Wall clock time and date at job start Tue Mar 31 2020 18:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99750 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.67274 * 31.77236 * 10 9 7 12 12 C 1.54885 * 110.76220 * 268.32842 * 10 9 7 13 13 C 1.54263 * 104.19972 * 203.74728 * 12 10 9 14 14 C 1.53872 * 106.59900 * 23.61133 * 13 12 10 15 15 H 1.09006 * 110.07030 * 240.69410 * 14 13 12 16 16 C 1.52997 * 110.03375 * 119.28633 * 14 13 12 17 17 N 1.46500 * 109.47246 * 67.83286 * 16 14 13 18 18 C 1.34771 * 119.99911 * 180.02562 * 17 16 14 19 19 O 1.21592 * 120.00215 * 359.97438 * 18 17 16 20 20 C 1.47522 * 119.99850 * 180.02562 * 18 17 16 21 21 C 1.36600 * 125.77301 * 180.02562 * 20 18 17 22 22 N 1.34816 * 106.84229 * 179.97438 * 21 20 18 23 23 C 1.46499 * 126.59389 * 179.97438 * 22 21 20 24 24 C 1.52996 * 109.47297 * 124.99539 * 23 22 21 25 25 C 1.52995 * 117.50165 * 243.62333 * 24 23 22 26 26 C 1.52992 * 60.00009 * 252.50611 * 25 24 23 27 27 N 1.40207 * 106.80835 * 359.97438 * 22 21 20 28 28 N 1.28755 * 108.37197 * 359.75201 * 27 22 21 29 29 C 1.54264 * 106.59758 * 359.97438 * 14 13 12 30 30 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 32 32 H 1.08993 * 110.48700 * 322.43021 * 12 10 9 33 33 H 1.09004 * 110.48334 * 85.06845 * 12 10 9 34 34 H 1.09009 * 110.03267 * 264.32650 * 13 12 10 35 35 H 1.08998 * 110.07503 * 142.91787 * 13 12 10 36 36 H 1.08996 * 109.46994 * 187.83456 * 16 14 13 37 37 H 1.08999 * 109.47012 * 307.83081 * 16 14 13 38 38 H 0.97001 * 119.99972 * 0.02562 * 17 16 14 39 39 H 1.08004 * 126.57702 * 359.96907 * 21 20 18 40 40 H 1.08998 * 109.47048 * 244.99429 * 23 22 21 41 41 H 1.08999 * 109.47157 * 4.99683 * 23 22 21 42 42 H 1.09004 * 115.55199 * 29.32880 * 24 23 22 43 43 H 1.09003 * 117.49769 * 359.97438 * 25 24 23 44 44 H 1.08996 * 117.50398 * 145.02231 * 25 24 23 45 45 H 1.09005 * 117.50266 * 252.50444 * 26 25 24 46 46 H 1.09002 * 117.51782 * 107.47812 * 26 25 24 47 47 H 1.09005 * 110.48840 * 217.71210 * 29 14 13 48 48 H 1.08997 * 110.48668 * 95.06883 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0013 -3.5564 0.5375 12 6 2.2960 -4.1533 -1.4471 13 6 2.4851 -5.6771 -1.2982 14 6 1.7855 -6.0809 0.0114 15 1 2.5070 -6.5183 0.7015 16 6 0.6658 -7.0821 -0.2797 17 7 1.2478 -8.3463 -0.7373 18 6 0.4456 -9.3815 -1.0549 19 8 -0.7613 -9.2666 -0.9612 20 6 1.0317 -10.6547 -1.5151 21 6 0.3330 -11.7746 -1.8667 22 7 1.2406 -12.7050 -2.2247 23 6 0.9602 -14.0696 -2.6778 24 6 1.6239 -14.3023 -4.0365 25 6 0.7095 -14.5809 -5.2311 26 6 1.5465 -15.7109 -4.6286 27 7 2.5044 -12.1153 -2.0799 28 7 2.3433 -10.9068 -1.6659 29 6 1.1962 -4.7884 0.6129 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0042 32 1 1.4301 -3.9357 -2.0722 33 1 3.1934 -3.6965 -1.8644 34 1 3.5469 -5.9180 -1.2440 35 1 2.0275 -6.1950 -2.1410 36 1 0.0884 -7.2556 0.6284 37 1 0.0125 -6.6813 -1.0546 38 1 2.2106 -8.4381 -0.8117 39 1 -0.7406 -11.8921 -1.8592 40 1 1.3559 -14.7815 -1.9534 41 1 -0.1170 -14.2073 -2.7714 42 1 2.5321 -13.7283 -4.2206 43 1 -0.3651 -14.5987 -5.0489 44 1 1.0158 -14.1900 -6.2013 45 1 2.4036 -16.0636 -5.2025 46 1 1.0230 -16.4720 -4.0500 47 1 1.2906 -4.7953 1.6989 48 1 0.1525 -4.6729 0.3206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086839660.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:05 Heat of formation + Delta-G solvation = 84.027088 kcal Electronic energy + Delta-G solvation = -27115.294196 eV Core-core repulsion = 23207.921474 eV Total energy + Delta-G solvation = -3907.372722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.55205 -39.61121 -38.36963 -37.99333 -34.96091 -34.51787 -33.30298 -31.42562 -30.63791 -29.10925 -28.37014 -27.17201 -24.81899 -23.44373 -23.09443 -23.00616 -22.70941 -21.58455 -20.47388 -19.67124 -19.34078 -18.42203 -17.11205 -16.89366 -16.55263 -16.16653 -15.84652 -15.42658 -15.05688 -14.97760 -14.77166 -14.61151 -14.10736 -13.95880 -13.71280 -13.27211 -12.80251 -12.76369 -12.67606 -12.35229 -12.22332 -12.10937 -11.78876 -11.63936 -11.25839 -11.10676 -10.97317 -10.82336 -10.75442 -10.62326 -10.54290 -10.50868 -10.24912 -10.17671 -10.09490 -9.77430 -9.64375 -9.61545 -9.05702 -8.83179 -6.89637 -5.72491 -3.00720 0.77706 1.44755 1.56660 2.98386 3.06888 3.14590 3.46525 3.51630 3.53280 3.61016 3.89998 4.02810 4.19669 4.24397 4.42705 4.48788 4.62389 4.64618 4.65601 4.88456 4.95424 5.00849 5.02570 5.14282 5.20102 5.40033 5.41386 5.46202 5.57222 5.63049 5.75717 5.79603 5.94276 5.96296 6.03346 6.10259 6.13568 6.28878 6.40124 6.43579 6.53269 6.63203 6.79072 6.94234 7.17107 7.34428 7.65572 7.74789 8.07665 8.46589 9.57394 10.16832 10.50932 11.50219 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032884 B = 0.001607 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.279521 B =17416.237283 C =17614.637528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.056 0.944 12 C -0.143 4.143 13 C -0.121 4.121 14 C -0.101 4.101 15 H 0.075 0.925 16 C 0.126 3.874 17 N -0.710 5.710 18 C 0.601 3.399 19 O -0.541 6.541 20 C -0.100 4.100 21 C 0.094 3.906 22 N -0.358 5.358 23 C 0.154 3.846 24 C -0.178 4.178 25 C -0.176 4.176 26 C -0.164 4.164 27 N -0.062 5.062 28 N -0.204 5.204 29 C -0.122 4.122 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.408 0.592 39 H 0.205 0.795 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.064 0.936 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.377 -34.863 -6.758 35.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.066 3.934 11 H 0.074 0.926 12 C -0.184 4.184 13 C -0.159 4.159 14 C -0.120 4.120 15 H 0.093 0.907 16 C 0.004 3.996 17 N -0.360 5.360 18 C 0.385 3.615 19 O -0.417 6.417 20 C -0.239 4.239 21 C -0.063 4.063 22 N -0.143 5.143 23 C 0.033 3.967 24 C -0.197 4.197 25 C -0.213 4.213 26 C -0.202 4.202 27 N -0.043 5.043 28 N -0.078 5.078 29 C -0.161 4.161 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.244 0.756 39 H 0.221 0.779 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.139 0.861 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.083 0.917 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.120 -34.829 -6.802 35.551 hybrid contribution -0.456 0.831 -0.129 0.957 sum 1.664 -33.998 -6.931 34.737 Atomic orbital electron populations 1.69663 1.05095 1.25592 1.57813 1.24738 0.95500 0.97662 1.03119 0.86206 0.78652 0.83957 0.77477 1.21790 1.21819 1.20787 1.19278 0.91015 0.84211 1.42490 0.91187 1.42388 1.05762 0.99789 1.88072 1.21163 0.94333 0.85580 0.92351 0.92629 1.23065 1.01311 0.92827 1.01211 1.22210 0.99552 0.97915 0.96199 1.21964 0.96519 0.95529 0.98026 0.90696 1.21640 0.96098 0.81883 1.00015 1.45860 1.10789 1.12760 1.66591 1.16744 0.85902 0.81594 0.77253 1.90822 1.13634 1.82768 1.54510 1.21525 0.89594 0.97748 1.15045 1.23392 0.98140 0.88274 0.96480 1.50457 1.06347 1.12517 1.44985 1.21613 1.01778 0.77641 0.95651 1.22540 1.02740 1.01665 0.92721 1.23154 0.97790 1.02700 0.97613 1.22996 1.03099 0.90791 1.03292 1.81978 1.00052 1.01651 1.20572 1.74654 1.16209 1.07644 1.09279 1.22603 1.00474 0.93298 0.99752 0.93555 0.78199 0.91878 0.92613 0.92324 0.92371 0.91223 0.90848 0.75643 0.77869 0.87804 0.87516 0.86117 0.88254 0.88218 0.87977 0.88169 0.91741 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.69 9.96 -15.06 -0.15 -6.84 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -18.20 5.23 -51.51 -0.27 -18.47 16 10 C 0.18 3.50 3.56 -65.95 -0.23 3.26 16 11 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 12 C -0.14 -2.55 6.51 -25.08 -0.16 -2.71 16 13 C -0.12 -1.67 6.18 -25.62 -0.16 -1.82 16 14 C -0.10 -1.32 2.96 -89.51 -0.27 -1.59 16 15 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 16 C 0.13 1.63 4.69 -4.04 -0.02 1.61 16 17 N -0.71 -8.49 5.34 -61.36 -0.33 -8.82 16 18 C 0.60 7.77 7.82 -12.48 -0.10 7.68 16 19 O -0.54 -8.38 16.86 5.28 0.09 -8.29 16 20 C -0.10 -1.11 6.99 -83.55 -0.58 -1.69 16 21 C 0.09 0.75 11.27 -16.83 -0.19 0.56 16 22 N -0.36 -2.63 3.69 -61.06 -0.23 -2.85 16 23 C 0.15 0.53 6.82 -4.04 -0.03 0.50 16 24 C -0.18 -0.72 5.93 -90.63 -0.54 -1.26 16 25 C -0.18 -0.57 10.18 -26.74 -0.27 -0.84 16 26 C -0.16 -0.42 10.25 -26.74 -0.27 -0.70 16 27 N -0.06 -0.66 13.48 60.35 0.81 0.16 16 28 N -0.20 -2.39 12.04 32.85 0.40 -2.00 16 29 C -0.12 -1.98 5.98 -25.08 -0.15 -2.13 16 30 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.38 10.31 7.76 -40.82 -0.32 9.99 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 35 H 0.06 0.78 7.61 -51.93 -0.40 0.39 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.41 4.39 8.04 -40.82 -0.33 4.07 16 39 H 0.20 1.02 8.06 -52.48 -0.42 0.59 16 40 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.11 0.10 7.82 -51.93 -0.41 -0.31 16 42 H 0.12 0.74 7.94 -51.93 -0.41 0.32 16 43 H 0.10 0.23 8.03 -51.93 -0.42 -0.19 16 44 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.07 1.18 7.73 -51.93 -0.40 0.78 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -34.20 401.96 -8.70 -42.90 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -7.72 Total: 7.96 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -3.22 Total: -6.48 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 1.11 Total: -59.73 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.29 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.20 -8.70 -42.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086839660.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.924 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds