Wall clock time and date at job start Tue Mar 31 2020 17:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 120.00353 * 2 1 4 4 H 1.48501 * 109.46999 * 270.00254 * 3 2 1 5 5 H 1.48502 * 109.46771 * 30.00302 * 3 2 1 6 6 H 1.48496 * 109.47298 * 150.00415 * 3 2 1 7 7 C 1.38816 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99585 * 359.97438 * 7 2 1 9 9 N 1.36931 * 120.00287 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00273 * 179.97438 * 9 7 2 11 11 C 1.53785 * 113.61788 * 204.99751 * 10 9 7 12 12 C 1.53779 * 87.08008 * 219.93740 * 11 10 9 13 13 C 1.52998 * 113.61296 * 139.98365 * 12 11 10 14 14 N 1.46506 * 109.47237 * 176.52389 * 13 12 11 15 15 C 1.34773 * 119.99969 * 179.72043 * 14 13 12 16 16 O 1.21281 * 120.00220 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00080 * 180.02562 * 15 14 13 18 18 N 1.46500 * 109.47299 * 180.02562 * 17 15 14 19 19 N 1.29105 * 126.00799 * 269.69478 * 18 17 15 20 20 N 1.29022 * 110.25622 * 179.77602 * 19 18 17 21 21 C 1.32911 * 108.63469 * 0.41211 * 20 19 18 22 22 C 1.34394 * 126.00384 * 90.00186 * 18 17 15 23 23 C 1.50534 * 129.25744 * 0.20826 * 22 18 17 24 24 C 1.53432 * 108.32621 * 163.46289 * 23 22 18 25 25 C 1.53109 * 109.55384 * 49.71854 * 24 23 22 26 26 C 1.50600 * 129.16214 * 179.86300 * 21 20 19 27 27 C 1.53779 * 87.17581 * 25.39203 * 12 11 10 28 28 H 0.97004 * 120.00022 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99744 * 359.97438 * 9 7 2 30 30 H 1.09005 * 112.84903 * 336.19481 * 10 9 7 31 31 H 1.09003 * 113.61110 * 105.38705 * 11 10 9 32 32 H 1.08995 * 113.61146 * 334.48392 * 11 10 9 33 33 H 1.09003 * 113.61227 * 270.79296 * 12 11 10 34 34 H 1.09001 * 109.47671 * 56.52729 * 13 12 11 35 35 H 1.08998 * 109.47454 * 296.52727 * 13 12 11 36 36 H 0.97005 * 119.99811 * 0.02562 * 14 13 12 37 37 H 1.09004 * 109.46762 * 300.00389 * 17 15 14 38 38 H 1.08998 * 109.46924 * 59.99727 * 17 15 14 39 39 H 1.09000 * 109.69620 * 283.17236 * 23 22 18 40 40 H 1.08997 * 109.69545 * 43.75254 * 23 22 18 41 41 H 1.09009 * 109.45835 * 169.74274 * 24 23 22 42 42 H 1.08996 * 109.45906 * 289.70834 * 24 23 22 43 43 H 1.09001 * 109.44984 * 49.97220 * 25 24 23 44 44 H 1.09000 * 109.45279 * 169.90490 * 25 24 23 45 45 H 1.09001 * 109.69004 * 43.75514 * 26 21 20 46 46 H 1.09003 * 109.72214 * 283.20284 * 26 21 20 47 47 H 1.08994 * 113.61750 * 89.16179 * 27 12 11 48 48 H 1.09007 * 113.60960 * 220.06507 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.5262 -2.3659 0.5938 12 6 5.9837 -3.3113 -0.5294 13 6 7.3406 -2.9382 -1.1299 14 7 7.7252 -3.9398 -2.1276 15 6 8.8890 -3.8134 -2.7953 16 8 9.6182 -2.8708 -2.5700 17 6 9.2844 -4.8433 -3.8221 18 7 10.5809 -4.4828 -4.4013 19 7 10.7674 -3.7476 -5.4460 20 7 12.0291 -3.6221 -5.6845 21 6 12.7048 -4.3075 -4.7678 22 6 11.7849 -4.8641 -3.9418 23 6 12.1219 -5.7326 -2.7593 24 6 13.5762 -6.1999 -2.9029 25 6 14.4749 -4.9956 -3.1967 26 6 14.1931 -4.4773 -4.6128 27 6 4.7864 -2.7973 -1.3461 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3622 -0.0014 30 1 3.5279 -3.2970 0.4048 31 1 5.6137 -2.7977 1.5908 32 1 5.9556 -1.3664 0.5251 33 1 5.9128 -4.3670 -0.2674 34 1 8.0910 -2.9056 -0.3400 35 1 7.2709 -1.9599 -1.6053 36 1 7.1401 -4.6915 -2.3107 37 1 9.3587 -5.8210 -3.3459 38 1 8.5315 -4.8790 -4.6094 39 1 12.0094 -5.1598 -1.8388 40 1 11.4586 -6.5973 -2.7377 41 1 13.8979 -6.6756 -1.9764 42 1 13.6486 -6.9151 -3.7223 43 1 14.2710 -4.2058 -2.4737 44 1 15.5200 -5.2956 -3.1211 45 1 14.6894 -3.5177 -4.7583 46 1 14.5598 -5.1952 -5.3465 47 1 5.0131 -1.9161 -1.9461 48 1 4.2775 -3.5771 -1.9128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100684996.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:12 Heat of formation + Delta-G solvation = 85.935717 kcal Electronic energy + Delta-G solvation = -27832.882725 eV Core-core repulsion = 23925.592767 eV Total energy + Delta-G solvation = -3907.289958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.68379 -40.18393 -38.73602 -37.47008 -35.24766 -34.95841 -33.45392 -31.19631 -30.80458 -30.45913 -29.37123 -27.17558 -25.31476 -24.54371 -23.81629 -23.03874 -22.25390 -21.17133 -20.76672 -19.98291 -19.46076 -18.04861 -17.75072 -17.47598 -16.37616 -16.16767 -15.92058 -15.42621 -15.01622 -14.75337 -14.43672 -14.36520 -14.26251 -14.16041 -14.12657 -13.76787 -13.56321 -12.86599 -12.74075 -12.57507 -12.32191 -12.08638 -11.82537 -11.73452 -11.68508 -11.61719 -11.46810 -11.42470 -10.97160 -10.83609 -10.74728 -10.58199 -10.39166 -10.20688 -10.02781 -9.89288 -9.61582 -9.38256 -9.08676 -8.95389 -7.33365 -5.83618 -3.19611 1.21936 1.82208 2.06323 2.32764 2.79098 3.33801 3.37031 3.42247 3.75729 3.97891 4.11344 4.21369 4.30152 4.38636 4.45021 4.53523 4.55719 4.71652 4.72955 4.90761 4.97754 5.01182 5.03725 5.12338 5.25952 5.33007 5.34436 5.42045 5.50714 5.52760 5.57357 5.65045 5.69363 5.71702 5.72152 5.82427 5.94821 5.98701 6.07305 6.10797 6.17845 6.22886 6.39244 6.56634 6.87840 7.01779 7.70277 7.92009 8.28548 8.36009 9.13507 9.86319 10.05594 11.34402 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025419 B = 0.001875 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.293131 B =14925.952916 C =15237.336043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.091 0.909 9 N -0.737 5.737 10 C 0.172 3.828 11 C -0.145 4.145 12 C -0.127 4.127 13 C 0.132 3.868 14 N -0.716 5.716 15 C 0.497 3.503 16 O -0.520 6.520 17 C 0.094 3.906 18 N -0.269 5.269 19 N -0.083 5.083 20 N -0.259 5.259 21 C -0.021 4.021 22 C -0.008 4.008 23 C -0.047 4.047 24 C -0.113 4.113 25 C -0.121 4.121 26 C -0.032 4.032 27 C -0.162 4.162 28 H 0.260 0.740 29 H 0.363 0.637 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.404 0.596 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.955 -18.527 -4.821 33.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.376 5.376 10 C 0.061 3.939 11 C -0.185 4.185 12 C -0.146 4.146 13 C 0.010 3.990 14 N -0.368 5.368 15 C 0.280 3.720 16 O -0.395 6.395 17 C -0.032 4.032 18 N -0.060 5.060 19 N -0.061 5.061 20 N -0.124 5.124 21 C -0.161 4.161 22 C -0.142 4.142 23 C -0.086 4.086 24 C -0.152 4.152 25 C -0.159 4.159 26 C -0.071 4.071 27 C -0.203 4.203 28 H 0.070 0.930 29 H 0.196 0.804 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.239 0.761 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 27.460 -17.010 -5.766 32.812 hybrid contribution 0.358 0.346 0.695 0.855 sum 27.817 -16.664 -5.070 32.821 Atomic orbital electron populations 1.69698 1.05127 1.25946 1.57096 1.24701 0.95266 0.97301 1.01762 0.86564 0.79224 0.84939 0.77878 1.21005 1.21628 1.20297 1.19123 0.80657 0.94762 1.43506 0.89123 1.42757 1.04117 1.02001 1.88726 1.21523 0.89487 0.90111 0.92784 1.23473 0.99005 0.98927 0.97098 1.22649 0.92811 1.00014 0.99132 1.21514 0.96093 0.91398 0.90033 1.45917 1.20728 1.29086 1.41081 1.20371 0.82380 0.86967 0.82283 1.90827 1.51665 1.31992 1.65011 1.21862 0.83479 0.99377 0.98480 1.46251 1.06412 1.33444 1.19909 1.78627 1.12733 1.11651 1.03082 1.74805 0.96870 1.18185 1.22513 1.21625 0.97712 1.01241 0.95484 1.21753 0.84846 1.05534 1.02021 1.20220 0.98119 0.96934 0.93372 1.21573 0.92781 0.98113 1.02685 1.21651 0.99931 0.97996 0.96354 1.19944 0.87220 1.02467 0.97471 1.23966 0.95875 1.00591 0.99892 0.92975 0.80430 0.89777 0.91526 0.90316 0.88938 0.91437 0.91028 0.76130 0.84979 0.84343 0.89525 0.90261 0.90422 0.91141 0.91257 0.90507 0.89787 0.90023 0.90417 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.89 13.97 55.49 0.78 -28.11 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.95 27.73 -169.99 -4.71 17.23 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 7 C -0.25 -6.89 10.45 -15.06 -0.16 -7.05 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 9 N -0.74 -16.77 5.21 -52.54 -0.27 -17.04 16 10 C 0.17 3.00 4.48 -67.02 -0.30 2.70 16 11 C -0.15 -1.99 7.40 -25.92 -0.19 -2.18 16 12 C -0.13 -1.37 3.75 -89.81 -0.34 -1.71 16 13 C 0.13 1.41 5.50 -4.04 -0.02 1.39 16 14 N -0.72 -5.86 5.56 -60.29 -0.33 -6.19 16 15 C 0.50 5.01 7.90 -10.98 -0.09 4.93 16 16 O -0.52 -8.00 16.43 5.56 0.09 -7.91 16 17 C 0.09 0.64 6.72 -5.19 -0.03 0.60 16 18 N -0.27 -2.94 2.82 -58.43 -0.16 -3.11 16 19 N -0.08 -1.20 13.19 60.35 0.80 -0.40 16 20 N -0.26 -3.78 12.40 33.16 0.41 -3.37 16 21 C -0.02 -0.24 7.11 -83.12 -0.59 -0.83 16 22 C -0.01 -0.08 6.76 -82.50 -0.56 -0.64 16 23 C -0.05 -0.28 5.97 -27.74 -0.17 -0.44 16 24 C -0.11 -0.50 5.90 -26.45 -0.16 -0.66 16 25 C -0.12 -0.64 5.90 -26.46 -0.16 -0.79 16 26 C -0.03 -0.24 6.30 -27.72 -0.17 -0.41 16 27 C -0.16 -2.32 7.45 -25.83 -0.19 -2.51 16 28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.36 8.21 5.79 -40.82 -0.24 7.97 16 30 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 36 H 0.40 2.00 8.47 -40.82 -0.35 1.65 16 37 H 0.13 0.33 7.71 -51.93 -0.40 -0.07 16 38 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.29 7.87 -51.93 -0.41 -0.12 16 41 H 0.08 0.22 8.14 -51.92 -0.42 -0.20 16 42 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 43 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 44 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 1.23 7.92 -51.93 -0.41 0.82 16 48 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -37.94 390.96 -8.45 -46.40 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.71 Total: 4.15 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -3.22 Total: -7.54 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 1.21 Total: -58.22 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.91 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.94 -8.45 -46.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100684996.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.335 kcal (2) G-P(sol) polarization free energy of solvation -37.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds