Wall clock time and date at job start Tue Mar 31 2020 18:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48505 * 109.47351 * 269.99427 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99893 * 3 2 1 6 6 H 1.48508 * 109.47372 * 149.99689 * 3 2 1 7 7 C 1.38820 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99882 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99473 * 0.02562 * 7 2 1 10 10 C 1.47585 * 134.48860 * 180.02562 * 9 7 2 11 11 C 1.53948 * 86.11461 * 155.35688 * 10 9 7 12 12 N 1.46498 * 113.74007 * 137.95227 * 11 10 9 13 13 C 1.35311 * 125.86844 * 277.21861 * 12 11 10 14 14 C 1.35354 * 106.17745 * 180.18693 * 13 12 11 15 15 C 1.50701 * 126.75382 * 179.85282 * 14 13 12 16 16 N 1.46500 * 109.47209 * 94.71002 * 15 14 13 17 17 C 1.34774 * 119.99881 * 179.97438 * 16 15 14 18 18 O 1.21285 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99942 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47078 * 59.99862 * 19 17 16 21 21 C 1.52999 * 109.47317 * 179.97438 * 20 19 17 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 21 20 24 24 C 1.53000 * 109.47083 * 179.97438 * 19 17 16 25 25 N 1.33772 * 106.49227 * 359.59039 * 14 13 12 26 26 N 1.28624 * 108.88934 * 0.26089 * 25 14 13 27 27 C 1.47805 * 134.46141 * 359.86640 * 9 7 2 28 28 H 0.97000 * 120.00299 * 0.02562 * 1 2 3 29 29 H 1.08998 * 113.76942 * 41.05334 * 10 9 7 30 30 H 1.08997 * 113.86909 * 269.66835 * 10 9 7 31 31 H 1.09001 * 113.73731 * 269.15030 * 11 10 9 32 32 H 1.08000 * 126.91990 * 0.03708 * 13 12 11 33 33 H 1.09000 * 109.47120 * 334.70884 * 15 14 13 34 34 H 1.09002 * 109.47060 * 214.70980 * 15 14 13 35 35 H 0.96998 * 119.99994 * 0.02562 * 16 15 14 36 36 H 1.09002 * 109.46959 * 299.99950 * 19 17 16 37 37 H 1.08996 * 109.47853 * 300.00179 * 20 19 17 38 38 H 1.09002 * 109.47153 * 60.00207 * 20 19 17 39 39 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 41 41 H 1.09002 * 109.46935 * 299.99411 * 22 21 20 42 42 H 1.09001 * 109.46812 * 179.97438 * 22 21 20 43 43 H 1.08993 * 109.47194 * 179.97438 * 23 22 21 44 44 H 1.09002 * 109.46695 * 59.99734 * 23 22 21 45 45 H 1.08992 * 109.47399 * 299.99938 * 24 19 17 46 46 H 1.09004 * 109.46724 * 60.00424 * 24 19 17 47 47 H 1.08998 * 113.77622 * 90.37632 * 27 9 7 48 48 H 1.09005 * 113.83549 * 318.91510 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7201 -3.8102 0.0015 11 6 0.3465 -4.0826 0.6410 12 7 -0.3335 -5.2613 0.0981 13 6 -1.0704 -5.2992 -1.0361 14 6 -1.5119 -6.5730 -1.1565 15 6 -2.3790 -7.1265 -2.2578 16 7 -1.5320 -7.7296 -3.2899 17 6 -2.0934 -8.2923 -4.3783 18 8 -3.2997 -8.2989 -4.5036 19 6 -1.2221 -8.9131 -5.4397 20 6 -0.3955 -10.0437 -4.8238 21 6 0.4886 -10.6745 -5.9015 22 6 -0.3922 -11.2370 -7.0190 23 6 -1.2189 -10.1064 -7.6348 24 6 -2.1025 -9.4761 -6.5572 25 7 -1.0223 -7.2453 -0.1088 26 7 -0.3286 -6.4399 0.6155 27 6 -0.1057 -2.7571 0.0025 28 1 -0.4850 0.8400 -0.0004 29 1 2.5619 -4.0321 0.6574 30 1 1.8332 -4.2372 -0.9950 31 1 0.3582 -4.0631 1.7307 32 1 -1.2687 -4.4778 -1.7087 33 1 -2.9680 -6.3209 -2.6962 34 1 -3.0474 -7.8838 -1.8481 35 1 -0.5672 -7.7246 -3.1895 36 1 -0.5537 -8.1560 -5.8497 37 1 0.2317 -9.6432 -4.0275 38 1 -1.0639 -10.8008 -4.4138 39 1 1.0772 -11.4803 -5.4629 40 1 1.1571 -9.9176 -6.3119 41 1 -1.0607 -11.9939 -6.6086 42 1 0.2377 -11.6860 -7.7869 43 1 -1.8460 -10.5071 -8.4312 44 1 -0.5504 -9.3495 -8.0452 45 1 -2.7706 -10.2332 -6.1469 46 1 -2.6917 -8.6708 -6.9960 47 1 -0.5313 -2.8722 -0.9943 48 1 -0.7189 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094266130.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:21 Heat of formation + Delta-G solvation = 94.645263 kcal Electronic energy + Delta-G solvation = -28051.262435 eV Core-core repulsion = 24144.350152 eV Total energy + Delta-G solvation = -3906.912283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.09870 -40.30131 -38.41233 -37.84259 -35.25949 -33.44845 -32.14095 -31.75679 -31.04569 -30.77678 -28.00170 -26.85740 -25.31008 -24.42899 -23.65929 -22.82720 -21.95989 -21.12642 -20.66959 -19.90682 -19.64227 -17.74579 -17.22184 -16.67572 -16.42436 -15.84677 -15.52881 -15.17842 -15.11583 -14.67334 -14.41760 -14.34384 -14.25382 -14.08579 -13.41607 -13.14077 -12.99504 -12.81245 -12.58970 -12.49233 -12.20411 -12.13590 -11.87188 -11.58481 -11.44114 -11.40294 -11.21044 -10.99286 -10.97815 -10.94708 -10.73840 -10.55514 -10.41987 -10.26334 -9.94670 -9.88280 -9.58233 -9.17310 -9.12435 -9.06192 -7.29230 -6.07641 -3.43179 1.78958 2.41494 2.54448 2.61390 3.24228 3.29571 3.31504 3.33910 4.19366 4.32441 4.33272 4.39180 4.42099 4.68658 4.70935 4.85795 4.87083 4.88945 4.96751 5.08578 5.12561 5.15355 5.17633 5.20086 5.30111 5.37667 5.47774 5.52667 5.59985 5.71095 5.72590 5.75837 5.78929 5.85931 5.92333 6.00624 6.02001 6.07647 6.13272 6.13430 6.26698 6.29013 6.50633 6.76522 6.99900 7.13246 7.38783 7.64618 8.11235 8.70901 8.72612 9.38805 10.16047 11.09586 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.002159 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.077725 B =12963.838606 C =13585.842474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.001 4.001 3 Si 0.920 3.080 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.233 4.233 8 H 0.087 0.913 9 N -0.599 5.599 10 C 0.120 3.880 11 C 0.077 3.923 12 N -0.265 5.265 13 C -0.015 4.015 14 C -0.063 4.063 15 C 0.214 3.786 16 N -0.723 5.723 17 C 0.518 3.482 18 O -0.542 6.542 19 C -0.106 4.106 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.099 4.099 25 N -0.267 5.267 26 N -0.089 5.089 27 C 0.164 3.836 28 H 0.259 0.741 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.132 0.868 32 H 0.191 0.809 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.402 0.598 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.041 0.959 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.208 -17.910 -11.098 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.199 4.199 3 Si 0.749 3.251 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.360 4.360 8 H 0.105 0.895 9 N -0.325 5.325 10 C -0.007 4.007 11 C -0.025 4.025 12 N -0.057 5.057 13 C -0.169 4.169 14 C -0.202 4.202 15 C 0.089 3.911 16 N -0.375 5.375 17 C 0.304 3.696 18 O -0.419 6.419 19 C -0.127 4.127 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.158 4.158 24 C -0.137 4.137 25 N -0.134 5.134 26 N -0.068 5.068 27 C 0.037 3.963 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.150 0.850 32 H 0.208 0.792 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.237 0.763 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.059 0.941 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.525 -18.381 -9.947 20.955 hybrid contribution 0.637 1.842 -0.745 2.087 sum -0.888 -16.539 -10.693 19.714 Atomic orbital electron populations 1.69757 1.05178 1.26197 1.55337 1.24859 0.95795 0.97955 1.01259 0.86012 0.78677 0.82603 0.77812 1.21266 1.21341 1.20322 1.19000 0.90424 0.80959 1.45578 0.89483 1.45673 1.01604 0.99353 1.85892 1.22929 0.93428 0.86635 0.97737 1.25283 0.95454 0.80593 1.01149 1.47913 1.32013 1.09856 1.15951 1.23506 0.99561 1.00476 0.93341 1.21735 1.06978 0.91850 0.99596 1.19277 0.90208 0.97893 0.83689 1.46095 1.10810 1.59419 1.21181 1.20669 0.88929 0.77651 0.82315 1.90700 1.14928 1.58277 1.77995 1.21361 0.97671 0.98603 0.95070 1.21537 0.98181 0.97166 0.98024 1.21531 0.97694 1.00349 0.95998 1.21571 0.98490 0.98012 0.97885 1.21557 0.98469 0.98001 0.97752 1.21330 0.97044 1.00817 0.94465 1.75014 1.09330 1.25456 1.03588 1.78271 1.18553 0.88662 1.21299 1.22741 0.89404 0.86230 0.97938 0.93069 0.91966 0.93988 0.85028 0.79244 0.89687 0.89831 0.76338 0.88485 0.91355 0.91254 0.91618 0.91699 0.91891 0.92019 0.91706 0.91904 0.91179 0.91196 0.94103 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.94 11.39 55.49 0.63 -24.31 16 2 C 0.00 -0.03 5.50 -17.43 -0.10 -0.12 16 3 Si 0.92 20.55 29.55 -169.99 -5.02 15.53 16 4 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.23 -5.94 10.70 -15.06 -0.16 -6.10 16 8 H 0.09 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -13.66 3.70 -177.90 -0.66 -14.32 16 10 C 0.12 2.18 8.74 -2.96 -0.03 2.16 16 11 C 0.08 1.31 5.13 -70.16 -0.36 0.95 16 12 N -0.26 -4.26 3.54 -56.31 -0.20 -4.46 16 13 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 14 C -0.06 -0.87 6.62 -82.77 -0.55 -1.42 16 15 C 0.21 2.56 6.23 -5.19 -0.03 2.53 16 16 N -0.72 -7.74 5.44 -61.47 -0.33 -8.07 16 17 C 0.52 5.92 7.15 -10.99 -0.08 5.84 16 18 O -0.54 -8.11 15.98 5.55 0.09 -8.02 16 19 C -0.11 -0.89 2.53 -91.77 -0.23 -1.13 16 20 C -0.11 -0.82 5.10 -26.73 -0.14 -0.96 16 21 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 22 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 23 C -0.12 -0.80 5.92 -26.76 -0.16 -0.96 16 24 C -0.10 -0.84 4.49 -26.76 -0.12 -0.96 16 25 N -0.27 -4.39 12.41 33.29 0.41 -3.97 16 26 N -0.09 -1.53 13.16 60.35 0.79 -0.73 16 27 C 0.16 3.32 6.90 -2.85 -0.02 3.30 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 32 H 0.19 2.40 6.74 -52.49 -0.35 2.05 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.40 3.81 7.88 -40.82 -0.32 3.49 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 46 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 47 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 48 H 0.09 2.08 7.17 -51.93 -0.37 1.70 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -30.15 387.93 -8.56 -38.71 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.65 Total: 2.89 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.47 Total: 0.91 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.65 Total: -55.87 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.09 Total: -8.02 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.15 -8.56 -38.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094266130.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.357 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds