Wall clock time and date at job start Tue Mar 31 2020 17:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00230 * 2 1 4 4 H 1.48497 * 109.46712 * 270.00085 * 3 2 1 5 5 H 1.48504 * 109.46768 * 29.99479 * 3 2 1 6 6 H 1.48496 * 109.47297 * 149.99764 * 3 2 1 7 7 C 1.38815 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00363 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99476 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99584 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.67487 * 36.78333 * 10 9 7 12 12 C 1.54894 * 110.75606 * 273.54461 * 10 9 7 13 13 C 1.54261 * 104.19525 * 203.56045 * 12 10 9 14 14 C 1.53878 * 106.60098 * 23.61085 * 13 12 10 15 15 H 1.09000 * 110.03573 * 240.66423 * 14 13 12 16 16 C 1.53004 * 110.03126 * 119.28475 * 14 13 12 17 17 N 1.46499 * 109.47198 * 66.45578 * 16 14 13 18 18 C 1.34777 * 119.99665 * 180.27868 * 17 16 14 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 16 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 16 21 21 H 1.09004 * 109.68841 * 299.99005 * 20 18 17 22 22 C 1.53441 * 109.69274 * 179.45432 * 20 18 17 23 23 C 1.53118 * 109.55134 * 190.60958 * 22 20 18 24 24 C 1.53422 * 109.62265 * 69.98556 * 23 22 20 25 25 C 1.50598 * 108.33461 * 310.19220 * 24 23 22 26 26 N 1.32910 * 129.16390 * 196.55815 * 25 24 23 27 27 N 1.29018 * 108.63490 * 179.88370 * 26 25 24 28 28 N 1.29103 * 110.26352 * 0.02562 * 27 26 25 29 29 H 0.96993 * 126.01295 * 180.02562 * 28 27 26 30 30 C 1.34405 * 107.98501 * 0.05472 * 28 27 26 31 31 C 1.54263 * 106.59534 * 0.02562 * 14 13 12 32 32 H 0.97002 * 120.00011 * 0.02562 * 1 2 3 33 33 H 0.96993 * 120.00192 * 0.02562 * 9 7 2 34 34 H 1.09004 * 110.48374 * 84.88570 * 12 10 9 35 35 H 1.09000 * 110.48699 * 322.24026 * 12 10 9 36 36 H 1.09004 * 110.03268 * 264.32685 * 13 12 10 37 37 H 1.09001 * 110.03220 * 142.90086 * 13 12 10 38 38 H 1.09009 * 109.46730 * 306.45365 * 16 14 13 39 39 H 1.08998 * 109.46846 * 186.45909 * 16 14 13 40 40 H 0.97001 * 119.99790 * 359.97438 * 17 16 14 41 41 H 1.09002 * 109.45055 * 310.59082 * 22 20 18 42 42 H 1.08993 * 109.45963 * 70.53557 * 22 20 18 43 43 H 1.09005 * 109.42345 * 309.95009 * 23 22 20 44 44 H 1.08995 * 109.44590 * 190.03941 * 23 22 20 45 45 H 1.08990 * 109.69490 * 190.47936 * 24 23 22 46 46 H 1.09007 * 109.68573 * 69.89682 * 24 23 22 47 47 H 1.09001 * 110.48957 * 95.06988 * 31 14 13 48 48 H 1.09005 * 110.48517 * 217.70816 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6567 0.0027 11 1 2.9579 -3.5811 0.6133 12 6 2.4102 -4.0886 -1.4425 13 6 2.5944 -5.6172 -1.3463 14 6 1.7971 -6.0794 -0.1140 15 1 2.4654 -6.5462 0.6096 16 6 0.7082 -7.0683 -0.5350 17 7 1.3308 -8.2979 -1.0318 18 6 0.5607 -9.3151 -1.4663 19 8 -0.6477 -9.2144 -1.4412 20 6 1.2012 -10.5775 -1.9831 21 1 1.8331 -10.3444 -2.8401 22 6 0.1133 -11.5762 -2.3995 23 6 0.7490 -12.9424 -2.6717 24 6 1.2258 -13.5611 -1.3512 25 6 2.0420 -12.5326 -0.6137 26 7 2.8859 -12.6998 0.3995 27 7 3.3719 -11.5499 0.7253 28 7 2.8822 -10.6265 -0.0326 29 1 3.0910 -9.6805 0.0137 30 6 2.0316 -11.2065 -0.8966 31 6 1.1557 -4.8156 0.4952 32 1 -0.4850 0.8401 -0.0004 33 1 0.3556 -2.3881 0.0016 34 1 3.3351 -3.6127 -1.7683 35 1 1.5943 -3.8448 -2.1230 36 1 3.6498 -5.8588 -1.2203 37 1 2.2057 -6.0974 -2.2443 38 1 0.0998 -6.6248 -1.3234 39 1 0.0776 -7.3013 0.3230 40 1 2.2972 -8.3781 -1.0522 41 1 -0.6190 -11.6704 -1.5976 42 1 -0.3814 -11.2188 -3.3025 43 1 1.5991 -12.8194 -3.3427 44 1 0.0130 -13.5991 -3.1354 45 1 1.8393 -14.4382 -1.5569 46 1 0.3644 -13.8479 -0.7479 47 1 0.1373 -4.6896 0.1276 48 1 1.1653 -4.8699 1.5838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086788367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:26 Heat of formation + Delta-G solvation = 46.439432 kcal Electronic energy + Delta-G solvation = -28501.116562 eV Core-core repulsion = 24592.113916 eV Total energy + Delta-G solvation = -3909.002645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.97649 -40.39024 -38.44136 -37.19274 -35.26666 -34.38421 -33.43667 -31.33025 -30.65542 -30.57569 -29.12472 -27.44360 -25.48689 -24.31798 -23.53293 -23.17394 -22.90113 -21.39127 -20.09949 -19.86128 -19.50923 -18.69229 -17.56989 -17.14691 -16.69942 -16.45303 -16.02590 -15.52300 -15.04932 -14.98989 -14.40063 -14.32823 -14.21893 -14.04281 -13.87209 -13.37661 -13.00043 -12.89715 -12.69091 -12.33002 -12.08613 -11.95671 -11.84829 -11.76602 -11.53880 -11.25129 -11.13401 -10.98284 -10.85402 -10.81641 -10.74636 -10.64580 -10.43704 -10.31753 -10.22192 -9.91772 -9.71691 -9.47684 -9.33914 -8.92900 -7.00100 -5.81321 -3.10377 1.01248 1.98112 2.09496 2.25599 2.68615 3.39826 3.45059 3.46838 3.72623 3.84835 4.09168 4.21764 4.37467 4.52514 4.59045 4.68455 4.73350 4.76339 4.78986 4.89239 4.91572 5.07296 5.35589 5.38991 5.41043 5.44236 5.52457 5.54934 5.55749 5.58568 5.74795 5.77347 5.80577 5.83036 5.84935 5.90382 6.01983 6.16178 6.20647 6.27996 6.34177 6.46589 6.58720 6.77017 6.94869 7.02569 7.65792 7.70013 7.98892 8.37414 9.48394 10.06388 10.40309 11.41216 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028096 B = 0.002044 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.343534 B =13694.587528 C =14210.595094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.053 0.947 12 C -0.143 4.143 13 C -0.122 4.122 14 C -0.102 4.102 15 H 0.072 0.928 16 C 0.124 3.876 17 N -0.732 5.732 18 C 0.513 3.487 19 O -0.517 6.517 20 C -0.032 4.032 21 H 0.120 0.880 22 C -0.098 4.098 23 C -0.120 4.120 24 C -0.037 4.037 25 C -0.003 4.003 26 N -0.256 5.256 27 N -0.077 5.077 28 N -0.380 5.380 29 H 0.444 0.556 30 C -0.014 4.014 31 C -0.121 4.121 32 H 0.256 0.744 33 H 0.384 0.616 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.389 0.611 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.071 0.929 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 -27.367 -6.208 28.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.067 3.933 11 H 0.071 0.929 12 C -0.184 4.184 13 C -0.160 4.160 14 C -0.122 4.122 15 H 0.091 0.909 16 C 0.001 3.999 17 N -0.384 5.384 18 C 0.298 3.702 19 O -0.392 6.392 20 C -0.055 4.055 21 H 0.138 0.862 22 C -0.137 4.137 23 C -0.158 4.158 24 C -0.076 4.076 25 C -0.142 4.142 26 N -0.122 5.122 27 N -0.056 5.056 28 N -0.101 5.101 29 H 0.291 0.709 30 C -0.150 4.150 31 C -0.160 4.160 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.223 0.777 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.089 0.911 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.992 -27.561 -4.942 28.284 hybrid contribution 0.272 2.024 -0.816 2.199 sum 4.264 -25.538 -5.758 26.524 Atomic orbital electron populations 1.69657 1.05112 1.25725 1.57536 1.24759 0.95526 0.97750 1.02937 0.86198 0.78656 0.83862 0.77519 1.21718 1.21751 1.20765 1.19231 0.90977 0.84119 1.42840 0.91205 1.42374 1.05753 0.99748 1.88198 1.21151 0.93874 0.85610 0.92705 0.92938 1.23076 1.01414 0.92443 1.01487 1.22237 0.98871 0.98315 0.96606 1.21994 0.96350 0.95877 0.97960 0.90943 1.21687 0.95771 0.82786 0.99634 1.46246 1.09453 1.16972 1.65747 1.20390 0.87724 0.84242 0.77858 1.90761 1.13711 1.81258 1.53425 1.20082 0.96865 0.93606 0.94988 0.86196 1.21493 0.95894 0.92775 1.03520 1.21685 1.01264 0.96153 0.96661 1.20052 0.97890 0.95041 0.94611 1.21757 1.01186 0.93357 0.97943 1.74882 1.09755 1.15396 1.12165 1.78634 1.19796 0.91666 1.15531 1.44849 1.29750 1.12163 1.23296 0.70907 1.21452 0.99974 0.94491 0.99055 1.22572 1.00182 0.93307 0.99950 0.93460 0.78180 0.92506 0.91728 0.92420 0.92350 0.90525 0.91132 0.77691 0.89845 0.89512 0.91121 0.89775 0.89354 0.89470 0.91067 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.50 5.26 -51.48 -0.27 -17.77 16 10 C 0.18 3.28 3.53 -65.92 -0.23 3.04 16 11 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 12 C -0.14 -2.32 6.51 -25.07 -0.16 -2.48 16 13 C -0.12 -1.38 6.13 -25.61 -0.16 -1.54 16 14 C -0.10 -1.10 2.98 -89.50 -0.27 -1.37 16 15 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 16 C 0.12 1.29 4.70 -4.04 -0.02 1.27 16 17 N -0.73 -5.87 4.86 -60.29 -0.29 -6.17 16 18 C 0.51 4.84 7.14 -10.99 -0.08 4.76 16 19 O -0.52 -6.95 15.83 5.55 0.09 -6.86 16 20 C -0.03 -0.21 2.90 -92.78 -0.27 -0.48 16 21 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 22 C -0.10 -0.59 4.67 -26.44 -0.12 -0.72 16 23 C -0.12 -0.50 5.89 -26.45 -0.16 -0.66 16 24 C -0.04 -0.22 6.31 -27.71 -0.17 -0.39 16 25 C 0.00 -0.02 7.11 -83.12 -0.59 -0.61 16 26 N -0.26 -2.98 12.40 33.17 0.41 -2.57 16 27 N -0.08 -0.86 13.40 60.35 0.81 -0.05 16 28 N -0.38 -3.04 6.76 33.39 0.23 -2.81 16 29 H 0.44 2.36 6.86 -190.08 -1.30 1.05 16 30 C -0.01 -0.11 6.38 -82.50 -0.53 -0.64 16 31 C -0.12 -1.78 5.97 -25.06 -0.15 -1.93 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 33 H 0.38 9.96 7.73 -40.82 -0.32 9.65 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.61 7.58 -51.93 -0.39 0.22 16 38 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.39 2.08 6.41 -40.82 -0.26 1.82 16 41 H 0.08 0.64 7.74 -51.93 -0.40 0.24 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 44 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 47 H 0.07 1.11 7.74 -51.93 -0.40 0.71 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -34.20 382.28 -9.26 -43.46 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.54 Total: 5.94 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -3.15 Total: -8.91 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 1.61 Total: -56.48 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: 0.09 Total: -6.86 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.20 -9.26 -43.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086788367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.901 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds