Wall clock time and date at job start Tue Mar 31 2020 17:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 120.00353 * 2 1 4 4 H 1.48501 * 109.46999 * 270.00254 * 3 2 1 5 5 H 1.48502 * 109.46771 * 30.00302 * 3 2 1 6 6 H 1.48496 * 109.47298 * 150.00415 * 3 2 1 7 7 C 1.38816 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99585 * 359.97438 * 7 2 1 9 9 N 1.36931 * 120.00287 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00273 * 179.97438 * 9 7 2 11 11 C 1.53785 * 113.61788 * 204.99751 * 10 9 7 12 12 C 1.53779 * 87.08008 * 219.93740 * 11 10 9 13 13 C 1.52998 * 113.61296 * 139.98365 * 12 11 10 14 14 N 1.46506 * 109.47237 * 176.52389 * 13 12 11 15 15 C 1.34773 * 119.99969 * 179.72043 * 14 13 12 16 16 O 1.21281 * 120.00220 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00080 * 180.02562 * 15 14 13 18 18 N 1.46500 * 109.47299 * 180.02562 * 17 15 14 19 19 N 1.29105 * 126.00799 * 269.69478 * 18 17 15 20 20 N 1.29022 * 110.25622 * 179.77602 * 19 18 17 21 21 C 1.32911 * 108.63469 * 0.41211 * 20 19 18 22 22 C 1.34394 * 126.00384 * 90.00186 * 18 17 15 23 23 C 1.50534 * 129.25744 * 0.20826 * 22 18 17 24 24 C 1.53432 * 108.32621 * 163.46289 * 23 22 18 25 25 C 1.53109 * 109.55384 * 49.71854 * 24 23 22 26 26 C 1.50600 * 129.16214 * 179.86300 * 21 20 19 27 27 C 1.53779 * 87.17581 * 25.39203 * 12 11 10 28 28 H 0.97004 * 120.00022 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99744 * 359.97438 * 9 7 2 30 30 H 1.09005 * 112.84903 * 336.19481 * 10 9 7 31 31 H 1.09003 * 113.61110 * 105.38705 * 11 10 9 32 32 H 1.08995 * 113.61146 * 334.48392 * 11 10 9 33 33 H 1.09003 * 113.61227 * 270.79296 * 12 11 10 34 34 H 1.09001 * 109.47671 * 56.52729 * 13 12 11 35 35 H 1.08998 * 109.47454 * 296.52727 * 13 12 11 36 36 H 0.97005 * 119.99811 * 0.02562 * 14 13 12 37 37 H 1.09004 * 109.46762 * 300.00389 * 17 15 14 38 38 H 1.08998 * 109.46924 * 59.99727 * 17 15 14 39 39 H 1.09000 * 109.69620 * 283.17236 * 23 22 18 40 40 H 1.08997 * 109.69545 * 43.75254 * 23 22 18 41 41 H 1.09009 * 109.45835 * 169.74274 * 24 23 22 42 42 H 1.08996 * 109.45906 * 289.70834 * 24 23 22 43 43 H 1.09001 * 109.44984 * 49.97220 * 25 24 23 44 44 H 1.09000 * 109.45279 * 169.90490 * 25 24 23 45 45 H 1.09001 * 109.69004 * 43.75514 * 26 21 20 46 46 H 1.09003 * 109.72214 * 283.20284 * 26 21 20 47 47 H 1.08994 * 113.61750 * 89.16179 * 27 12 11 48 48 H 1.09007 * 113.60960 * 220.06507 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.5262 -2.3659 0.5938 12 6 5.9837 -3.3113 -0.5294 13 6 7.3406 -2.9382 -1.1299 14 7 7.7252 -3.9398 -2.1276 15 6 8.8890 -3.8134 -2.7953 16 8 9.6182 -2.8708 -2.5700 17 6 9.2844 -4.8433 -3.8221 18 7 10.5809 -4.4828 -4.4013 19 7 10.7674 -3.7476 -5.4460 20 7 12.0291 -3.6221 -5.6845 21 6 12.7048 -4.3075 -4.7678 22 6 11.7849 -4.8641 -3.9418 23 6 12.1219 -5.7326 -2.7593 24 6 13.5762 -6.1999 -2.9029 25 6 14.4749 -4.9956 -3.1967 26 6 14.1931 -4.4773 -4.6128 27 6 4.7864 -2.7973 -1.3461 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3622 -0.0014 30 1 3.5279 -3.2970 0.4048 31 1 5.6137 -2.7977 1.5908 32 1 5.9556 -1.3664 0.5251 33 1 5.9128 -4.3670 -0.2674 34 1 8.0910 -2.9056 -0.3400 35 1 7.2709 -1.9599 -1.6053 36 1 7.1401 -4.6915 -2.3107 37 1 9.3587 -5.8210 -3.3459 38 1 8.5315 -4.8790 -4.6094 39 1 12.0094 -5.1598 -1.8388 40 1 11.4586 -6.5973 -2.7377 41 1 13.8979 -6.6756 -1.9764 42 1 13.6486 -6.9151 -3.7223 43 1 14.2710 -4.2058 -2.4737 44 1 15.5200 -5.2956 -3.1211 45 1 14.6894 -3.5177 -4.7583 46 1 14.5598 -5.1952 -5.3465 47 1 5.0131 -1.9161 -1.9461 48 1 4.2775 -3.5771 -1.9128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100684996.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:11 Heat of formation + Delta-G solvation = 57.448379 kcal Electronic energy + Delta-G solvation = -27834.118028 eV Core-core repulsion = 23925.592767 eV Total energy + Delta-G solvation = -3908.525261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.46063 -41.05506 -39.89853 -37.96107 -36.28150 -35.84608 -35.11778 -32.81740 -31.63324 -31.12016 -30.20863 -28.18288 -26.48385 -25.57150 -25.09765 -23.63381 -23.17640 -22.35346 -21.62772 -20.76583 -20.52910 -19.40410 -18.79272 -18.44408 -17.15941 -17.08509 -16.78586 -16.49271 -16.09565 -15.99815 -15.66083 -15.00509 -14.90978 -14.86792 -14.76988 -14.74074 -14.56355 -14.35559 -13.99397 -13.54722 -13.27252 -13.18201 -13.06553 -13.05726 -12.71362 -12.56994 -12.24513 -12.17917 -12.03014 -11.92329 -11.82341 -11.74495 -11.63228 -11.45332 -11.33895 -11.15334 -10.89597 -10.77231 -10.22595 -9.83808 -9.27818 -8.04612 -5.36479 0.44992 1.20247 1.32339 1.35217 1.37390 1.44476 1.49358 2.07639 2.45498 3.17210 3.25892 3.44140 3.52335 3.57733 3.70307 3.71815 3.84600 3.89240 3.91572 4.02725 4.08179 4.11000 4.26730 4.36069 4.43200 4.52204 4.56358 4.58317 4.60788 4.72150 4.90915 4.94264 4.95642 5.01294 5.02153 5.08386 5.18757 5.19401 5.22049 5.26891 5.34008 5.37580 5.45385 5.56511 5.64926 5.77027 6.21646 6.35643 7.02832 7.06598 7.44068 7.85599 8.01980 9.16780 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025419 B = 0.001875 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.293131 B =14925.952916 C =15237.336043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.066 4.066 3 Si 0.950 3.050 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.253 1.253 7 C -0.230 4.230 8 H 0.062 0.938 9 N -0.746 5.746 10 C 0.144 3.856 11 C -0.138 4.138 12 C -0.093 4.093 13 C 0.138 3.862 14 N -0.699 5.699 15 C 0.499 3.501 16 O -0.580 6.580 17 C 0.090 3.910 18 N -0.269 5.269 19 N -0.130 5.130 20 N -0.302 5.302 21 C -0.044 4.044 22 C -0.002 4.002 23 C -0.047 4.047 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.034 4.034 27 C -0.157 4.157 28 H 0.257 0.743 29 H 0.363 0.637 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.424 0.576 37 H 0.185 0.815 38 H 0.161 0.839 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.099 0.901 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.060 0.940 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.400 -21.379 -3.801 37.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.257 4.257 3 Si 0.778 3.222 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.178 1.178 7 C -0.361 4.361 8 H 0.080 0.920 9 N -0.386 5.386 10 C 0.035 3.965 11 C -0.177 4.177 12 C -0.111 4.111 13 C 0.014 3.986 14 N -0.351 5.351 15 C 0.283 3.717 16 O -0.459 6.459 17 C -0.034 4.034 18 N -0.060 5.060 19 N -0.107 5.107 20 N -0.166 5.166 21 C -0.184 4.184 22 C -0.136 4.136 23 C -0.086 4.086 24 C -0.148 4.148 25 C -0.156 4.156 26 C -0.073 4.073 27 C -0.197 4.197 28 H 0.066 0.934 29 H 0.197 0.803 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.147 0.853 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.262 0.738 37 H 0.203 0.797 38 H 0.178 0.822 39 H 0.102 0.898 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.117 0.883 45 H 0.093 0.907 46 H 0.112 0.888 47 H 0.078 0.922 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 29.926 -19.935 -4.761 36.272 hybrid contribution -0.407 1.105 0.406 1.245 sum 29.519 -18.831 -4.354 35.283 Atomic orbital electron populations 1.69870 1.07001 1.26530 1.59949 1.25480 0.96090 1.01075 1.03066 0.85477 0.78701 0.80160 0.77842 1.20980 1.22301 1.17772 1.19141 0.82851 0.93463 1.40622 0.91997 1.42824 1.02463 1.04141 1.89204 1.22006 0.90884 0.87921 0.95690 1.23364 0.95798 0.99662 0.98923 1.22474 0.91239 1.01208 0.96230 1.21276 0.95957 0.90901 0.90437 1.45707 1.20493 1.28956 1.39994 1.20888 0.81906 0.86657 0.82210 1.90814 1.53566 1.34561 1.66967 1.22310 0.82539 1.00210 0.98318 1.46566 1.07999 1.32355 1.19107 1.78508 1.12903 1.13919 1.05374 1.74718 0.97599 1.19788 1.24504 1.22350 0.99665 1.01076 0.95343 1.22470 0.84156 1.04756 1.02254 1.20471 0.99841 0.97186 0.91139 1.21615 0.91463 0.97613 1.04145 1.21666 1.01634 0.98118 0.94208 1.20113 0.85063 1.02585 0.99521 1.23779 0.97156 1.00470 0.98335 0.93443 0.80347 0.90128 0.89773 0.91018 0.85327 0.91094 0.93702 0.73767 0.79738 0.82178 0.89753 0.87055 0.88032 0.90472 0.92566 0.88281 0.90668 0.88798 0.92167 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.81 13.97 21.65 0.30 -62.50 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.95 45.88 27.73 68.60 1.90 47.78 16 4 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 6 H -0.25 -11.05 6.52 99.48 0.65 -10.40 16 7 C -0.23 -12.81 10.45 84.04 0.88 -11.93 16 8 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 9 N -0.75 -33.51 5.21 -320.15 -1.67 -35.18 16 10 C 0.14 4.78 4.48 45.58 0.20 4.98 16 11 C -0.14 -3.39 7.40 31.12 0.23 -3.16 16 12 C -0.09 -1.67 3.75 -10.27 -0.04 -1.71 16 13 C 0.14 2.57 5.50 86.38 0.47 3.05 16 14 N -0.70 -9.05 5.56 -463.05 -2.57 -11.62 16 15 C 0.50 8.90 7.90 87.66 0.69 9.59 16 16 O -0.58 -17.53 16.43 -3.03 -0.05 -17.58 16 17 C 0.09 0.94 6.72 85.64 0.58 1.51 16 18 N -0.27 -5.54 2.82 -338.77 -0.95 -6.49 16 19 N -0.13 -3.82 13.19 37.02 0.49 -3.33 16 20 N -0.30 -9.18 12.40 -48.99 -0.61 -9.79 16 21 C -0.04 -0.99 7.11 41.75 0.30 -0.69 16 22 C 0.00 -0.03 6.76 41.50 0.28 0.25 16 23 C -0.05 -0.40 5.97 29.94 0.18 -0.22 16 24 C -0.11 -0.58 5.90 30.78 0.18 -0.40 16 25 C -0.12 -1.00 5.90 30.77 0.18 -0.82 16 26 C -0.03 -0.49 6.30 29.96 0.19 -0.30 16 27 C -0.16 -4.15 7.45 31.18 0.23 -3.92 16 28 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 29 H 0.36 16.04 5.79 -92.71 -0.54 15.50 16 30 H 0.08 2.73 8.10 -2.38 -0.02 2.71 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.90 8.08 -2.39 -0.02 1.88 16 33 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.11 7.87 -2.39 -0.02 1.09 16 36 H 0.42 2.16 8.47 -92.70 -0.79 1.38 16 37 H 0.19 -0.11 7.71 -2.39 -0.02 -0.13 16 38 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.11 0.23 7.87 -2.39 -0.02 0.21 16 41 H 0.10 0.11 8.14 -2.38 -0.02 0.09 16 42 H 0.08 0.35 8.12 -2.39 -0.02 0.33 16 43 H 0.06 0.63 8.12 -2.39 -0.02 0.61 16 44 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 47 H 0.06 1.84 7.92 -2.39 -0.02 1.82 16 48 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -89.57 390.96 1.47 -88.11 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -0.40 Total: 17.75 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 5.02 Total: -7.16 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -5.01 Total: -128.91 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.05 Total: -17.58 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.90 Total: 47.78 kcal Total: -89.57 1.47 -88.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100684996.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.555 kcal (2) G-P(sol) polarization free energy of solvation -89.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds