Wall clock time and date at job start Tue Mar 31 2020 17:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00230 * 2 1 4 4 H 1.48497 * 109.46712 * 270.00085 * 3 2 1 5 5 H 1.48504 * 109.46768 * 29.99479 * 3 2 1 6 6 H 1.48496 * 109.47297 * 149.99764 * 3 2 1 7 7 C 1.38815 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00363 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99476 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99584 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.67487 * 36.78333 * 10 9 7 12 12 C 1.54894 * 110.75606 * 273.54461 * 10 9 7 13 13 C 1.54261 * 104.19525 * 203.56045 * 12 10 9 14 14 C 1.53878 * 106.60098 * 23.61085 * 13 12 10 15 15 H 1.09000 * 110.03573 * 240.66423 * 14 13 12 16 16 C 1.53004 * 110.03126 * 119.28475 * 14 13 12 17 17 N 1.46499 * 109.47198 * 66.45578 * 16 14 13 18 18 C 1.34777 * 119.99665 * 180.27868 * 17 16 14 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 16 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 16 21 21 H 1.09004 * 109.68841 * 299.99005 * 20 18 17 22 22 C 1.53441 * 109.69274 * 179.45432 * 20 18 17 23 23 C 1.53118 * 109.55134 * 190.60958 * 22 20 18 24 24 C 1.53422 * 109.62265 * 69.98556 * 23 22 20 25 25 C 1.50598 * 108.33461 * 310.19220 * 24 23 22 26 26 N 1.32910 * 129.16390 * 196.55815 * 25 24 23 27 27 N 1.29018 * 108.63490 * 179.88370 * 26 25 24 28 28 N 1.29103 * 110.26352 * 0.02562 * 27 26 25 29 29 H 0.96993 * 126.01295 * 180.02562 * 28 27 26 30 30 C 1.34405 * 107.98501 * 0.05472 * 28 27 26 31 31 C 1.54263 * 106.59534 * 0.02562 * 14 13 12 32 32 H 0.97002 * 120.00011 * 0.02562 * 1 2 3 33 33 H 0.96993 * 120.00192 * 0.02562 * 9 7 2 34 34 H 1.09004 * 110.48374 * 84.88570 * 12 10 9 35 35 H 1.09000 * 110.48699 * 322.24026 * 12 10 9 36 36 H 1.09004 * 110.03268 * 264.32685 * 13 12 10 37 37 H 1.09001 * 110.03220 * 142.90086 * 13 12 10 38 38 H 1.09009 * 109.46730 * 306.45365 * 16 14 13 39 39 H 1.08998 * 109.46846 * 186.45909 * 16 14 13 40 40 H 0.97001 * 119.99790 * 359.97438 * 17 16 14 41 41 H 1.09002 * 109.45055 * 310.59082 * 22 20 18 42 42 H 1.08993 * 109.45963 * 70.53557 * 22 20 18 43 43 H 1.09005 * 109.42345 * 309.95009 * 23 22 20 44 44 H 1.08995 * 109.44590 * 190.03941 * 23 22 20 45 45 H 1.08990 * 109.69490 * 190.47936 * 24 23 22 46 46 H 1.09007 * 109.68573 * 69.89682 * 24 23 22 47 47 H 1.09001 * 110.48957 * 95.06988 * 31 14 13 48 48 H 1.09005 * 110.48517 * 217.70816 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6567 0.0027 11 1 2.9579 -3.5811 0.6133 12 6 2.4102 -4.0886 -1.4425 13 6 2.5944 -5.6172 -1.3463 14 6 1.7971 -6.0794 -0.1140 15 1 2.4654 -6.5462 0.6096 16 6 0.7082 -7.0683 -0.5350 17 7 1.3308 -8.2979 -1.0318 18 6 0.5607 -9.3151 -1.4663 19 8 -0.6477 -9.2144 -1.4412 20 6 1.2012 -10.5775 -1.9831 21 1 1.8331 -10.3444 -2.8401 22 6 0.1133 -11.5762 -2.3995 23 6 0.7490 -12.9424 -2.6717 24 6 1.2258 -13.5611 -1.3512 25 6 2.0420 -12.5326 -0.6137 26 7 2.8859 -12.6998 0.3995 27 7 3.3719 -11.5499 0.7253 28 7 2.8822 -10.6265 -0.0326 29 1 3.0910 -9.6805 0.0137 30 6 2.0316 -11.2065 -0.8966 31 6 1.1557 -4.8156 0.4952 32 1 -0.4850 0.8401 -0.0004 33 1 0.3556 -2.3881 0.0016 34 1 3.3351 -3.6127 -1.7683 35 1 1.5943 -3.8448 -2.1230 36 1 3.6498 -5.8588 -1.2203 37 1 2.2057 -6.0974 -2.2443 38 1 0.0998 -6.6248 -1.3234 39 1 0.0776 -7.3013 0.3230 40 1 2.2972 -8.3781 -1.0522 41 1 -0.6190 -11.6704 -1.5976 42 1 -0.3814 -11.2188 -3.3025 43 1 1.5991 -12.8194 -3.3427 44 1 0.0130 -13.5991 -3.1354 45 1 1.8393 -14.4382 -1.5569 46 1 0.3644 -13.8479 -0.7479 47 1 0.1373 -4.6896 0.1276 48 1 1.1653 -4.8699 1.5838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086788367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:25 Heat of formation + Delta-G solvation = 21.949669 kcal Electronic energy + Delta-G solvation = -28502.178517 eV Core-core repulsion = 24592.113916 eV Total energy + Delta-G solvation = -3910.064601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.63928 -41.17488 -39.56627 -37.77779 -36.43006 -35.36601 -34.75899 -32.66141 -31.67604 -31.17030 -30.23082 -28.83251 -26.41903 -25.35209 -24.82109 -24.12598 -23.54156 -22.18289 -21.20439 -20.69828 -20.50004 -19.41117 -19.10940 -18.20667 -17.41650 -17.35972 -16.83908 -16.66270 -16.46437 -15.66408 -15.61764 -15.29387 -14.92003 -14.90621 -14.81184 -14.54569 -14.31788 -13.94569 -13.62831 -13.38799 -13.17326 -12.96888 -12.73029 -12.69388 -12.45502 -12.36809 -12.25640 -12.15852 -12.03564 -11.98814 -11.82709 -11.69758 -11.66177 -11.55291 -11.38295 -11.28320 -11.02690 -10.90851 -10.28221 -9.98310 -8.99452 -7.95617 -5.23671 0.36354 1.28478 1.42449 1.45693 1.47066 1.55430 1.63509 1.98055 2.55072 3.16579 3.27323 3.36674 3.50955 3.62103 3.70266 3.75431 3.78247 3.91139 4.17249 4.25966 4.27977 4.32471 4.35201 4.44324 4.45560 4.57914 4.59616 4.61144 4.75083 4.76029 4.86269 4.97513 4.99128 5.06303 5.09084 5.11944 5.15406 5.19429 5.22799 5.32888 5.41510 5.46049 5.48465 5.51509 5.62774 5.74182 6.27274 6.28354 7.00264 7.29599 7.32584 8.11492 8.32342 9.28032 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028096 B = 0.002044 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.343534 B =13694.587528 C =14210.595094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.737 5.737 10 C 0.163 3.837 11 H 0.051 0.949 12 C -0.139 4.139 13 C -0.109 4.109 14 C -0.086 4.086 15 H 0.103 0.897 16 C 0.132 3.868 17 N -0.718 5.718 18 C 0.513 3.487 19 O -0.561 6.561 20 C -0.022 4.022 21 H 0.155 0.845 22 C -0.100 4.100 23 C -0.110 4.110 24 C -0.039 4.039 25 C -0.013 4.013 26 N -0.290 5.290 27 N -0.106 5.106 28 N -0.368 5.368 29 H 0.455 0.545 30 C -0.007 4.007 31 C -0.116 4.116 32 H 0.250 0.750 33 H 0.371 0.629 34 H 0.049 0.951 35 H 0.039 0.961 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.406 0.594 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.055 0.945 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.714 -29.127 -7.359 30.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.376 5.376 10 C 0.054 3.946 11 H 0.069 0.931 12 C -0.180 4.180 13 C -0.147 4.147 14 C -0.106 4.106 15 H 0.122 0.878 16 C 0.008 3.992 17 N -0.372 5.372 18 C 0.299 3.701 19 O -0.438 6.438 20 C -0.045 4.045 21 H 0.173 0.827 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.078 4.078 25 C -0.154 4.154 26 N -0.155 5.155 27 N -0.085 5.085 28 N -0.090 5.090 29 H 0.304 0.696 30 C -0.144 4.144 31 C -0.155 4.155 32 H 0.059 0.941 33 H 0.203 0.797 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.243 0.757 41 H 0.080 0.920 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.105 0.895 47 H 0.074 0.926 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.975 -29.363 -6.084 30.576 hybrid contribution -0.325 2.530 -0.453 2.591 sum 5.650 -26.833 -6.537 28.190 Atomic orbital electron populations 1.69818 1.06629 1.25946 1.59835 1.25571 0.96376 1.01145 1.04118 0.85167 0.77755 0.79660 0.77372 1.21520 1.22419 1.19312 1.19626 0.91405 0.85302 1.40519 0.90614 1.42613 1.05378 1.01185 1.88417 1.21485 0.94087 0.84565 0.94446 0.93056 1.22893 0.99976 0.96274 0.98817 1.22174 1.00938 0.94221 0.97375 1.21865 0.96384 0.94094 0.98215 0.87839 1.21410 0.95445 0.83515 0.98795 1.46054 1.10302 1.15870 1.64944 1.20896 0.87229 0.85009 0.77004 1.90755 1.15751 1.82137 1.55182 1.20174 0.97045 0.91954 0.95318 0.82723 1.21523 0.95446 0.93776 1.03053 1.21663 1.02067 0.95120 0.95892 1.20216 0.97600 0.94851 0.95164 1.22320 1.00897 0.94683 0.97481 1.74848 1.11063 1.16024 1.13536 1.78572 1.21026 0.92168 1.16711 1.44838 1.29113 1.12452 1.22596 0.69606 1.21642 0.99499 0.94279 0.98937 1.22469 0.98918 0.93823 1.00312 0.94137 0.79732 0.93204 0.94212 0.89377 0.90907 0.92331 0.92033 0.75704 0.91998 0.88753 0.89738 0.87917 0.88434 0.89479 0.92611 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.68 13.06 21.65 0.28 -59.39 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 3 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.24 -12.97 9.98 84.03 0.84 -12.13 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -36.52 5.26 -316.79 -1.67 -38.19 16 10 C 0.16 5.95 3.53 46.29 0.16 6.11 16 11 H 0.05 1.89 8.12 -2.39 -0.02 1.87 16 12 C -0.14 -4.36 6.51 31.67 0.21 -4.15 16 13 C -0.11 -2.11 6.13 31.32 0.19 -1.92 16 14 C -0.09 -1.62 2.98 -10.07 -0.03 -1.65 16 15 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 16 C 0.13 2.51 4.70 86.38 0.41 2.91 16 17 N -0.72 -9.48 4.86 -463.05 -2.25 -11.73 16 18 C 0.51 8.55 7.14 87.66 0.63 9.18 16 19 O -0.56 -14.59 15.83 -3.04 -0.05 -14.63 16 20 C -0.02 -0.22 2.90 -12.19 -0.04 -0.25 16 21 H 0.16 0.56 8.14 -2.38 -0.02 0.54 16 22 C -0.10 -0.96 4.67 30.78 0.14 -0.82 16 23 C -0.11 -0.59 5.89 30.78 0.18 -0.41 16 24 C -0.04 -0.38 6.31 29.96 0.19 -0.19 16 25 C -0.01 -0.22 7.11 41.75 0.30 0.08 16 26 N -0.29 -6.49 12.40 -48.99 -0.61 -7.10 16 27 N -0.11 -2.23 13.40 37.02 0.50 -1.73 16 28 N -0.37 -5.06 6.76 -48.27 -0.33 -5.38 16 29 H 0.45 3.44 6.86 -219.69 -1.51 1.94 16 30 C -0.01 -0.09 6.38 41.50 0.26 0.17 16 31 C -0.12 -3.33 5.97 31.68 0.19 -3.14 16 32 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.37 20.00 7.73 -92.71 -0.72 19.28 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.26 7.58 -2.39 -0.02 1.24 16 38 H 0.06 1.36 8.14 -2.38 -0.02 1.35 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.41 2.67 6.41 -92.71 -0.59 2.08 16 41 H 0.06 0.89 7.74 -2.39 -0.02 0.87 16 42 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 0.27 8.12 -2.38 -0.02 0.25 16 44 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.06 1.77 7.74 -2.39 -0.02 1.75 16 48 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -77.54 382.28 0.19 -77.34 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -1.82 Total: 23.17 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 4.10 Total: -10.35 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -4.07 Total: -123.52 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.05 Total: -14.63 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -77.54 0.19 -77.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086788367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.293 kcal (2) G-P(sol) polarization free energy of solvation -77.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds