Wall clock time and date at job start Tue Mar 31 2020 18:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00378 * 2 1 4 4 H 1.48500 * 109.47170 * 270.00050 * 3 2 1 5 5 H 1.48491 * 109.47064 * 30.00212 * 3 2 1 6 6 H 1.48498 * 109.47239 * 150.00229 * 3 2 1 7 7 C 1.38815 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00188 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00150 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00312 * 180.02562 * 9 7 2 11 11 H 1.08995 * 110.05302 * 33.58204 * 10 9 7 12 12 C 1.54270 * 110.03104 * 272.16479 * 10 9 7 13 13 C 1.54886 * 104.19525 * 264.32648 * 12 10 9 14 14 C 1.54887 * 102.74977 * 322.05699 * 13 12 10 15 15 H 1.09008 * 110.59590 * 279.20951 * 14 13 12 16 16 C 1.52999 * 110.48769 * 156.62456 * 14 13 12 17 17 N 1.46499 * 109.47160 * 70.22248 * 16 14 13 18 18 C 1.34779 * 120.00052 * 179.97438 * 17 16 14 19 19 O 1.21286 * 119.99651 * 0.02562 * 18 17 16 20 20 C 1.50698 * 120.00095 * 180.02562 * 18 17 16 21 21 H 1.09002 * 109.45758 * 300.00151 * 20 18 17 22 22 C 1.53109 * 109.45844 * 180.02562 * 20 18 17 23 23 C 1.53419 * 109.57622 * 169.91894 * 22 20 18 24 24 C 1.50599 * 108.33109 * 49.82606 * 23 22 20 25 25 N 1.32917 * 129.16433 * 163.48579 * 24 23 22 26 26 N 1.29020 * 108.63360 * 180.13664 * 25 24 23 27 27 N 1.29104 * 110.25934 * 359.96802 * 26 25 24 28 28 H 0.97003 * 126.00432 * 179.91689 * 27 26 25 29 29 C 1.34392 * 107.98622 * 359.94169 * 27 26 25 30 30 C 1.50504 * 129.25730 * 180.22646 * 29 27 26 31 31 C 1.53875 * 110.03287 * 155.00269 * 10 9 7 32 32 H 0.97004 * 119.99492 * 359.97438 * 1 2 3 33 33 H 0.97006 * 119.99932 * 359.97438 * 9 7 2 34 34 H 1.09006 * 110.48592 * 23.00202 * 12 10 9 35 35 H 1.08996 * 110.48632 * 145.64222 * 12 10 9 36 36 H 1.09004 * 110.75469 * 203.73989 * 13 12 10 37 37 H 1.08997 * 110.75817 * 80.37541 * 13 12 10 38 38 H 1.09002 * 109.46913 * 310.22695 * 16 14 13 39 39 H 1.09001 * 109.47008 * 190.22582 * 16 14 13 40 40 H 0.96999 * 120.00397 * 0.02562 * 17 16 14 41 41 H 1.08997 * 109.45507 * 289.95737 * 22 20 18 42 42 H 1.09004 * 109.45433 * 49.91337 * 22 20 18 43 43 H 1.08996 * 109.69055 * 169.52903 * 23 22 20 44 44 H 1.08997 * 109.69801 * 290.07559 * 23 22 20 45 45 H 1.08999 * 109.67515 * 43.76395 * 30 29 27 46 46 H 1.09005 * 109.69482 * 283.18810 * 30 29 27 47 47 H 1.08997 * 110.02903 * 359.97438 * 31 10 9 48 48 H 1.09002 * 110.06878 * 238.58972 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2024 -0.0011 10 6 4.1120 -2.4711 -0.0022 11 1 3.5599 -3.2209 -0.5688 12 6 4.3293 -2.9571 1.4457 13 6 5.7474 -2.4501 1.8077 14 6 6.5280 -2.6442 0.4842 15 1 6.8453 -3.6813 0.3746 16 6 7.7368 -1.7076 0.4331 17 7 8.7407 -2.1527 1.4028 18 6 9.8980 -1.4745 1.5340 19 8 10.1081 -0.4955 0.8496 20 6 10.9309 -1.9326 2.5311 21 1 10.5011 -1.9165 3.5326 22 6 12.1404 -0.9951 2.4798 23 6 13.0778 -1.3007 3.6552 24 6 13.3306 -2.7850 3.6859 25 7 14.2844 -3.4612 4.3182 26 7 14.1320 -4.7182 4.0704 27 7 13.1134 -4.9014 3.2985 28 1 12.7939 -5.7561 2.9692 29 6 12.5739 -3.6999 3.0311 30 6 11.3741 -3.3610 2.1881 31 6 5.5100 -2.2721 -0.6135 32 1 -0.4849 0.8401 0.0004 33 1 3.8646 -0.3623 -0.0014 34 1 3.5858 -2.5181 2.1111 35 1 4.2896 -4.0453 1.4929 36 1 6.1817 -3.0538 2.6046 37 1 5.7209 -1.3976 2.0899 38 1 7.4210 -0.6932 0.6768 39 1 8.1667 -1.7236 -0.5684 40 1 8.5729 -2.9358 1.9499 41 1 12.6746 -1.1428 1.5413 42 1 11.8013 0.0388 2.5457 43 1 14.0205 -0.7704 3.5205 44 1 12.6105 -0.9878 4.5888 45 1 10.5649 -4.0585 2.4043 46 1 11.6385 -3.4200 1.1323 47 1 5.6433 -1.2317 -0.9097 48 1 5.6369 -2.9249 -1.4772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086852510.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:32 Heat of formation + Delta-G solvation = 20.420198 kcal Electronic energy + Delta-G solvation = -28166.957362 eV Core-core repulsion = 24256.826438 eV Total energy + Delta-G solvation = -3910.130924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.47130 -41.09428 -39.59199 -37.61659 -36.31853 -35.04784 -34.80825 -32.96219 -31.62446 -31.26573 -30.12375 -29.00504 -26.25579 -25.28615 -24.66430 -23.96458 -23.72725 -21.78209 -21.14215 -20.83026 -20.33773 -19.51507 -19.17797 -18.02301 -17.32372 -17.22978 -16.70915 -16.58990 -16.24362 -15.89430 -15.34392 -15.03298 -14.98477 -14.85715 -14.74817 -14.50935 -14.32635 -14.16056 -13.93863 -13.31658 -13.10842 -13.06136 -13.02356 -12.61514 -12.53255 -12.22142 -12.21167 -12.12179 -12.02614 -11.87664 -11.75112 -11.65925 -11.57436 -11.51212 -11.37814 -11.32031 -10.93690 -10.77497 -10.01706 -9.90997 -9.25154 -8.01421 -5.32629 0.53385 1.37411 1.39557 1.44824 1.46807 1.58236 1.87669 2.22389 2.48394 3.21207 3.29462 3.47798 3.62742 3.69327 3.72663 3.78264 3.82657 3.96618 4.02096 4.09685 4.28350 4.39150 4.46602 4.49949 4.56360 4.57796 4.64839 4.69805 4.79851 4.80837 4.85802 4.88212 4.99060 5.00887 5.09476 5.13819 5.18009 5.23027 5.25539 5.35084 5.45012 5.47921 5.57823 5.65251 5.82627 5.99401 6.24359 6.62985 7.10992 7.32119 7.39867 7.90660 8.06738 9.20384 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023923 B = 0.002067 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.141661 B =13541.359130 C =14172.109901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.068 4.068 3 Si 0.952 3.048 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.254 1.254 7 C -0.223 4.223 8 H 0.057 0.943 9 N -0.749 5.749 10 C 0.163 3.837 11 H 0.042 0.958 12 C -0.142 4.142 13 C -0.107 4.107 14 C -0.084 4.084 15 H 0.113 0.887 16 C 0.131 3.869 17 N -0.710 5.710 18 C 0.519 3.481 19 O -0.581 6.581 20 C -0.094 4.094 21 H 0.126 0.874 22 C -0.097 4.097 23 C -0.030 4.030 24 C -0.034 4.034 25 N -0.296 5.296 26 N -0.119 5.119 27 N -0.362 5.362 28 H 0.466 0.534 29 C 0.004 3.996 30 C -0.031 4.031 31 C -0.120 4.120 32 H 0.256 0.744 33 H 0.362 0.638 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.066 0.934 40 H 0.417 0.583 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.127 0.873 46 H 0.101 0.899 47 H 0.057 0.943 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.549 -11.620 5.978 31.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.780 3.220 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.179 1.179 7 C -0.354 4.354 8 H 0.075 0.925 9 N -0.393 5.393 10 C 0.055 3.945 11 H 0.060 0.940 12 C -0.182 4.182 13 C -0.144 4.144 14 C -0.103 4.103 15 H 0.131 0.869 16 C 0.007 3.993 17 N -0.363 5.363 18 C 0.305 3.695 19 O -0.461 6.461 20 C -0.116 4.116 21 H 0.144 0.856 22 C -0.135 4.135 23 C -0.069 4.069 24 C -0.175 4.175 25 N -0.162 5.162 26 N -0.098 5.098 27 N -0.084 5.084 28 H 0.315 0.685 29 C -0.133 4.133 30 C -0.071 4.071 31 C -0.159 4.159 32 H 0.065 0.935 33 H 0.196 0.804 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.255 0.745 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.145 0.855 46 H 0.120 0.880 47 H 0.075 0.925 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 29.719 -11.640 6.318 32.536 hybrid contribution -1.415 0.894 -0.580 1.771 sum 28.304 -10.746 5.738 30.815 Atomic orbital electron populations 1.69883 1.07061 1.26441 1.60283 1.25473 0.96076 1.01086 1.03281 0.85451 0.78578 0.80013 0.77969 1.20653 1.22569 1.17856 1.19061 0.82933 0.93210 1.40203 0.92524 1.42955 1.02249 1.04015 1.90064 1.21137 0.91763 0.86720 0.94836 0.93961 1.22947 0.97268 1.00306 0.97720 1.22482 0.94228 1.00519 0.97216 1.22122 0.92755 1.00527 0.94862 0.86867 1.21301 0.87923 0.97423 0.92665 1.45891 1.16886 1.32167 1.41308 1.20827 0.82798 0.82568 0.83266 1.90737 1.79349 1.28526 1.47457 1.21325 0.94661 0.95557 1.00031 0.85606 1.21406 0.94096 0.99861 0.98175 1.20019 1.00836 0.86136 0.99901 1.22185 0.95097 0.99232 1.00961 1.74809 1.22516 0.97717 1.21118 1.78528 1.06616 1.12835 1.11771 1.44708 1.20189 1.10595 1.32939 0.68463 1.21971 1.01545 0.85126 1.04694 1.20220 0.92691 0.95534 0.98611 1.22412 0.93007 1.01866 0.98590 0.93536 0.80437 0.94443 0.90502 0.89043 0.93568 0.93639 0.91593 0.74517 0.91540 0.90152 0.89332 0.88589 0.85543 0.88042 0.92471 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.22 13.97 21.65 0.30 -62.92 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.95 45.78 27.73 68.60 1.90 47.68 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 6 H -0.25 -11.06 6.52 99.48 0.65 -10.41 16 7 C -0.22 -12.48 10.44 84.03 0.88 -11.60 16 8 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 9 N -0.75 -33.55 4.88 -319.51 -1.56 -35.11 16 10 C 0.16 5.52 3.55 45.72 0.16 5.68 16 11 H 0.04 1.54 8.09 -2.39 -0.02 1.52 16 12 C -0.14 -4.07 6.54 31.67 0.21 -3.86 16 13 C -0.11 -2.16 6.19 31.88 0.20 -1.96 16 14 C -0.08 -1.37 2.89 -9.72 -0.03 -1.40 16 15 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 16 C 0.13 2.23 4.96 86.38 0.43 2.66 16 17 N -0.71 -7.83 5.35 -463.05 -2.48 -10.31 16 18 C 0.52 7.59 7.13 87.66 0.63 8.22 16 19 O -0.58 -14.57 15.81 -3.05 -0.05 -14.62 16 20 C -0.09 -0.75 2.50 -11.36 -0.03 -0.77 16 21 H 0.13 0.60 8.12 -2.39 -0.02 0.58 16 22 C -0.10 -1.09 4.64 30.77 0.14 -0.95 16 23 C -0.03 -0.34 6.30 29.96 0.19 -0.15 16 24 C -0.03 -0.51 7.11 41.75 0.30 -0.21 16 25 N -0.30 -6.26 12.40 -48.99 -0.61 -6.87 16 26 N -0.12 -2.17 13.40 37.02 0.50 -1.67 16 27 N -0.36 -3.30 6.97 -48.30 -0.34 -3.64 16 28 H 0.47 0.23 8.96 -219.68 -1.97 -1.74 16 29 C 0.00 0.03 7.15 41.49 0.30 0.33 16 30 C -0.03 -0.11 5.42 29.93 0.16 0.05 16 31 C -0.12 -2.92 6.14 31.32 0.19 -2.73 16 32 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 33 H 0.36 15.84 5.38 -92.70 -0.50 15.34 16 34 H 0.04 1.35 8.04 -2.38 -0.02 1.33 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.05 1.15 7.97 -2.39 -0.02 1.13 16 38 H 0.05 1.04 8.02 -2.39 -0.02 1.02 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.42 1.62 8.11 -92.71 -0.75 0.87 16 41 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 42 H 0.08 1.09 7.76 -2.39 -0.02 1.07 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.13 -0.40 7.90 -2.39 -0.02 -0.42 16 46 H 0.10 0.34 8.12 -2.38 -0.02 0.32 16 47 H 0.06 1.56 7.31 -2.39 -0.02 1.54 16 48 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -83.35 382.95 -0.42 -83.77 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -2.28 Total: 13.91 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 4.19 Total: -10.23 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -4.18 Total: -120.51 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.05 Total: -14.62 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.90 Total: 47.68 kcal Total: -83.35 -0.42 -83.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086852510.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.188 kcal (2) G-P(sol) polarization free energy of solvation -83.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds