Wall clock time and date at job start Tue Mar 31 2020 18:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00378 * 2 1 4 4 H 1.48500 * 109.47170 * 270.00050 * 3 2 1 5 5 H 1.48491 * 109.47064 * 30.00212 * 3 2 1 6 6 H 1.48498 * 109.47239 * 150.00229 * 3 2 1 7 7 C 1.38815 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00188 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00150 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00312 * 180.02562 * 9 7 2 11 11 H 1.08995 * 110.05302 * 33.58204 * 10 9 7 12 12 C 1.54270 * 110.03104 * 272.16479 * 10 9 7 13 13 C 1.54886 * 104.19525 * 264.32648 * 12 10 9 14 14 C 1.54887 * 102.74977 * 322.05699 * 13 12 10 15 15 H 1.09008 * 110.59590 * 279.20951 * 14 13 12 16 16 C 1.52999 * 110.48769 * 156.62456 * 14 13 12 17 17 N 1.46499 * 109.47160 * 70.22248 * 16 14 13 18 18 C 1.34779 * 120.00052 * 179.97438 * 17 16 14 19 19 O 1.21286 * 119.99651 * 0.02562 * 18 17 16 20 20 C 1.50698 * 120.00095 * 180.02562 * 18 17 16 21 21 H 1.09002 * 109.45758 * 300.00151 * 20 18 17 22 22 C 1.53109 * 109.45844 * 180.02562 * 20 18 17 23 23 C 1.53419 * 109.57622 * 169.91894 * 22 20 18 24 24 C 1.50599 * 108.33109 * 49.82606 * 23 22 20 25 25 N 1.32917 * 129.16433 * 163.48579 * 24 23 22 26 26 N 1.29020 * 108.63360 * 180.13664 * 25 24 23 27 27 N 1.29104 * 110.25934 * 359.96802 * 26 25 24 28 28 H 0.97003 * 126.00432 * 179.91689 * 27 26 25 29 29 C 1.34392 * 107.98622 * 359.94169 * 27 26 25 30 30 C 1.50504 * 129.25730 * 180.22646 * 29 27 26 31 31 C 1.53875 * 110.03287 * 155.00269 * 10 9 7 32 32 H 0.97004 * 119.99492 * 359.97438 * 1 2 3 33 33 H 0.97006 * 119.99932 * 359.97438 * 9 7 2 34 34 H 1.09006 * 110.48592 * 23.00202 * 12 10 9 35 35 H 1.08996 * 110.48632 * 145.64222 * 12 10 9 36 36 H 1.09004 * 110.75469 * 203.73989 * 13 12 10 37 37 H 1.08997 * 110.75817 * 80.37541 * 13 12 10 38 38 H 1.09002 * 109.46913 * 310.22695 * 16 14 13 39 39 H 1.09001 * 109.47008 * 190.22582 * 16 14 13 40 40 H 0.96999 * 120.00397 * 0.02562 * 17 16 14 41 41 H 1.08997 * 109.45507 * 289.95737 * 22 20 18 42 42 H 1.09004 * 109.45433 * 49.91337 * 22 20 18 43 43 H 1.08996 * 109.69055 * 169.52903 * 23 22 20 44 44 H 1.08997 * 109.69801 * 290.07559 * 23 22 20 45 45 H 1.08999 * 109.67515 * 43.76395 * 30 29 27 46 46 H 1.09005 * 109.69482 * 283.18810 * 30 29 27 47 47 H 1.08997 * 110.02903 * 359.97438 * 31 10 9 48 48 H 1.09002 * 110.06878 * 238.58972 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2024 -0.0011 10 6 4.1120 -2.4711 -0.0022 11 1 3.5599 -3.2209 -0.5688 12 6 4.3293 -2.9571 1.4457 13 6 5.7474 -2.4501 1.8077 14 6 6.5280 -2.6442 0.4842 15 1 6.8453 -3.6813 0.3746 16 6 7.7368 -1.7076 0.4331 17 7 8.7407 -2.1527 1.4028 18 6 9.8980 -1.4745 1.5340 19 8 10.1081 -0.4955 0.8496 20 6 10.9309 -1.9326 2.5311 21 1 10.5011 -1.9165 3.5326 22 6 12.1404 -0.9951 2.4798 23 6 13.0778 -1.3007 3.6552 24 6 13.3306 -2.7850 3.6859 25 7 14.2844 -3.4612 4.3182 26 7 14.1320 -4.7182 4.0704 27 7 13.1134 -4.9014 3.2985 28 1 12.7939 -5.7561 2.9692 29 6 12.5739 -3.6999 3.0311 30 6 11.3741 -3.3610 2.1881 31 6 5.5100 -2.2721 -0.6135 32 1 -0.4849 0.8401 0.0004 33 1 3.8646 -0.3623 -0.0014 34 1 3.5858 -2.5181 2.1111 35 1 4.2896 -4.0453 1.4929 36 1 6.1817 -3.0538 2.6046 37 1 5.7209 -1.3976 2.0899 38 1 7.4210 -0.6932 0.6768 39 1 8.1667 -1.7236 -0.5684 40 1 8.5729 -2.9358 1.9499 41 1 12.6746 -1.1428 1.5413 42 1 11.8013 0.0388 2.5457 43 1 14.0205 -0.7704 3.5205 44 1 12.6105 -0.9878 4.5888 45 1 10.5649 -4.0585 2.4043 46 1 11.6385 -3.4200 1.1323 47 1 5.6433 -1.2317 -0.9097 48 1 5.6369 -2.9249 -1.4772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086852510.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:33 Heat of formation + Delta-G solvation = 47.505474 kcal Electronic energy + Delta-G solvation = -28165.782856 eV Core-core repulsion = 24256.826438 eV Total energy + Delta-G solvation = -3908.956418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.92648 -40.39615 -38.48523 -37.01709 -35.16044 -34.37231 -33.40762 -31.35545 -30.79033 -30.71878 -29.12445 -27.70102 -25.47883 -24.44471 -23.42202 -23.14988 -22.84926 -21.08223 -20.27936 -19.72811 -19.37249 -18.68567 -17.58892 -17.39077 -16.67238 -16.42828 -16.06691 -15.31789 -14.97527 -14.58013 -14.53372 -14.40312 -14.33807 -14.03130 -13.95945 -13.39407 -13.13066 -12.83041 -12.66884 -12.48517 -12.36573 -12.07085 -11.90384 -11.69490 -11.54222 -11.42637 -11.08491 -10.98325 -10.83949 -10.79684 -10.70330 -10.52904 -10.44305 -10.41392 -10.09250 -9.94326 -9.60737 -9.39159 -9.27781 -8.93456 -7.27973 -5.79440 -3.14668 1.03671 2.05006 2.10284 2.39803 2.86267 3.36037 3.39203 3.44438 3.67526 3.94017 4.16242 4.18528 4.40438 4.51370 4.57061 4.65698 4.72622 4.76469 4.79643 4.89737 4.90485 5.03277 5.17619 5.26903 5.34918 5.41874 5.50537 5.52115 5.58732 5.62113 5.64722 5.70939 5.80817 5.84738 5.90517 5.94343 6.01708 6.15443 6.21074 6.24168 6.32085 6.46098 6.58162 6.74403 6.94326 7.20978 7.93123 7.97366 7.98213 8.40237 9.19096 9.91873 10.11506 11.38887 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023923 B = 0.002067 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.141661 B =13541.359130 C =14172.109901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.179 3.821 11 H 0.057 0.943 12 C -0.146 4.146 13 C -0.115 4.115 14 C -0.104 4.104 15 H 0.077 0.923 16 C 0.124 3.876 17 N -0.725 5.725 18 C 0.516 3.484 19 O -0.533 6.533 20 C -0.102 4.102 21 H 0.107 0.893 22 C -0.101 4.101 23 C -0.035 4.035 24 C -0.013 4.013 25 N -0.257 5.257 26 N -0.088 5.088 27 N -0.381 5.381 28 H 0.449 0.551 29 C -0.013 4.013 30 C -0.037 4.037 31 C -0.124 4.124 32 H 0.259 0.741 33 H 0.360 0.640 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.399 0.601 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.069 0.931 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.369 -10.124 5.669 28.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.070 3.930 11 H 0.075 0.925 12 C -0.187 4.187 13 C -0.152 4.152 14 C -0.123 4.123 15 H 0.095 0.905 16 C 0.001 3.999 17 N -0.376 5.376 18 C 0.301 3.699 19 O -0.409 6.409 20 C -0.125 4.125 21 H 0.125 0.875 22 C -0.139 4.139 23 C -0.074 4.074 24 C -0.153 4.153 25 N -0.123 5.123 26 N -0.067 5.067 27 N -0.100 5.100 28 H 0.294 0.706 29 C -0.149 4.149 30 C -0.077 4.077 31 C -0.163 4.163 32 H 0.069 0.931 33 H 0.193 0.807 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.233 0.767 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.113 0.887 47 H 0.088 0.912 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 27.476 -10.043 5.983 29.860 hybrid contribution -0.686 0.553 -0.443 0.987 sum 26.790 -9.490 5.540 28.956 Atomic orbital electron populations 1.69704 1.05116 1.25813 1.57535 1.24682 0.95234 0.97220 1.02076 0.86566 0.79214 0.85016 0.77816 1.21086 1.21796 1.20306 1.19084 0.80709 0.94642 1.42930 0.89247 1.42904 1.03947 1.01892 1.90017 1.20766 0.90112 0.89200 0.92967 0.92461 1.23095 0.95950 0.99030 1.00588 1.22525 0.96216 1.01244 0.95227 1.22250 0.93960 0.98631 0.97445 0.90498 1.21553 0.87525 0.98714 0.92085 1.46082 1.17859 1.31860 1.41834 1.20374 0.82409 0.83425 0.83658 1.90744 1.78378 1.26297 1.45457 1.21376 0.96047 0.94868 1.00162 0.87526 1.21489 0.93743 1.00074 0.98628 1.20037 1.00861 0.86936 0.99600 1.21815 0.94923 0.98192 1.00383 1.74859 1.20939 0.96946 1.19574 1.78603 1.04936 1.13060 1.10080 1.44706 1.21346 1.09711 1.34270 0.70552 1.21735 1.01705 0.85656 1.05797 1.20118 0.92634 0.96149 0.98784 1.22493 0.94860 1.01968 0.96976 0.93079 0.80664 0.90671 0.92905 0.92769 0.91504 0.91082 0.91463 0.76671 0.90604 0.89104 0.89084 0.89477 0.89230 0.88749 0.91237 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.97 13.97 55.49 0.78 -28.19 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 21.87 27.73 -169.99 -4.71 17.16 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.24 -6.66 10.44 -15.06 -0.16 -6.82 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 N -0.74 -16.74 4.88 -52.34 -0.26 -17.00 16 10 C 0.18 3.14 3.55 -66.81 -0.24 2.90 16 11 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16 12 C -0.15 -2.24 6.54 -25.07 -0.16 -2.40 16 13 C -0.11 -1.37 6.19 -24.74 -0.15 -1.53 16 14 C -0.10 -1.08 2.89 -88.97 -0.26 -1.34 16 15 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 16 C 0.12 1.28 4.96 -4.04 -0.02 1.26 16 17 N -0.72 -5.60 5.35 -60.29 -0.32 -5.93 16 18 C 0.52 4.60 7.13 -10.99 -0.08 4.52 16 19 O -0.53 -7.10 15.81 5.55 0.09 -7.02 16 20 C -0.10 -0.59 2.50 -91.49 -0.23 -0.82 16 21 H 0.11 0.49 8.12 -51.93 -0.42 0.07 16 22 C -0.10 -0.65 4.64 -26.46 -0.12 -0.78 16 23 C -0.04 -0.22 6.30 -27.72 -0.17 -0.40 16 24 C -0.01 -0.11 7.11 -83.12 -0.59 -0.70 16 25 N -0.26 -2.80 12.40 33.16 0.41 -2.39 16 26 N -0.09 -0.85 13.40 60.35 0.81 -0.04 16 27 N -0.38 -2.24 6.97 33.38 0.23 -2.01 16 28 H 0.45 0.84 8.96 -190.07 -1.70 -0.86 16 29 C -0.01 -0.08 7.15 -82.52 -0.59 -0.67 16 30 C -0.04 -0.15 5.42 -27.75 -0.15 -0.30 16 31 C -0.12 -1.68 6.14 -25.62 -0.16 -1.84 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.36 8.05 5.38 -40.82 -0.22 7.83 16 34 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.92 7.97 -51.93 -0.41 0.51 16 38 H 0.07 0.89 8.02 -51.93 -0.42 0.47 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.40 2.00 8.11 -40.82 -0.33 1.67 16 41 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 42 H 0.09 0.66 7.76 -51.93 -0.40 0.25 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.15 7.90 -51.93 -0.41 -0.26 16 46 H 0.09 0.38 8.12 -51.93 -0.42 -0.04 16 47 H 0.07 1.02 7.31 -51.93 -0.38 0.64 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 382.95 15.07 5.77 5.77 Total: -1.00 -35.88 382.95 -9.31 -45.19 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.93 Total: 3.36 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -3.18 Total: -8.90 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 1.65 Total: -55.56 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: 0.09 Total: -7.02 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.88 -9.31 -45.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086852510.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.695 kcal (2) G-P(sol) polarization free energy of solvation -35.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds