Wall clock time and date at job start Tue Mar 31 2020 18:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86795 * 119.99647 * 2 1 4 4 H 1.48502 * 109.47310 * 269.99819 * 3 2 1 5 5 H 1.48504 * 109.47223 * 30.00143 * 3 2 1 6 6 H 1.48500 * 109.47110 * 149.99670 * 3 2 1 7 7 C 1.38812 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99925 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99868 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00058 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47705 * 179.97438 * 10 9 7 12 12 C 1.35348 * 126.75026 * 94.99599 * 11 10 9 13 13 N 1.35317 * 106.17735 * 179.78015 * 12 11 10 14 14 C 1.46497 * 125.87010 * 180.24864 * 13 12 11 15 15 C 1.53943 * 113.73971 * 13.74629 * 14 13 12 16 16 N 1.47823 * 86.03349 * 222.08124 * 15 14 13 17 17 C 1.34772 * 134.45467 * 204.64025 * 16 15 14 18 18 O 1.21285 * 119.99343 * 179.86711 * 17 16 15 19 19 C 1.50702 * 120.00229 * 359.87119 * 17 16 15 20 20 C 1.52991 * 109.47062 * 299.99775 * 19 17 16 21 21 C 1.52997 * 109.47154 * 180.02562 * 20 19 17 22 22 C 1.52998 * 109.47483 * 59.99932 * 21 20 19 23 23 C 1.53005 * 109.46944 * 300.00161 * 22 21 20 24 24 C 1.53003 * 109.47099 * 59.99949 * 23 22 21 25 25 C 1.47583 * 91.04930 * 24.54682 * 16 15 14 26 26 N 1.28721 * 108.26102 * 0.22816 * 13 12 11 27 27 N 1.28636 * 110.17709 * 0.02562 * 26 13 12 28 28 H 0.96999 * 120.00192 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00636 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46926 * 59.99522 * 10 9 7 31 31 H 1.09001 * 109.47077 * 300.00394 * 10 9 7 32 32 H 1.08002 * 126.91502 * 0.05047 * 12 11 10 33 33 H 1.09000 * 112.94150 * 145.33259 * 14 13 12 34 34 H 1.08999 * 113.77076 * 336.34281 * 15 14 13 35 35 H 1.08999 * 113.77225 * 107.74877 * 15 14 13 36 36 H 1.09005 * 109.47068 * 60.00017 * 19 17 16 37 37 H 1.09005 * 109.47376 * 300.00053 * 20 19 17 38 38 H 1.09003 * 109.47528 * 59.99786 * 20 19 17 39 39 H 1.08999 * 109.47188 * 299.99532 * 21 20 19 40 40 H 1.09009 * 109.47218 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.47123 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.46743 * 59.99795 * 22 21 20 43 43 H 1.09003 * 109.47023 * 300.00191 * 23 22 21 44 44 H 1.08995 * 109.47228 * 179.97438 * 23 22 21 45 45 H 1.08995 * 109.46811 * 180.02562 * 24 23 22 46 46 H 1.08996 * 109.46924 * 59.99549 * 24 23 22 47 47 H 1.08990 * 113.76862 * 221.15095 * 25 16 15 48 48 H 1.09004 * 113.76859 * 89.75186 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0790 -4.8022 0.0012 12 6 0.6242 -5.4794 -1.0789 13 7 -0.2265 -6.4186 -0.6042 14 6 -0.9611 -7.3972 -1.4098 15 6 -0.4518 -7.5154 -2.8577 16 7 -1.8771 -7.5636 -3.2465 17 6 -2.5515 -8.0632 -4.3010 18 8 -3.7584 -7.9560 -4.3548 19 6 -1.8060 -8.7551 -5.4130 20 6 -0.8075 -7.7808 -6.0409 21 6 -0.0510 -8.4831 -7.1703 22 6 -1.0445 -8.9520 -8.2351 23 6 -2.0431 -9.9264 -7.6071 24 6 -2.7996 -9.2240 -6.4778 25 6 -2.2651 -6.8473 -2.0158 26 7 -0.2790 -6.3048 0.6769 27 7 0.4856 -5.3474 1.0690 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3881 0.0005 30 1 2.6849 -3.7144 0.8905 31 1 2.6849 -3.7145 -0.8894 32 1 0.8903 -5.3079 -2.1114 33 1 -1.0813 -8.3568 -0.9071 34 1 0.0708 -6.6274 -3.2135 35 1 0.0910 -8.4390 -3.0585 36 1 -1.2706 -9.6155 -5.0111 37 1 -1.3428 -6.9205 -6.4427 38 1 -0.0999 -7.4464 -5.2822 39 1 0.4844 -9.3435 -6.7689 40 1 0.6608 -7.7890 -7.6174 41 1 -0.5056 -9.4527 -9.0395 42 1 -1.5799 -8.0915 -8.6365 43 1 -1.5078 -10.7868 -7.2057 44 1 -2.7512 -10.2601 -8.3656 45 1 -3.5107 -9.9183 -6.0302 46 1 -3.3349 -8.3636 -6.8792 47 1 -3.1672 -7.2386 -1.5457 48 1 -2.2762 -5.7627 -2.1237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105139335.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:33 Heat of formation + Delta-G solvation = 101.596939 kcal Electronic energy + Delta-G solvation = -28263.768290 eV Core-core repulsion = 24357.157454 eV Total energy + Delta-G solvation = -3906.610836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.15132 -41.00255 -39.11004 -37.60958 -35.02269 -33.56896 -31.97801 -31.74403 -31.20182 -29.97696 -29.18889 -27.02617 -25.90853 -24.64941 -23.23621 -22.92318 -22.83237 -21.12921 -20.74132 -20.24575 -19.44949 -17.94308 -17.55274 -17.05305 -16.67692 -16.10632 -15.67822 -15.11033 -14.96412 -14.65247 -14.59944 -14.40531 -14.21716 -13.88208 -13.66596 -13.32473 -13.30138 -13.05857 -12.91809 -12.69645 -12.63883 -12.55498 -12.10899 -11.83321 -11.73276 -11.59305 -11.30737 -11.10269 -10.91764 -10.90663 -10.81664 -10.59431 -10.52668 -10.11996 -10.06401 -9.92728 -9.74853 -9.31191 -8.93410 -8.88051 -6.93336 -5.74933 -3.04899 1.68027 1.89298 2.12452 2.61718 2.84397 3.44415 3.44956 3.50267 3.52415 3.66103 4.08349 4.19432 4.21081 4.27944 4.51038 4.60639 4.63632 4.68526 4.71292 4.72364 4.80367 4.89815 4.95789 5.01721 5.08825 5.09591 5.15891 5.20367 5.31990 5.38216 5.43519 5.54982 5.59725 5.60446 5.64419 5.70632 5.75144 5.76507 5.83916 5.98178 6.15070 6.34368 6.60699 6.65410 6.74349 7.07700 7.68064 7.70088 8.42120 8.76174 9.53981 10.09225 10.44915 11.47727 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.002338 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.947656 B =11974.877494 C =12942.322853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.240 4.240 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.232 3.768 11 C 0.000 4.000 12 C -0.046 4.046 13 N -0.295 5.295 14 C 0.113 3.887 15 C 0.099 3.901 16 N -0.643 5.643 17 C 0.547 3.453 18 O -0.529 6.529 19 C -0.099 4.099 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.101 4.101 25 C 0.103 3.897 26 N -0.090 5.090 27 N -0.250 5.250 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.188 0.812 33 H 0.145 0.855 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.101 0.899 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 -24.465 -16.137 29.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.103 3.897 11 C -0.137 4.137 12 C -0.196 4.196 13 N -0.089 5.089 14 C 0.009 3.991 15 C -0.025 4.025 16 N -0.381 5.381 17 C 0.337 3.663 18 O -0.404 6.404 19 C -0.120 4.120 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.157 4.157 24 C -0.139 4.139 25 C -0.020 4.020 26 N -0.069 5.069 27 N -0.118 5.118 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.205 0.795 33 H 0.163 0.837 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.119 0.881 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.282 -24.932 -15.041 29.206 hybrid contribution 0.485 1.362 -0.991 1.753 sum -1.796 -23.569 -16.032 28.561 Atomic orbital electron populations 1.69681 1.05178 1.25695 1.57440 1.24768 0.95525 0.97750 1.02873 0.86158 0.78671 0.83707 0.77447 1.21738 1.21787 1.20647 1.19218 0.91088 0.83788 1.43039 0.90864 1.42302 1.05976 0.99243 1.89553 1.18965 0.90042 0.81373 0.99345 1.22493 1.02319 1.00595 0.88332 1.23305 0.99123 0.95141 1.02061 1.47116 1.30924 1.24230 1.06668 1.23690 0.92538 0.92811 0.90074 1.23710 0.84786 1.04616 0.89363 1.49739 1.08719 1.57962 1.21668 1.20461 0.87324 0.77866 0.80642 1.90743 1.14192 1.58215 1.77257 1.21327 0.97658 0.99128 0.93884 1.21587 0.97324 0.97895 0.98357 1.21521 0.97743 1.00363 0.95838 1.21580 0.97238 0.99429 0.97833 1.21559 0.98213 0.98201 0.97698 1.21379 0.96696 1.01161 0.94616 1.23612 0.97602 0.99062 0.81768 1.78310 1.19491 1.16916 0.92135 1.75132 1.06394 1.03993 1.26251 0.93485 0.78106 0.94251 0.94436 0.79493 0.83725 0.87800 0.87779 0.88438 0.91153 0.91310 0.91704 0.91342 0.91817 0.91770 0.91884 0.91533 0.91164 0.91043 0.88095 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.63 5.59 -61.09 -0.34 -18.98 16 10 C 0.23 4.70 6.82 -5.20 -0.04 4.66 16 11 C 0.00 0.00 6.61 -82.78 -0.55 -0.54 16 12 C -0.05 -0.63 10.72 -17.05 -0.18 -0.81 16 13 N -0.29 -3.70 3.54 -56.30 -0.20 -3.90 16 14 C 0.11 0.91 5.14 -70.15 -0.36 0.55 16 15 C 0.10 0.56 6.27 -2.83 -0.02 0.54 16 16 N -0.64 -5.34 3.57 -178.33 -0.64 -5.97 16 17 C 0.55 5.44 7.38 -10.99 -0.08 5.35 16 18 O -0.53 -7.48 16.71 5.55 0.09 -7.39 16 19 C -0.10 -0.67 2.36 -91.77 -0.22 -0.88 16 20 C -0.11 -0.67 5.08 -26.74 -0.14 -0.80 16 21 C -0.12 -0.56 5.92 -26.73 -0.16 -0.72 16 22 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 23 C -0.12 -0.63 5.92 -26.73 -0.16 -0.79 16 24 C -0.10 -0.72 4.49 -26.73 -0.12 -0.84 16 25 C 0.10 0.95 8.64 -2.97 -0.03 0.92 16 26 N -0.09 -1.50 13.17 60.35 0.79 -0.71 16 27 N -0.25 -4.89 12.41 33.29 0.41 -4.48 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.39 10.71 7.66 -40.82 -0.31 10.40 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.19 1.86 6.73 -52.49 -0.35 1.51 16 33 H 0.15 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 0.54 6.13 -51.93 -0.32 0.22 16 35 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.34 6.14 -51.93 -0.32 0.02 16 39 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 46 H 0.07 0.62 8.10 -51.93 -0.42 0.19 16 47 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -36.07 388.68 -8.37 -44.45 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.61 Total: 3.08 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.44 Total: -1.46 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 0.75 Total: -61.88 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.09 Total: -7.39 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.07 -8.37 -44.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105139335.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.042 kcal (2) G-P(sol) polarization free energy of solvation -36.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds