Wall clock time and date at job start Tue Mar 31 2020 18:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00204 * 2 1 4 4 H 1.48500 * 109.47298 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46805 * 299.99784 * 3 2 1 6 6 H 1.48498 * 109.47320 * 59.99510 * 3 2 1 7 7 C 1.38814 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00428 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00083 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.01780 * 33.60688 * 10 9 7 12 12 C 1.54268 * 110.03403 * 272.16371 * 10 9 7 13 13 C 1.54887 * 104.19666 * 264.32820 * 12 10 9 14 14 C 1.54885 * 102.74614 * 322.05496 * 13 12 10 15 15 H 1.08998 * 110.60263 * 279.20593 * 14 13 12 16 16 C 1.53005 * 110.48820 * 156.62146 * 14 13 12 17 17 N 1.46505 * 109.46904 * 70.22427 * 16 14 13 18 18 C 1.34773 * 120.00095 * 180.02562 * 17 16 14 19 19 O 1.21603 * 119.99887 * 359.97438 * 18 17 16 20 20 C 1.47521 * 120.00175 * 179.72702 * 18 17 16 21 21 C 1.36601 * 125.77047 * 180.27419 * 20 18 17 22 22 N 1.34814 * 106.83441 * 179.97438 * 21 20 18 23 23 C 1.46502 * 126.59016 * 180.02562 * 22 21 20 24 24 C 1.53788 * 113.61437 * 12.49523 * 23 22 21 25 25 C 1.53782 * 87.07871 * 220.02073 * 24 23 22 26 26 C 1.53777 * 87.08254 * 25.43209 * 25 24 23 27 27 N 1.40209 * 106.81464 * 359.97438 * 22 21 20 28 28 N 1.28760 * 108.36603 * 359.72482 * 27 22 21 29 29 C 1.53877 * 110.03212 * 154.99804 * 10 9 7 30 30 H 0.96997 * 120.00099 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99395 * 359.97438 * 9 7 2 32 32 H 1.09004 * 110.48088 * 23.00744 * 12 10 9 33 33 H 1.09003 * 110.48519 * 145.51612 * 12 10 9 34 34 H 1.08999 * 110.75114 * 203.74290 * 13 12 10 35 35 H 1.08992 * 110.75972 * 80.37172 * 13 12 10 36 36 H 1.09003 * 109.46946 * 310.23186 * 16 14 13 37 37 H 1.08993 * 109.47679 * 190.22729 * 16 14 13 38 38 H 0.97000 * 119.99792 * 0.02562 * 17 16 14 39 39 H 1.07994 * 126.57746 * 0.02562 * 21 20 18 40 40 H 1.09001 * 112.85204 * 143.80213 * 23 22 21 41 41 H 1.08993 * 113.61344 * 334.57090 * 24 23 22 42 42 H 1.08994 * 113.61133 * 105.47470 * 24 23 22 43 43 H 1.09000 * 113.61704 * 270.88224 * 25 24 23 44 44 H 1.09005 * 113.68447 * 139.99436 * 25 24 23 45 45 H 1.09001 * 113.61432 * 220.01100 * 26 25 24 46 46 H 1.09007 * 113.61396 * 89.11690 * 26 25 24 47 47 H 1.09000 * 110.03023 * 359.97438 * 29 10 9 48 48 H 1.09000 * 110.03119 * 238.57427 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9832 -3.5534 0.5674 12 6 2.3697 -4.0871 -1.4478 13 6 1.2214 -5.0614 -1.8100 14 6 0.9997 -5.8353 -0.4868 15 1 1.7391 -6.6287 -0.3780 16 6 -0.4159 -6.4138 -0.4355 17 7 -0.5328 -7.5052 -1.4058 18 6 -1.6991 -8.1676 -1.5377 19 8 -2.6543 -7.8596 -0.8509 20 6 -1.8187 -9.2626 -2.5190 21 6 -2.9407 -10.0057 -2.7534 22 7 -2.6269 -10.8925 -3.7192 23 6 -3.5160 -11.9010 -4.3011 24 6 -4.9965 -11.7011 -3.9363 25 6 -5.0848 -13.2291 -3.7873 26 6 -3.5753 -13.2089 -3.4944 27 7 -1.2864 -10.6631 -4.0605 28 7 -0.8444 -9.6927 -3.3387 29 6 1.1869 -4.7684 0.6116 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.3611 -3.2233 -2.1125 33 1 3.3330 -4.5949 -1.4959 34 1 1.5268 -5.7389 -2.6073 35 1 0.3230 -4.5121 -2.0914 36 1 -1.1365 -5.6329 -0.6785 37 1 -0.6167 -6.7948 0.5658 38 1 0.2292 -7.7511 -1.9533 39 1 -3.8958 -9.9021 -2.2603 40 1 -3.3440 -12.0527 -5.3667 41 1 -5.1468 -11.1617 -3.0012 42 1 -5.5984 -11.3068 -4.7550 43 1 -5.3431 -13.7440 -4.7126 44 1 -5.6897 -13.5522 -2.9400 45 1 -3.0298 -14.0320 -3.9562 46 1 -3.3370 -13.0818 -2.4383 47 1 0.2193 -4.3638 0.9085 48 1 1.6898 -5.2050 1.4745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086698300.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:57 Heat of formation + Delta-G solvation = 81.666219 kcal Electronic energy + Delta-G solvation = -27567.148267 eV Core-core repulsion = 23659.673170 eV Total energy + Delta-G solvation = -3907.475097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.59238 -39.73765 -39.22640 -37.99358 -34.88713 -33.59932 -33.12381 -31.36869 -30.52004 -28.90518 -27.36973 -26.62258 -26.51502 -24.69462 -23.26961 -22.90758 -22.72309 -20.69495 -20.20885 -19.87069 -19.15921 -18.48841 -17.06154 -16.75100 -16.61330 -16.18428 -16.01372 -15.28945 -15.07104 -14.87621 -14.60658 -14.25838 -13.84021 -13.53435 -13.45478 -13.29972 -13.18323 -13.09033 -12.65393 -12.56678 -12.36457 -12.12194 -11.59975 -11.51034 -11.35751 -11.22347 -11.13659 -10.77633 -10.70702 -10.59963 -10.51610 -10.41560 -10.23238 -10.15577 -10.07803 -9.83122 -9.58444 -9.57375 -8.98635 -8.83261 -6.87654 -5.71330 -2.99194 0.82086 1.50406 1.63811 3.08464 3.20173 3.42614 3.46589 3.52293 3.54475 3.62797 3.92481 3.93407 3.97123 4.38893 4.53002 4.63936 4.70785 4.79751 4.85872 4.95465 4.98279 5.04494 5.08893 5.15520 5.18544 5.19618 5.43215 5.56335 5.60621 5.66818 5.79421 5.82936 5.99574 6.03408 6.08928 6.16837 6.21144 6.29486 6.43352 6.45924 6.55351 6.73200 6.84602 6.98731 7.17724 7.40535 7.71617 7.76896 8.13661 8.48170 9.58736 10.19060 10.52965 11.51451 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028738 B = 0.001777 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.088294 B =15756.139360 C =16041.196387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.113 4.113 14 C -0.103 4.103 15 H 0.076 0.924 16 C 0.126 3.874 17 N -0.709 5.709 18 C 0.601 3.399 19 O -0.541 6.541 20 C -0.099 4.099 21 C 0.092 3.908 22 N -0.351 5.351 23 C 0.121 3.879 24 C -0.147 4.147 25 C -0.136 4.136 26 C -0.145 4.145 27 N -0.066 5.066 28 N -0.205 5.205 29 C -0.121 4.121 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.408 0.592 39 H 0.202 0.798 40 H 0.134 0.866 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.365 -30.376 -8.201 32.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.151 4.151 14 C -0.122 4.122 15 H 0.094 0.906 16 C 0.003 3.997 17 N -0.359 5.359 18 C 0.385 3.615 19 O -0.417 6.417 20 C -0.238 4.238 21 C -0.065 4.065 22 N -0.135 5.135 23 C 0.019 3.981 24 C -0.186 4.186 25 C -0.174 4.174 26 C -0.184 4.184 27 N -0.045 5.045 28 N -0.079 5.079 29 C -0.160 4.160 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.243 0.757 39 H 0.219 0.781 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.091 0.909 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.748 -30.425 -8.588 32.801 hybrid contribution -0.366 1.044 0.150 1.117 sum -9.114 -29.380 -8.438 31.898 Atomic orbital electron populations 1.69669 1.05072 1.25431 1.57964 1.24734 0.95491 0.97630 1.03252 0.86146 0.78790 0.84329 0.77116 1.20600 1.21990 1.21959 1.19319 0.91050 0.84247 1.42195 0.91168 1.42555 1.05670 0.99717 1.88248 1.20807 0.94118 0.86063 0.92651 0.93389 1.23114 0.96092 0.98632 1.00814 1.22501 0.99928 0.97408 0.95248 1.22240 0.94614 0.97829 0.97567 0.90608 1.21602 0.97848 0.88396 0.91804 1.45834 1.13488 1.35234 1.41321 1.16746 0.83341 0.80258 0.81186 1.90824 1.37985 1.66967 1.45951 1.21524 0.91753 1.05195 1.05340 1.23242 1.01287 0.90329 0.91627 1.50574 1.11282 1.25180 1.26503 1.23467 0.88027 0.86741 0.99832 1.23482 0.92900 0.98370 1.03844 1.22717 0.95973 0.95203 1.03463 1.23448 0.97458 0.96180 1.01275 1.81990 0.88916 1.13701 1.19918 1.74642 1.25361 1.04670 1.03201 1.22462 1.01450 0.95403 0.96644 0.93636 0.78265 0.91012 0.93310 0.92805 0.91310 0.90675 0.91347 0.75703 0.78099 0.84785 0.88465 0.89200 0.88947 0.89671 0.89567 0.88964 0.90873 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.90 22.67 29.55 -169.99 -5.02 17.64 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.24 -6.62 9.96 -15.05 -0.15 -6.77 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -18.08 5.08 -52.34 -0.27 -18.34 16 10 C 0.17 3.44 3.55 -66.81 -0.24 3.21 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.15 -2.59 6.54 -25.07 -0.16 -2.76 16 13 C -0.11 -1.73 6.19 -24.74 -0.15 -1.88 16 14 C -0.10 -1.42 2.89 -88.96 -0.26 -1.67 16 15 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.13 1.73 4.96 -4.04 -0.02 1.71 16 17 N -0.71 -9.07 5.44 -61.35 -0.33 -9.40 16 18 C 0.60 8.29 7.82 -12.48 -0.10 8.19 16 19 O -0.54 -8.83 16.86 5.27 0.09 -8.74 16 20 C -0.10 -1.18 6.99 -83.55 -0.58 -1.77 16 21 C 0.09 0.83 10.49 -16.83 -0.18 0.65 16 22 N -0.35 -2.90 3.83 -53.77 -0.21 -3.11 16 23 C 0.12 0.53 5.06 -67.11 -0.34 0.19 16 24 C -0.15 -0.38 7.44 -25.91 -0.19 -0.57 16 25 C -0.14 -0.23 8.08 -25.92 -0.21 -0.43 16 26 C -0.15 -0.47 7.88 -25.92 -0.20 -0.68 16 27 N -0.07 -0.76 13.78 60.35 0.83 0.08 16 28 N -0.21 -2.58 12.04 32.85 0.40 -2.19 16 29 C -0.12 -1.96 6.14 -25.61 -0.16 -2.12 16 30 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.38 10.26 7.52 -40.82 -0.31 9.95 16 32 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.18 7.96 -51.93 -0.41 0.76 16 36 H 0.07 1.16 8.02 -51.93 -0.42 0.74 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.41 4.72 8.13 -40.82 -0.33 4.38 16 39 H 0.20 1.26 6.78 -52.49 -0.36 0.90 16 40 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.25 6.39 -51.93 -0.33 -0.08 16 42 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 44 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 45 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 1.29 7.31 -51.93 -0.38 0.91 16 48 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 394.37 15.07 5.94 5.94 Total: -1.00 -34.15 394.37 -8.45 -42.61 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.57 Total: 8.52 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -3.04 Total: -5.22 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 1.15 Total: -60.75 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.15 -8.45 -42.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086698300.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.272 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds