 -3.2560 -1.8706 36 1 3.4448 -5.6314 -2.4592 37 1 4.0978 -5.2538 -0.8467 38 1 1.3993 -6.5632 -1.4130 39 1 2.8556 -7.4001 -0.8247 40 1 1.3237 -6.8574 1.0481 41 1 2.8587 -5.9698 1.2013 42 1 1.4093 -3.7901 2.4917 43 1 -2.6961 -5.0325 3.5974 44 1 -1.7707 -6.2760 4.4717 45 1 -3.2628 -5.2494 6.0800 46 1 -2.7856 -3.6119 5.5624 47 1 0.7369 -5.9991 4.7232 48 1 1.3653 -4.3315 4.7593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085392543.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:45 Heat of formation + Delta-G solvation = 16.747908 kcal Electronic energy + Delta-G solvation = -29543.925690 eV Core-core repulsion = 25633.635524 eV Total energy + Delta-G solvation = -3910.290166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.50696 -41.32346 -39.54393 -37.53014 -36.13830 -35.22899 -34.86815 -32.92677 -31.77401 -31.30892 -30.32701 -28.99991 -25.87245 -25.51719 -24.47433 -23.89424 -23.20871 -22.64122 -21.55652 -20.99653 -20.33324 -19.32498 -19.18311 -18.15228 -17.48488 -17.29540 -16.62912 -16.35597 -16.02048 -15.51161 -15.27219 -15.17311 -14.99949 -14.95746 -14.81371 -14.67470 -14.44012 -14.03647 -13.69507 -13.53628 -13.16384 -13.05951 -12.75845 -12.68487 -12.63633 -12.25905 -12.22060 -12.11278 -12.09586 -11.89421 -11.77441 -11.62889 -11.56661 -11.36939 -11.35231 -11.06650 -10.96743 -10.67403 -9.95656 -9.93921 -9.07177 -8.32069 -5.27041 0.48787 1.40713 1.56109 1.60252 1.70211 1.80978 1.82409 2.22494 2.72713 3.16922 3.42595 3.46220 3.60670 3.63742 3.71605 3.77799 3.92393 3.97160 4.10372 4.20871 4.23627 4.25096 4.34130 4.39527 4.44658 4.46108 4.53733 4.56655 4.66364 4.74785 4.80749 4.92042 4.96191 4.98446 5.08044 5.14220 5.18963 5.20736 5.26084 5.27663 5.31074 5.43011 5.52113 5.65195 5.67694 5.95300 6.53666 6.60500 7.12526 7.27757 7.35360 8.02695 8.16347 9.18814 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009465 B = 0.003727 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.683837 B = 7510.614181 C = 9316.275203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.102 4.102 3 Si 1.126 2.874 4 H -0.269 1.269 5 H -0.299 1.299 6 H -0.295 1.295 7 C -0.317 4.317 8 H 0.069 0.931 9 N -0.743 5.743 10 C 0.178 3.822 11 H 0.058 0.942 12 C -0.129 4.129 13 C -0.109 4.109 14 C -0.112 4.112 15 C -0.113 4.113 16 C 0.147 3.853 17 H 0.052 0.948 18 N -0.704 5.704 19 C 0.521 3.479 20 O -0.577 6.577 21 C -0.097 4.097 22 H 0.104 0.896 23 C -0.091 4.091 24 C -0.030 4.030 25 C -0.032 4.032 26 N -0.292 5.292 27 N -0.114 5.114 28 N -0.361 5.361 29 H 0.466 0.534 30 C 0.002 3.998 31 C -0.028 4.028 32 H 0.242 0.758 33 H 0.355 0.645 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.408 0.592 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.109 0.891 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 -15.044 8.604 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.293 4.293 3 Si 0.952 3.048 4 H -0.194 1.194 5 H -0.227 1.227 6 H -0.222 1.222 7 C -0.449 4.449 8 H 0.087 0.913 9 N -0.384 5.384 10 C 0.070 3.930 11 H 0.076 0.924 12 C -0.170 4.170 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.152 4.152 16 C 0.041 3.959 17 H 0.070 0.930 18 N -0.353 5.353 19 C 0.308 3.692 20 O -0.456 6.456 21 C -0.119 4.119 22 H 0.122 0.878 23 C -0.130 4.130 24 C -0.069 4.069 25 C -0.172 4.172 26 N -0.158 5.158 27 N -0.093 5.093 28 N -0.083 5.083 29 H 0.315 0.685 30 C -0.135 4.135 31 C -0.067 4.067 32 H 0.053 0.947 33 H 0.186 0.814 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.244 0.756 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.106 0.894 47 H 0.127 0.873 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.183 -13.765 9.760 17.971 hybrid contribution 0.364 -1.042 -1.052 1.525 sum 6.547 -14.806 8.707 18.383 Atomic orbital electron populations 1.70940 1.07325 1.27798 1.56613 1.26931 0.96975 1.04304 1.01134 0.82618 0.73978 0.72061 0.76100 1.19396 1.22694 1.22189 1.20342 0.92184 0.86635 1.45704 0.91273 1.42607 1.04338 1.01586 1.89838 1.20599 0.93863 0.83948 0.94628 0.92439 1.22093 0.99347 0.97497 0.98081 1.21509 0.98435 0.93289 1.01523 1.21480 0.99713 0.98946 0.94835 1.21790 1.00192 0.94982 0.98199 1.21135 0.97513 0.94817 0.82389 0.93022 1.45944 1.25499 1.49066 1.14810 1.20734 0.79991 0.79447 0.88989 1.90672 1.51410 1.38098 1.65469 1.21307 0.97269 1.03220 0.90128 0.87774 1.21373 0.95409 1.00257 0.95951 1.20017 0.93513 1.03197 0.90197 1.22113 0.95994 1.07345 0.91759 1.74788 1.12949 1.17304 1.10725 1.78489 0.94642 1.21747 1.14406 1.44661 1.12589 1.47176 1.03905 0.68464 1.21905 0.92168 1.07820 0.91567 1.20140 0.97823 1.04821 0.83910 0.94698 0.81358 0.94356 0.93662 0.91139 0.90907 0.93011 0.89416 0.91914 0.90009 0.75616 0.90464 0.90610 0.88492 0.89400 0.87295 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.26 13.70 21.65 0.30 -58.97 16 2 C -0.10 -5.60 5.50 84.86 0.47 -5.13 16 3 Si 1.13 49.97 29.92 68.60 2.05 52.03 16 4 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 7 C -0.32 -16.28 9.93 84.03 0.83 -15.44 16 8 H 0.07 3.45 7.83 -2.91 -0.02 3.43 16 9 N -0.74 -33.80 4.95 -322.93 -1.60 -35.40 16 10 C 0.18 6.11 2.29 44.99 0.10 6.22 16 11 H 0.06 1.92 8.08 -2.38 -0.02 1.90 16 12 C -0.13 -4.18 5.50 30.59 0.17 -4.01 16 13 C -0.11 -2.50 5.92 30.59 0.18 -2.32 16 14 C -0.11 -2.34 5.92 30.59 0.18 -2.15 16 15 C -0.11 -2.54 5.49 30.59 0.17 -2.37 16 16 C 0.15 4.36 1.98 44.99 0.09 4.45 16 17 H 0.05 1.88 7.58 -2.39 -0.02 1.86 16 18 N -0.70 -18.77 4.81 -442.53 -2.13 -20.90 16 19 C 0.52 14.14 7.10 87.66 0.62 14.77 16 20 O -0.58 -19.77 15.47 -3.02 -0.05 -19.81 16 21 C -0.10 -2.00 2.50 -11.36 -0.03 -2.02 16 22 H 0.10 2.27 8.12 -2.39 -0.02 2.25 16 23 C -0.09 -1.87 4.64 30.77 0.14 -1.73 16 24 C -0.03 -0.60 6.30 29.96 0.19 -0.41 16 25 C -0.03 -0.72 7.11 41.75 0.30 -0.43 16 26 N -0.29 -8.05 12.40 -48.99 -0.61 -8.66 16 27 N -0.11 -2.78 13.40 37.02 0.50 -2.29 16 28 N -0.36 -5.89 6.97 -48.26 -0.34 -6.22 16 29 H 0.47 3.48 8.96 -219.68 -1.97 1.51 16 30 C 0.00 0.04 7.15 41.50 0.30 0.34 16 31 C -0.03 -0.39 5.43 29.94 0.16 -0.23 16 32 H 0.24 14.81 6.77 -92.71 -0.63 14.18 16 33 H 0.35 17.87 6.63 -92.71 -0.61 17.26 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.41 9.94 8.27 -92.71 -0.77 9.17 16 43 H 0.08 1.79 7.76 -2.39 -0.02 1.77 16 44 H 0.08 1.51 8.12 -2.39 -0.02 1.49 16 45 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.11 1.28 8.12 -2.38 -0.02 1.26 16 48 H 0.11 1.14 7.90 -2.39 -0.02 1.12 16 Total: -1.00 -73.53 381.26 -0.21 -73.74 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: -2.21 Total: 36.94 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 3.87 Total: -10.47 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -3.88 Total: -132.43 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.05 Total: 52.03 kcal Total: -73.53 -0.21 -73.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085392543.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.488 kcal (2) G-P(sol) polarization free energy of solvation -73.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds