Wall clock time and date at job start Tue Mar 31 2020 18:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00204 * 2 1 4 4 H 1.48500 * 109.47298 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46805 * 299.99784 * 3 2 1 6 6 H 1.48498 * 109.47320 * 59.99510 * 3 2 1 7 7 C 1.38814 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00428 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00083 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.01780 * 33.60688 * 10 9 7 12 12 C 1.54268 * 110.03403 * 272.16371 * 10 9 7 13 13 C 1.54887 * 104.19666 * 264.32820 * 12 10 9 14 14 C 1.54885 * 102.74614 * 322.05496 * 13 12 10 15 15 H 1.08998 * 110.60263 * 279.20593 * 14 13 12 16 16 C 1.53005 * 110.48820 * 156.62146 * 14 13 12 17 17 N 1.46505 * 109.46904 * 70.22427 * 16 14 13 18 18 C 1.34773 * 120.00095 * 180.02562 * 17 16 14 19 19 O 1.21603 * 119.99887 * 359.97438 * 18 17 16 20 20 C 1.47521 * 120.00175 * 179.72702 * 18 17 16 21 21 C 1.36601 * 125.77047 * 180.27419 * 20 18 17 22 22 N 1.34814 * 106.83441 * 179.97438 * 21 20 18 23 23 C 1.46502 * 126.59016 * 180.02562 * 22 21 20 24 24 C 1.53788 * 113.61437 * 12.49523 * 23 22 21 25 25 C 1.53782 * 87.07871 * 220.02073 * 24 23 22 26 26 C 1.53777 * 87.08254 * 25.43209 * 25 24 23 27 27 N 1.40209 * 106.81464 * 359.97438 * 22 21 20 28 28 N 1.28760 * 108.36603 * 359.72482 * 27 22 21 29 29 C 1.53877 * 110.03212 * 154.99804 * 10 9 7 30 30 H 0.96997 * 120.00099 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99395 * 359.97438 * 9 7 2 32 32 H 1.09004 * 110.48088 * 23.00744 * 12 10 9 33 33 H 1.09003 * 110.48519 * 145.51612 * 12 10 9 34 34 H 1.08999 * 110.75114 * 203.74290 * 13 12 10 35 35 H 1.08992 * 110.75972 * 80.37172 * 13 12 10 36 36 H 1.09003 * 109.46946 * 310.23186 * 16 14 13 37 37 H 1.08993 * 109.47679 * 190.22729 * 16 14 13 38 38 H 0.97000 * 119.99792 * 0.02562 * 17 16 14 39 39 H 1.07994 * 126.57746 * 0.02562 * 21 20 18 40 40 H 1.09001 * 112.85204 * 143.80213 * 23 22 21 41 41 H 1.08993 * 113.61344 * 334.57090 * 24 23 22 42 42 H 1.08994 * 113.61133 * 105.47470 * 24 23 22 43 43 H 1.09000 * 113.61704 * 270.88224 * 25 24 23 44 44 H 1.09005 * 113.68447 * 139.99436 * 25 24 23 45 45 H 1.09001 * 113.61432 * 220.01100 * 26 25 24 46 46 H 1.09007 * 113.61396 * 89.11690 * 26 25 24 47 47 H 1.09000 * 110.03023 * 359.97438 * 29 10 9 48 48 H 1.09000 * 110.03119 * 238.57427 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9832 -3.5534 0.5674 12 6 2.3697 -4.0871 -1.4478 13 6 1.2214 -5.0614 -1.8100 14 6 0.9997 -5.8353 -0.4868 15 1 1.7391 -6.6287 -0.3780 16 6 -0.4159 -6.4138 -0.4355 17 7 -0.5328 -7.5052 -1.4058 18 6 -1.6991 -8.1676 -1.5377 19 8 -2.6543 -7.8596 -0.8509 20 6 -1.8187 -9.2626 -2.5190 21 6 -2.9407 -10.0057 -2.7534 22 7 -2.6269 -10.8925 -3.7192 23 6 -3.5160 -11.9010 -4.3011 24 6 -4.9965 -11.7011 -3.9363 25 6 -5.0848 -13.2291 -3.7873 26 6 -3.5753 -13.2089 -3.4944 27 7 -1.2864 -10.6631 -4.0605 28 7 -0.8444 -9.6927 -3.3387 29 6 1.1869 -4.7684 0.6116 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.3611 -3.2233 -2.1125 33 1 3.3330 -4.5949 -1.4959 34 1 1.5268 -5.7389 -2.6073 35 1 0.3230 -4.5121 -2.0914 36 1 -1.1365 -5.6329 -0.6785 37 1 -0.6167 -6.7948 0.5658 38 1 0.2292 -7.7511 -1.9533 39 1 -3.8958 -9.9021 -2.2603 40 1 -3.3440 -12.0527 -5.3667 41 1 -5.1468 -11.1617 -3.0012 42 1 -5.5984 -11.3068 -4.7550 43 1 -5.3431 -13.7440 -4.7126 44 1 -5.6897 -13.5522 -2.9400 45 1 -3.0298 -14.0320 -3.9562 46 1 -3.3370 -13.0818 -2.4383 47 1 0.2193 -4.3638 0.9085 48 1 1.6898 -5.2050 1.4745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086698300.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:56 Heat of formation + Delta-G solvation = 58.110646 kcal Electronic energy + Delta-G solvation = -27568.169713 eV Core-core repulsion = 23659.673170 eV Total energy + Delta-G solvation = -3908.496543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.34832 -40.68362 -39.75053 -39.33808 -36.30155 -34.99652 -34.13626 -32.60626 -31.98904 -30.23608 -28.85586 -27.16288 -26.82120 -25.97326 -25.07775 -23.97015 -23.32729 -21.69644 -21.08228 -20.70418 -20.50648 -19.35284 -19.05296 -17.56074 -17.34444 -17.18656 -16.66192 -16.57047 -16.35400 -15.88108 -15.70830 -15.69748 -15.13386 -14.93918 -14.45345 -14.19688 -14.16594 -13.76809 -13.52672 -13.50636 -13.25469 -13.12075 -12.97054 -12.92643 -12.48336 -12.33710 -12.10037 -12.07984 -11.95397 -11.85137 -11.70011 -11.61382 -11.50705 -11.47869 -11.41105 -11.21276 -11.14459 -10.88998 -10.45126 -10.04337 -8.94215 -7.91635 -5.18795 0.09373 0.57570 1.03854 1.47357 1.47960 1.58013 2.09547 2.20571 2.58135 3.05416 3.15035 3.37598 3.40367 3.60766 3.69312 3.74324 3.75484 3.82241 3.86351 3.89983 4.14549 4.22513 4.41817 4.46344 4.56572 4.59051 4.62002 4.67048 4.71126 4.75717 4.81506 4.87483 4.89890 4.93771 4.96442 5.05856 5.10491 5.16242 5.24677 5.27224 5.34183 5.46295 5.50151 5.52717 5.60590 5.67942 6.32185 6.40131 6.87007 7.10793 7.36729 8.17187 8.38154 9.32308 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028738 B = 0.001777 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.088294 B =15756.139360 C =16041.196387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.734 5.734 10 C 0.162 3.838 11 H 0.045 0.955 12 C -0.139 4.139 13 C -0.107 4.107 14 C -0.085 4.085 15 H 0.107 0.893 16 C 0.134 3.866 17 N -0.702 5.702 18 C 0.601 3.399 19 O -0.572 6.572 20 C -0.122 4.122 21 C 0.106 3.894 22 N -0.336 5.336 23 C 0.104 3.896 24 C -0.144 4.144 25 C -0.124 4.124 26 C -0.145 4.145 27 N -0.088 5.088 28 N -0.223 5.223 29 C -0.114 4.114 30 H 0.249 0.751 31 H 0.370 0.630 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.042 0.958 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.415 0.585 39 H 0.228 0.772 40 H 0.146 0.854 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.091 -32.746 -8.722 35.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.224 1.224 6 H -0.222 1.222 7 C -0.367 4.367 8 H 0.093 0.907 9 N -0.374 5.374 10 C 0.053 3.947 11 H 0.064 0.936 12 C -0.179 4.179 13 C -0.145 4.145 14 C -0.104 4.104 15 H 0.125 0.875 16 C 0.010 3.990 17 N -0.352 5.352 18 C 0.386 3.614 19 O -0.451 6.451 20 C -0.262 4.262 21 C -0.052 4.052 22 N -0.120 5.120 23 C 0.004 3.996 24 C -0.182 4.182 25 C -0.162 4.162 26 C -0.183 4.183 27 N -0.068 5.068 28 N -0.096 5.096 29 C -0.153 4.153 30 H 0.058 0.942 31 H 0.202 0.798 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.252 0.748 39 H 0.245 0.755 40 H 0.163 0.837 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.101 0.899 47 H 0.072 0.928 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.410 -32.862 -9.142 35.132 hybrid contribution -0.468 1.643 0.276 1.730 sum -8.878 -31.220 -8.866 33.646 Atomic orbital electron populations 1.69830 1.06608 1.25744 1.60106 1.25537 0.96343 1.01020 1.04311 0.85105 0.78304 0.80093 0.76488 1.18971 1.22376 1.22183 1.19705 0.91449 0.85437 1.40099 0.90667 1.42765 1.05254 1.00977 1.88361 1.21135 0.94154 0.85114 0.94268 0.93643 1.22960 0.98455 0.98207 0.98308 1.22435 0.97879 0.97216 0.96952 1.22112 0.95362 0.97554 0.95363 0.87517 1.21413 0.97200 0.88106 0.92247 1.45736 1.13697 1.34683 1.41078 1.16969 0.82960 0.80393 0.81045 1.90800 1.38922 1.68054 1.47316 1.21415 0.93000 1.05842 1.05956 1.23619 1.01401 0.89202 0.91014 1.50876 1.10565 1.24983 1.25624 1.24054 0.88476 0.86494 1.00589 1.23537 0.91228 0.99211 1.04252 1.22710 0.94556 0.94516 1.04388 1.23457 0.98937 0.95473 1.00461 1.81903 0.90654 1.13842 1.20399 1.74599 1.26079 1.05263 1.03644 1.22362 0.99954 0.94933 0.98083 0.94234 0.79754 0.94322 0.90514 0.90153 0.93872 0.93012 0.90908 0.74789 0.75529 0.83689 0.88348 0.88178 0.87559 0.89029 0.89126 0.89943 0.92754 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.06 13.06 21.65 0.28 -60.78 16 2 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 3 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 7 C -0.23 -13.27 9.96 84.03 0.84 -12.44 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.73 -37.57 5.08 -319.52 -1.62 -39.19 16 10 C 0.16 6.33 3.55 45.72 0.16 6.49 16 11 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 12 C -0.14 -4.81 6.54 31.67 0.21 -4.60 16 13 C -0.11 -3.15 6.19 31.88 0.20 -2.95 16 14 C -0.09 -2.17 2.89 -9.72 -0.03 -2.20 16 15 H 0.11 2.17 8.14 -2.39 -0.02 2.16 16 16 C 0.13 3.57 4.96 86.38 0.43 3.99 16 17 N -0.70 -17.33 5.44 -466.26 -2.54 -19.87 16 18 C 0.60 16.36 7.82 86.69 0.68 17.04 16 19 O -0.57 -18.66 16.86 -4.04 -0.07 -18.72 16 20 C -0.12 -2.85 6.99 40.82 0.29 -2.56 16 21 C 0.11 1.77 10.49 83.85 0.88 2.65 16 22 N -0.34 -5.11 3.83 -324.03 -1.24 -6.35 16 23 C 0.10 0.72 5.06 45.52 0.23 0.95 16 24 C -0.14 -0.38 7.44 31.12 0.23 -0.15 16 25 C -0.12 -0.08 8.08 31.12 0.25 0.17 16 26 C -0.14 -0.67 7.88 31.12 0.25 -0.42 16 27 N -0.09 -1.97 13.78 37.02 0.51 -1.46 16 28 N -0.22 -5.47 12.04 -49.99 -0.60 -6.07 16 29 C -0.11 -3.60 6.14 31.32 0.19 -3.41 16 30 H 0.25 15.18 8.31 -92.71 -0.77 14.40 16 31 H 0.37 20.60 7.52 -92.71 -0.70 19.90 16 32 H 0.04 1.58 8.04 -2.39 -0.02 1.57 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.49 7.96 -2.39 -0.02 1.47 16 36 H 0.05 1.64 8.02 -2.39 -0.02 1.62 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.42 8.97 8.13 -92.71 -0.75 8.22 16 39 H 0.23 2.41 6.78 -2.91 -0.02 2.39 16 40 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.10 0.26 6.39 -2.39 -0.02 0.24 16 42 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.09 0.01 8.14 -2.38 -0.02 -0.01 16 45 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 47 H 0.05 1.93 7.31 -2.39 -0.02 1.92 16 48 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -75.74 394.37 1.55 -74.19 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: -0.47 Total: 30.65 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 5.26 Total: -1.68 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -5.21 Total: -133.72 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.07 Total: -18.72 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -75.74 1.55 -74.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086698300.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.301 kcal (2) G-P(sol) polarization free energy of solvation -75.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds