Wall clock time and date at job start Tue Mar 31 2020 18:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48505 * 109.47351 * 269.99427 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99893 * 3 2 1 6 6 H 1.48508 * 109.47372 * 149.99689 * 3 2 1 7 7 C 1.38820 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99882 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99473 * 0.02562 * 7 2 1 10 10 C 1.47585 * 134.48860 * 180.02562 * 9 7 2 11 11 C 1.53948 * 86.11461 * 155.35688 * 10 9 7 12 12 N 1.46498 * 113.74007 * 137.95227 * 11 10 9 13 13 C 1.35311 * 125.86844 * 277.21861 * 12 11 10 14 14 C 1.35354 * 106.17745 * 180.18693 * 13 12 11 15 15 C 1.50701 * 126.75382 * 179.85282 * 14 13 12 16 16 N 1.46500 * 109.47209 * 94.71002 * 15 14 13 17 17 C 1.34774 * 119.99881 * 179.97438 * 16 15 14 18 18 O 1.21285 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99942 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47078 * 59.99862 * 19 17 16 21 21 C 1.52999 * 109.47317 * 179.97438 * 20 19 17 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 21 20 24 24 C 1.53000 * 109.47083 * 179.97438 * 19 17 16 25 25 N 1.33772 * 106.49227 * 359.59039 * 14 13 12 26 26 N 1.28624 * 108.88934 * 0.26089 * 25 14 13 27 27 C 1.47805 * 134.46141 * 359.86640 * 9 7 2 28 28 H 0.97000 * 120.00299 * 0.02562 * 1 2 3 29 29 H 1.08998 * 113.76942 * 41.05334 * 10 9 7 30 30 H 1.08997 * 113.86909 * 269.66835 * 10 9 7 31 31 H 1.09001 * 113.73731 * 269.15030 * 11 10 9 32 32 H 1.08000 * 126.91990 * 0.03708 * 13 12 11 33 33 H 1.09000 * 109.47120 * 334.70884 * 15 14 13 34 34 H 1.09002 * 109.47060 * 214.70980 * 15 14 13 35 35 H 0.96998 * 119.99994 * 0.02562 * 16 15 14 36 36 H 1.09002 * 109.46959 * 299.99950 * 19 17 16 37 37 H 1.08996 * 109.47853 * 300.00179 * 20 19 17 38 38 H 1.09002 * 109.47153 * 60.00207 * 20 19 17 39 39 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 41 41 H 1.09002 * 109.46935 * 299.99411 * 22 21 20 42 42 H 1.09001 * 109.46812 * 179.97438 * 22 21 20 43 43 H 1.08993 * 109.47194 * 179.97438 * 23 22 21 44 44 H 1.09002 * 109.46695 * 59.99734 * 23 22 21 45 45 H 1.08992 * 109.47399 * 299.99938 * 24 19 17 46 46 H 1.09004 * 109.46724 * 60.00424 * 24 19 17 47 47 H 1.08998 * 113.77622 * 90.37632 * 27 9 7 48 48 H 1.09005 * 113.83549 * 318.91510 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7201 -3.8102 0.0015 11 6 0.3465 -4.0826 0.6410 12 7 -0.3335 -5.2613 0.0981 13 6 -1.0704 -5.2992 -1.0361 14 6 -1.5119 -6.5730 -1.1565 15 6 -2.3790 -7.1265 -2.2578 16 7 -1.5320 -7.7296 -3.2899 17 6 -2.0934 -8.2923 -4.3783 18 8 -3.2997 -8.2989 -4.5036 19 6 -1.2221 -8.9131 -5.4397 20 6 -0.3955 -10.0437 -4.8238 21 6 0.4886 -10.6745 -5.9015 22 6 -0.3922 -11.2370 -7.0190 23 6 -1.2189 -10.1064 -7.6348 24 6 -2.1025 -9.4761 -6.5572 25 7 -1.0223 -7.2453 -0.1088 26 7 -0.3286 -6.4399 0.6155 27 6 -0.1057 -2.7571 0.0025 28 1 -0.4850 0.8400 -0.0004 29 1 2.5619 -4.0321 0.6574 30 1 1.8332 -4.2372 -0.9950 31 1 0.3582 -4.0631 1.7307 32 1 -1.2687 -4.4778 -1.7087 33 1 -2.9680 -6.3209 -2.6962 34 1 -3.0474 -7.8838 -1.8481 35 1 -0.5672 -7.7246 -3.1895 36 1 -0.5537 -8.1560 -5.8497 37 1 0.2317 -9.6432 -4.0275 38 1 -1.0639 -10.8008 -4.4138 39 1 1.0772 -11.4803 -5.4629 40 1 1.1571 -9.9176 -6.3119 41 1 -1.0607 -11.9939 -6.6086 42 1 0.2377 -11.6860 -7.7869 43 1 -1.8460 -10.5071 -8.4312 44 1 -0.5504 -9.3495 -8.0452 45 1 -2.7706 -10.2332 -6.1469 46 1 -2.6917 -8.6708 -6.9960 47 1 -0.5313 -2.8722 -0.9943 48 1 -0.7189 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094266130.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:20 Heat of formation + Delta-G solvation = 76.201112 kcal Electronic energy + Delta-G solvation = -28052.062233 eV Core-core repulsion = 24144.350152 eV Total energy + Delta-G solvation = -3907.712082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.36096 -41.16060 -39.95055 -38.54823 -36.31681 -34.96813 -33.68650 -32.80314 -31.74252 -31.55080 -29.71286 -27.92584 -26.83220 -26.01783 -24.39918 -23.45453 -23.38003 -22.32753 -21.44910 -21.13912 -20.56714 -19.06383 -18.59225 -17.92424 -17.54627 -16.97550 -16.85869 -16.46809 -16.11326 -15.80730 -15.60544 -15.18224 -15.00339 -14.93332 -14.81119 -14.46149 -14.13190 -13.76935 -13.60975 -13.51792 -13.40992 -13.17282 -13.06184 -12.97618 -12.77287 -12.63040 -12.44119 -12.20819 -12.10898 -12.01539 -11.80189 -11.72577 -11.54896 -11.33284 -11.05470 -10.98785 -10.90789 -10.78037 -10.25575 -10.12667 -9.11256 -8.01219 -5.36509 0.56020 1.23558 1.28715 1.48524 1.49905 1.57448 1.63682 2.39312 2.43110 3.07121 3.11568 3.31079 3.33208 3.64111 3.72370 3.77597 3.82187 3.91406 3.99539 4.15285 4.25768 4.30365 4.33582 4.48250 4.49415 4.56315 4.57913 4.61286 4.62779 4.69286 4.73424 4.91361 4.99359 5.00540 5.04677 5.09725 5.14875 5.19278 5.27186 5.27962 5.33631 5.36468 5.39156 5.43048 5.58416 5.65635 5.77039 6.50962 6.80133 7.21442 7.45223 7.48667 8.33438 9.15562 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.002159 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.077725 B =12963.838606 C =13585.842474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.057 4.057 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.238 4.238 8 H 0.091 0.909 9 N -0.628 5.628 10 C 0.126 3.874 11 C 0.105 3.895 12 N -0.268 5.268 13 C -0.013 4.013 14 C -0.049 4.049 15 C 0.218 3.782 16 N -0.715 5.715 17 C 0.517 3.483 18 O -0.581 6.581 19 C -0.100 4.100 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.097 4.097 25 N -0.281 5.281 26 N -0.107 5.107 27 C 0.165 3.835 28 H 0.253 0.747 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.138 0.862 32 H 0.207 0.793 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.410 0.590 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.047 0.953 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 -18.733 -12.056 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.251 4.251 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.355 5.355 10 C 0.000 4.000 11 C 0.002 3.998 12 N -0.061 5.061 13 C -0.167 4.167 14 C -0.188 4.188 15 C 0.093 3.907 16 N -0.367 5.367 17 C 0.305 3.695 18 O -0.461 6.461 19 C -0.121 4.121 20 C -0.146 4.146 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.153 4.153 24 C -0.136 4.136 25 N -0.147 5.147 26 N -0.086 5.086 27 C 0.039 3.961 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.156 0.844 32 H 0.224 0.776 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.246 0.754 36 H 0.133 0.867 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.015 -19.252 -10.897 22.122 hybrid contribution 0.137 1.990 -0.470 2.049 sum 0.121 -17.262 -11.367 20.669 Atomic orbital electron populations 1.69911 1.06343 1.26232 1.57145 1.25606 0.96574 1.00856 1.02023 0.85071 0.77795 0.78895 0.77506 1.21282 1.22150 1.19177 1.19338 0.90981 0.82221 1.43985 0.89086 1.45913 1.02896 1.00468 1.86241 1.23021 0.94394 0.84031 0.98597 1.24692 0.94370 0.79660 1.01040 1.47717 1.32489 1.09418 1.16457 1.23825 0.98888 1.01096 0.92865 1.21911 1.06222 0.91491 0.99182 1.19244 0.89966 0.98040 0.83488 1.46017 1.11121 1.58921 1.20670 1.21209 0.88715 0.76966 0.82621 1.90685 1.16749 1.59811 1.78838 1.21387 0.97399 0.99233 0.94042 1.21526 0.98024 0.96471 0.98583 1.21530 0.97519 1.00714 0.95549 1.21579 0.98488 0.97693 0.98186 1.21535 0.98364 0.98295 0.97141 1.21303 0.97159 1.00071 0.95025 1.75004 1.09629 1.25769 1.04311 1.78280 1.19500 0.88904 1.21919 1.22611 0.88229 0.87415 0.97874 0.93795 0.90564 0.92798 0.84432 0.77630 0.88800 0.90460 0.75366 0.86717 0.90804 0.92371 0.90930 0.90851 0.92435 0.90819 0.91241 0.91049 0.92788 0.92409 0.93519 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.11 11.39 21.65 0.25 -51.87 16 2 C -0.06 -2.94 5.50 84.86 0.47 -2.47 16 3 Si 0.98 42.17 29.55 68.60 2.03 44.19 16 4 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.24 -11.98 10.70 84.04 0.90 -11.08 16 8 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.63 -28.16 3.70 -716.74 -2.65 -30.82 16 10 C 0.13 4.34 8.74 86.49 0.76 5.09 16 11 C 0.10 3.42 5.13 46.74 0.24 3.66 16 12 N -0.27 -8.19 3.54 -332.07 -1.18 -9.37 16 13 C -0.01 -0.36 10.72 83.49 0.89 0.53 16 14 C -0.05 -1.28 6.62 41.60 0.28 -1.01 16 15 C 0.22 4.94 6.23 85.63 0.53 5.47 16 16 N -0.72 -14.30 5.44 -466.78 -2.54 -16.84 16 17 C 0.52 11.38 7.15 87.66 0.63 12.01 16 18 O -0.58 -17.39 15.98 -3.05 -0.05 -17.44 16 19 C -0.10 -1.55 2.53 -11.54 -0.03 -1.58 16 20 C -0.11 -1.42 5.10 30.59 0.16 -1.27 16 21 C -0.12 -1.18 5.92 30.60 0.18 -1.00 16 22 C -0.12 -1.27 5.92 30.60 0.18 -1.09 16 23 C -0.12 -1.35 5.92 30.58 0.18 -1.16 16 24 C -0.10 -1.60 4.49 30.58 0.14 -1.47 16 25 N -0.28 -8.82 12.41 -48.60 -0.60 -9.42 16 26 N -0.11 -3.53 13.16 37.02 0.49 -3.05 16 27 C 0.17 6.63 6.90 86.43 0.60 7.23 16 28 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 29 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 32 H 0.21 4.80 6.74 -2.91 -0.02 4.78 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.41 6.95 7.88 -92.71 -0.73 6.22 16 36 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 0.89 7.56 -2.39 -0.02 0.87 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 46 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 47 H 0.05 1.81 6.31 -2.39 -0.02 1.80 16 48 H 0.06 2.92 7.17 -2.38 -0.02 2.90 16 Total: -1.00 -64.19 387.93 2.07 -62.12 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.24 Total: 20.61 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 6.10 Total: 11.88 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -6.24 Total: -121.36 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.05 Total: -17.44 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -64.19 2.07 -62.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094266130.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.324 kcal (2) G-P(sol) polarization free energy of solvation -64.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds