Wall clock time and date at job start Tue Mar 31 2020 18:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99750 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.67274 * 31.77236 * 10 9 7 12 12 C 1.54885 * 110.76220 * 268.32842 * 10 9 7 13 13 C 1.54263 * 104.19972 * 203.74728 * 12 10 9 14 14 C 1.53872 * 106.59900 * 23.61133 * 13 12 10 15 15 H 1.09006 * 110.07030 * 240.69410 * 14 13 12 16 16 C 1.52997 * 110.03375 * 119.28633 * 14 13 12 17 17 N 1.46500 * 109.47246 * 67.83286 * 16 14 13 18 18 C 1.34771 * 119.99911 * 180.02562 * 17 16 14 19 19 O 1.21592 * 120.00215 * 359.97438 * 18 17 16 20 20 C 1.47522 * 119.99850 * 180.02562 * 18 17 16 21 21 C 1.36600 * 125.77301 * 180.02562 * 20 18 17 22 22 N 1.34816 * 106.84229 * 179.97438 * 21 20 18 23 23 C 1.46499 * 126.59389 * 179.97438 * 22 21 20 24 24 C 1.52996 * 109.47297 * 124.99539 * 23 22 21 25 25 C 1.52995 * 117.50165 * 243.62333 * 24 23 22 26 26 C 1.52992 * 60.00009 * 252.50611 * 25 24 23 27 27 N 1.40207 * 106.80835 * 359.97438 * 22 21 20 28 28 N 1.28755 * 108.37197 * 359.75201 * 27 22 21 29 29 C 1.54264 * 106.59758 * 359.97438 * 14 13 12 30 30 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 32 32 H 1.08993 * 110.48700 * 322.43021 * 12 10 9 33 33 H 1.09004 * 110.48334 * 85.06845 * 12 10 9 34 34 H 1.09009 * 110.03267 * 264.32650 * 13 12 10 35 35 H 1.08998 * 110.07503 * 142.91787 * 13 12 10 36 36 H 1.08996 * 109.46994 * 187.83456 * 16 14 13 37 37 H 1.08999 * 109.47012 * 307.83081 * 16 14 13 38 38 H 0.97001 * 119.99972 * 0.02562 * 17 16 14 39 39 H 1.08004 * 126.57702 * 359.96907 * 21 20 18 40 40 H 1.08998 * 109.47048 * 244.99429 * 23 22 21 41 41 H 1.08999 * 109.47157 * 4.99683 * 23 22 21 42 42 H 1.09004 * 115.55199 * 29.32880 * 24 23 22 43 43 H 1.09003 * 117.49769 * 359.97438 * 25 24 23 44 44 H 1.08996 * 117.50398 * 145.02231 * 25 24 23 45 45 H 1.09005 * 117.50266 * 252.50444 * 26 25 24 46 46 H 1.09002 * 117.51782 * 107.47812 * 26 25 24 47 47 H 1.09005 * 110.48840 * 217.71210 * 29 14 13 48 48 H 1.08997 * 110.48668 * 95.06883 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0013 -3.5564 0.5375 12 6 2.2960 -4.1533 -1.4471 13 6 2.4851 -5.6771 -1.2982 14 6 1.7855 -6.0809 0.0114 15 1 2.5070 -6.5183 0.7015 16 6 0.6658 -7.0821 -0.2797 17 7 1.2478 -8.3463 -0.7373 18 6 0.4456 -9.3815 -1.0549 19 8 -0.7613 -9.2666 -0.9612 20 6 1.0317 -10.6547 -1.5151 21 6 0.3330 -11.7746 -1.8667 22 7 1.2406 -12.7050 -2.2247 23 6 0.9602 -14.0696 -2.6778 24 6 1.6239 -14.3023 -4.0365 25 6 0.7095 -14.5809 -5.2311 26 6 1.5465 -15.7109 -4.6286 27 7 2.5044 -12.1153 -2.0799 28 7 2.3433 -10.9068 -1.6659 29 6 1.1962 -4.7884 0.6129 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0042 32 1 1.4301 -3.9357 -2.0722 33 1 3.1934 -3.6965 -1.8644 34 1 3.5469 -5.9180 -1.2440 35 1 2.0275 -6.1950 -2.1410 36 1 0.0884 -7.2556 0.6284 37 1 0.0125 -6.6813 -1.0546 38 1 2.2106 -8.4381 -0.8117 39 1 -0.7406 -11.8921 -1.8592 40 1 1.3559 -14.7815 -1.9534 41 1 -0.1170 -14.2073 -2.7714 42 1 2.5321 -13.7283 -4.2206 43 1 -0.3651 -14.5987 -5.0489 44 1 1.0158 -14.1900 -6.2013 45 1 2.4036 -16.0636 -5.2025 46 1 1.0230 -16.4720 -4.0500 47 1 1.2906 -4.7953 1.6989 48 1 0.1525 -4.6729 0.3206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086839660.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:04 Heat of formation + Delta-G solvation = 60.838144 kcal Electronic energy + Delta-G solvation = -27116.299744 eV Core-core repulsion = 23207.921474 eV Total energy + Delta-G solvation = -3908.378270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.24503 -40.64259 -39.34429 -38.62614 -36.33500 -35.24949 -34.83457 -32.65179 -32.01435 -30.31036 -29.09007 -28.55245 -26.12905 -24.94411 -24.14500 -23.43698 -23.26214 -22.15761 -21.44929 -20.89031 -20.57963 -19.29507 -19.00084 -17.57959 -17.24116 -17.17086 -16.77084 -16.69582 -16.13378 -15.86963 -15.66467 -15.40127 -15.31218 -15.04989 -14.79225 -14.42897 -14.25009 -13.96577 -13.57993 -13.33704 -13.29739 -12.94814 -12.83435 -12.67218 -12.43177 -12.36014 -12.26452 -12.12385 -11.95976 -11.76529 -11.64843 -11.63337 -11.50950 -11.33871 -11.26401 -11.15736 -10.97769 -10.87869 -10.42670 -10.02888 -8.95963 -7.92284 -5.20176 0.14201 0.60630 1.06318 1.47927 1.49621 1.58012 2.11929 2.23181 2.58152 2.78056 3.17206 3.25656 3.39948 3.67328 3.73870 3.79594 3.82755 3.87088 3.92533 3.97144 4.04617 4.14749 4.32623 4.39643 4.44246 4.51436 4.55180 4.64418 4.67022 4.76988 4.78438 4.81409 4.83334 4.93944 4.99261 5.10992 5.12885 5.14772 5.21938 5.22347 5.34927 5.45495 5.47847 5.51852 5.56695 5.65319 6.30581 6.42088 6.89617 7.12995 7.35891 8.14673 8.36599 9.31414 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032884 B = 0.001607 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.279521 B =17416.237283 C =17614.637528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.735 5.735 10 C 0.164 3.836 11 H 0.055 0.945 12 C -0.138 4.138 13 C -0.109 4.109 14 C -0.085 4.085 15 H 0.099 0.901 16 C 0.134 3.866 17 N -0.703 5.703 18 C 0.602 3.398 19 O -0.572 6.572 20 C -0.125 4.125 21 C 0.111 3.889 22 N -0.345 5.345 23 C 0.146 3.854 24 C -0.190 4.190 25 C -0.179 4.179 26 C -0.153 4.153 27 N -0.086 5.086 28 N -0.223 5.223 29 C -0.114 4.114 30 H 0.250 0.750 31 H 0.372 0.628 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.415 0.585 39 H 0.236 0.764 40 H 0.120 0.880 41 H 0.141 0.859 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.119 0.881 47 H 0.071 0.929 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.966 -37.447 -6.767 38.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.372 4.372 8 H 0.094 0.906 9 N -0.374 5.374 10 C 0.055 3.945 11 H 0.073 0.927 12 C -0.178 4.178 13 C -0.147 4.147 14 C -0.104 4.104 15 H 0.118 0.882 16 C 0.011 3.989 17 N -0.354 5.354 18 C 0.387 3.613 19 O -0.451 6.451 20 C -0.265 4.265 21 C -0.047 4.047 22 N -0.129 5.129 23 C 0.028 3.972 24 C -0.209 4.209 25 C -0.216 4.216 26 C -0.190 4.190 27 N -0.066 5.066 28 N -0.097 5.097 29 C -0.154 4.154 30 H 0.059 0.941 31 H 0.204 0.796 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.252 0.748 39 H 0.252 0.748 40 H 0.138 0.862 41 H 0.159 0.841 42 H 0.112 0.888 43 H 0.132 0.868 44 H 0.108 0.892 45 H 0.118 0.882 46 H 0.138 0.862 47 H 0.090 0.910 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.791 -37.482 -6.826 38.200 hybrid contribution -0.624 1.490 -0.182 1.626 sum 2.167 -35.991 -7.008 36.731 Atomic orbital electron populations 1.69824 1.06626 1.25921 1.59834 1.25549 0.96355 1.01057 1.04028 0.85161 0.77766 0.79655 0.77323 1.21628 1.22267 1.19337 1.19678 0.91461 0.85390 1.40630 0.90636 1.42597 1.05383 1.01080 1.88301 1.21460 0.94456 0.84634 0.93943 0.92701 1.22894 1.00006 0.95831 0.99114 1.22133 1.01176 0.94586 0.96795 1.21829 0.96726 0.94032 0.97862 0.88233 1.21447 0.95719 0.82213 0.99565 1.45762 1.11126 1.12249 1.66243 1.16962 0.85525 0.82177 0.76596 1.90800 1.14840 1.83426 1.55999 1.21435 0.89993 0.97968 1.17111 1.23860 0.99328 0.87188 0.94360 1.50712 1.05216 1.13493 1.43488 1.22070 1.03962 0.75778 0.95430 1.22434 1.02210 1.02751 0.93498 1.23234 0.98564 1.02940 0.96840 1.23085 1.02867 0.90438 1.02630 1.81904 1.01831 1.01570 1.21318 1.74617 1.16736 1.08375 1.09954 1.22484 0.99300 0.93433 1.00137 0.94139 0.79641 0.94057 0.93241 0.90081 0.91706 0.91218 0.92352 0.74782 0.74757 0.86239 0.84105 0.88762 0.86755 0.89205 0.88246 0.86228 0.91043 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 46.94 29.55 68.60 2.03 48.96 16 4 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.24 -13.55 9.96 84.03 0.84 -12.71 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.73 -37.82 5.23 -316.89 -1.66 -39.48 16 10 C 0.16 6.46 3.56 46.28 0.16 6.63 16 11 H 0.05 2.17 8.09 -2.39 -0.02 2.15 16 12 C -0.14 -4.87 6.51 31.67 0.21 -4.66 16 13 C -0.11 -2.81 6.18 31.32 0.19 -2.61 16 14 C -0.09 -2.08 2.96 -10.07 -0.03 -2.11 16 15 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 16 C 0.13 3.29 4.69 86.38 0.40 3.70 16 17 N -0.70 -15.94 5.34 -466.30 -2.49 -18.43 16 18 C 0.60 15.02 7.82 86.69 0.68 15.70 16 19 O -0.57 -17.31 16.86 -4.00 -0.07 -17.38 16 20 C -0.13 -2.63 6.99 40.82 0.29 -2.34 16 21 C 0.11 1.53 11.27 83.85 0.95 2.48 16 22 N -0.34 -4.36 3.69 -347.10 -1.28 -5.64 16 23 C 0.15 0.59 6.82 86.38 0.59 1.18 16 24 C -0.19 -1.24 5.93 -10.80 -0.06 -1.31 16 25 C -0.18 -0.84 10.18 30.59 0.31 -0.52 16 26 C -0.15 -0.46 10.25 30.59 0.31 -0.15 16 27 N -0.09 -1.74 13.48 37.02 0.50 -1.24 16 28 N -0.22 -5.06 12.04 -49.99 -0.60 -5.66 16 29 C -0.11 -3.64 5.98 31.66 0.19 -3.45 16 30 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16 31 H 0.37 20.64 7.76 -92.71 -0.72 19.92 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.06 1.63 7.61 -2.39 -0.02 1.61 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.42 8.24 8.04 -92.71 -0.75 7.49 16 39 H 0.24 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.14 -0.35 7.82 -2.39 -0.02 -0.37 16 42 H 0.09 1.15 7.94 -2.38 -0.02 1.13 16 43 H 0.11 0.19 8.03 -2.39 -0.02 0.17 16 44 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 46 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 47 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 48 H 0.06 1.99 7.73 -2.39 -0.02 1.97 16 Total: -1.00 -75.85 401.96 1.72 -74.13 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.49 Total: 29.37 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.49 Total: -4.27 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -5.25 Total: -130.82 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.07 Total: -17.38 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Total: -75.85 1.72 -74.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086839660.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.970 kcal (2) G-P(sol) polarization free energy of solvation -75.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds