Wall clock time and date at job start Tue Mar 31 2020 18:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86795 * 119.99647 * 2 1 4 4 H 1.48502 * 109.47310 * 269.99819 * 3 2 1 5 5 H 1.48504 * 109.47223 * 30.00143 * 3 2 1 6 6 H 1.48500 * 109.47110 * 149.99670 * 3 2 1 7 7 C 1.38812 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99925 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99868 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00058 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47705 * 179.97438 * 10 9 7 12 12 C 1.35348 * 126.75026 * 94.99599 * 11 10 9 13 13 N 1.35317 * 106.17735 * 179.78015 * 12 11 10 14 14 C 1.46497 * 125.87010 * 180.24864 * 13 12 11 15 15 C 1.53943 * 113.73971 * 13.74629 * 14 13 12 16 16 N 1.47823 * 86.03349 * 222.08124 * 15 14 13 17 17 C 1.34772 * 134.45467 * 204.64025 * 16 15 14 18 18 O 1.21285 * 119.99343 * 179.86711 * 17 16 15 19 19 C 1.50702 * 120.00229 * 359.87119 * 17 16 15 20 20 C 1.52991 * 109.47062 * 299.99775 * 19 17 16 21 21 C 1.52997 * 109.47154 * 180.02562 * 20 19 17 22 22 C 1.52998 * 109.47483 * 59.99932 * 21 20 19 23 23 C 1.53005 * 109.46944 * 300.00161 * 22 21 20 24 24 C 1.53003 * 109.47099 * 59.99949 * 23 22 21 25 25 C 1.47583 * 91.04930 * 24.54682 * 16 15 14 26 26 N 1.28721 * 108.26102 * 0.22816 * 13 12 11 27 27 N 1.28636 * 110.17709 * 0.02562 * 26 13 12 28 28 H 0.96999 * 120.00192 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00636 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46926 * 59.99522 * 10 9 7 31 31 H 1.09001 * 109.47077 * 300.00394 * 10 9 7 32 32 H 1.08002 * 126.91502 * 0.05047 * 12 11 10 33 33 H 1.09000 * 112.94150 * 145.33259 * 14 13 12 34 34 H 1.08999 * 113.77076 * 336.34281 * 15 14 13 35 35 H 1.08999 * 113.77225 * 107.74877 * 15 14 13 36 36 H 1.09005 * 109.47068 * 60.00017 * 19 17 16 37 37 H 1.09005 * 109.47376 * 300.00053 * 20 19 17 38 38 H 1.09003 * 109.47528 * 59.99786 * 20 19 17 39 39 H 1.08999 * 109.47188 * 299.99532 * 21 20 19 40 40 H 1.09009 * 109.47218 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.47123 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.46743 * 59.99795 * 22 21 20 43 43 H 1.09003 * 109.47023 * 300.00191 * 23 22 21 44 44 H 1.08995 * 109.47228 * 179.97438 * 23 22 21 45 45 H 1.08995 * 109.46811 * 180.02562 * 24 23 22 46 46 H 1.08996 * 109.46924 * 59.99549 * 24 23 22 47 47 H 1.08990 * 113.76862 * 221.15095 * 25 16 15 48 48 H 1.09004 * 113.76859 * 89.75186 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0790 -4.8022 0.0012 12 6 0.6242 -5.4794 -1.0789 13 7 -0.2265 -6.4186 -0.6042 14 6 -0.9611 -7.3972 -1.4098 15 6 -0.4518 -7.5154 -2.8577 16 7 -1.8771 -7.5636 -3.2465 17 6 -2.5515 -8.0632 -4.3010 18 8 -3.7584 -7.9560 -4.3548 19 6 -1.8060 -8.7551 -5.4130 20 6 -0.8075 -7.7808 -6.0409 21 6 -0.0510 -8.4831 -7.1703 22 6 -1.0445 -8.9520 -8.2351 23 6 -2.0431 -9.9264 -7.6071 24 6 -2.7996 -9.2240 -6.4778 25 6 -2.2651 -6.8473 -2.0158 26 7 -0.2790 -6.3048 0.6769 27 7 0.4856 -5.3474 1.0690 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3881 0.0005 30 1 2.6849 -3.7144 0.8905 31 1 2.6849 -3.7145 -0.8894 32 1 0.8903 -5.3079 -2.1114 33 1 -1.0813 -8.3568 -0.9071 34 1 0.0708 -6.6274 -3.2135 35 1 0.0910 -8.4390 -3.0585 36 1 -1.2706 -9.6155 -5.0111 37 1 -1.3428 -6.9205 -6.4427 38 1 -0.0999 -7.4464 -5.2822 39 1 0.4844 -9.3435 -6.7689 40 1 0.6608 -7.7890 -7.6174 41 1 -0.5056 -9.4527 -9.0395 42 1 -1.5799 -8.0915 -8.6365 43 1 -1.5078 -10.7868 -7.2057 44 1 -2.7512 -10.2601 -8.3656 45 1 -3.5107 -9.9183 -6.0302 46 1 -3.3349 -8.3636 -6.8792 47 1 -3.1672 -7.2386 -1.5457 48 1 -2.2762 -5.7627 -2.1237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105139335.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:32 Heat of formation + Delta-G solvation = 76.374073 kcal Electronic energy + Delta-G solvation = -28264.862036 eV Core-core repulsion = 24357.157454 eV Total energy + Delta-G solvation = -3907.704582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.31494 -41.72229 -39.75486 -38.28876 -36.78872 -34.80307 -33.58755 -32.42507 -31.65339 -31.62162 -29.95573 -27.86360 -27.39950 -25.51594 -24.74070 -23.88345 -23.40527 -22.33117 -21.74039 -20.74494 -20.11220 -19.38868 -18.62912 -18.17171 -17.49411 -17.10509 -16.58315 -16.41434 -15.98866 -15.71430 -15.48689 -15.15779 -15.08081 -15.00817 -14.77380 -14.53896 -14.26080 -13.93935 -13.89895 -13.65130 -13.38396 -13.20360 -13.07156 -12.95801 -12.77002 -12.64836 -12.48853 -12.26476 -12.08056 -12.04299 -11.86611 -11.80677 -11.57570 -11.35781 -11.05979 -11.00942 -10.94016 -10.75910 -10.21464 -10.02208 -8.99969 -7.92090 -5.22085 0.56647 1.06611 1.38603 1.46854 1.52681 1.53376 1.61941 1.84690 2.60767 2.76536 3.01584 3.38325 3.43624 3.54897 3.67361 3.71564 3.77490 3.95282 4.04277 4.16242 4.20771 4.25062 4.26419 4.28398 4.33550 4.39004 4.44541 4.50360 4.53713 4.57802 4.61676 4.66099 4.71263 4.89818 4.97932 5.11566 5.15147 5.16889 5.21082 5.24886 5.25643 5.35345 5.41354 5.53190 5.56191 5.64354 6.27716 6.39374 6.93919 7.34648 7.52104 8.06913 8.31690 9.31859 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.002338 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.947656 B =11974.877494 C =12942.322853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.080 4.080 3 Si 0.978 3.022 4 H -0.283 1.283 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.240 4.240 8 H 0.086 0.914 9 N -0.740 5.740 10 C 0.234 3.766 11 C -0.035 4.035 12 C -0.016 4.016 13 N -0.277 5.277 14 C 0.111 3.889 15 C 0.109 3.891 16 N -0.640 5.640 17 C 0.542 3.458 18 O -0.583 6.583 19 C -0.090 4.090 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.125 4.125 23 C -0.114 4.114 24 C -0.101 4.101 25 C 0.093 3.907 26 N -0.108 5.108 27 N -0.297 5.297 28 H 0.249 0.751 29 H 0.370 0.630 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.230 0.770 33 H 0.168 0.832 34 H 0.117 0.883 35 H 0.147 0.853 36 H 0.127 0.873 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.046 0.954 47 H 0.095 0.905 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.625 -26.307 -17.868 31.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.272 4.272 3 Si 0.806 3.194 4 H -0.210 1.210 5 H -0.228 1.228 6 H -0.191 1.191 7 C -0.371 4.371 8 H 0.104 0.896 9 N -0.383 5.383 10 C 0.106 3.894 11 C -0.173 4.173 12 C -0.167 4.167 13 N -0.071 5.071 14 C 0.009 3.991 15 C -0.013 4.013 16 N -0.376 5.376 17 C 0.334 3.666 18 O -0.462 6.462 19 C -0.111 4.111 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.163 4.163 23 C -0.151 4.151 24 C -0.139 4.139 25 C -0.031 4.031 26 N -0.086 5.086 27 N -0.164 5.164 28 H 0.058 0.942 29 H 0.201 0.799 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.247 0.753 33 H 0.185 0.815 34 H 0.135 0.865 35 H 0.165 0.835 36 H 0.145 0.855 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.114 0.886 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.409 -26.830 -16.762 31.638 hybrid contribution -0.389 1.820 -0.485 1.923 sum 0.021 -25.010 -17.246 30.380 Atomic orbital electron populations 1.69859 1.06912 1.25989 1.59758 1.25638 0.96346 1.01372 1.03806 0.85077 0.77647 0.79092 0.77557 1.20975 1.22817 1.19111 1.19701 0.91835 0.84746 1.40819 0.89587 1.42532 1.05469 1.00781 1.89494 1.19007 0.90382 0.80116 0.99854 1.22298 1.03828 1.01467 0.89725 1.23743 0.97027 0.93265 1.02683 1.47405 1.29831 1.24043 1.05850 1.24125 0.91617 0.92254 0.91118 1.23993 0.83413 1.07425 0.86484 1.49747 1.10148 1.56922 1.20783 1.21124 0.86904 0.77388 0.81195 1.90721 1.16667 1.60339 1.78430 1.21366 0.97374 0.99899 0.92474 1.21597 0.97149 0.97026 0.99145 1.21519 0.97458 1.00957 0.95151 1.21601 0.97294 0.98990 0.98391 1.21530 0.98189 0.98464 0.96919 1.21354 0.96911 1.00136 0.95508 1.23576 0.98307 0.98343 0.82873 1.78206 1.19594 1.16752 0.94079 1.75061 1.07851 1.05439 1.28046 0.94192 0.79914 0.95334 0.91495 0.75346 0.81502 0.86498 0.83507 0.85528 0.93264 0.89629 0.89943 0.90939 0.90743 0.93081 0.90345 0.91571 0.92372 0.93507 0.88623 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.96 13.06 21.65 0.28 -60.68 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 3 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 8 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.74 -38.05 5.59 -347.18 -1.94 -40.00 16 10 C 0.23 9.28 6.82 85.63 0.58 9.86 16 11 C -0.03 -1.22 6.61 41.59 0.28 -0.95 16 12 C -0.02 -0.39 10.72 83.49 0.89 0.51 16 13 N -0.28 -6.34 3.54 -332.05 -1.18 -7.51 16 14 C 0.11 1.45 5.14 46.75 0.24 1.69 16 15 C 0.11 0.73 6.27 86.44 0.54 1.28 16 16 N -0.64 -9.17 3.57 -836.51 -2.99 -12.15 16 17 C 0.54 10.16 7.38 87.66 0.65 10.81 16 18 O -0.58 -16.94 16.71 -3.04 -0.05 -16.99 16 19 C -0.09 -1.01 2.36 -11.54 -0.03 -1.03 16 20 C -0.11 -0.99 5.08 30.59 0.16 -0.83 16 21 C -0.11 -0.70 5.92 30.59 0.18 -0.52 16 22 C -0.13 -1.00 5.92 30.60 0.18 -0.82 16 23 C -0.11 -0.98 5.92 30.60 0.18 -0.80 16 24 C -0.10 -1.39 4.49 30.60 0.14 -1.25 16 25 C 0.09 1.62 8.64 86.48 0.75 2.37 16 26 N -0.11 -3.52 13.17 37.02 0.49 -3.03 16 27 N -0.30 -11.66 12.41 -48.60 -0.60 -12.26 16 28 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.37 20.99 7.66 -92.71 -0.71 20.28 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.23 3.43 6.73 -2.91 -0.02 3.41 16 33 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.12 0.57 6.13 -2.39 -0.01 0.56 16 35 H 0.15 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.13 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.05 0.65 8.14 -2.38 -0.02 0.64 16 38 H 0.09 0.46 6.14 -2.39 -0.01 0.45 16 39 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 41 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 46 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 47 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -82.72 388.68 2.34 -80.38 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.26 Total: 20.38 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 6.05 Total: 3.74 kcal Atomic # 7 Polarization: -129.70 SS G_CDS: -5.94 Total: -135.64 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.05 Total: -16.99 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -82.72 2.34 -80.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105139335.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.756 kcal (2) G-P(sol) polarization free energy of solvation -82.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds