Wall clock time and date at job start Tue Mar 31 2020 18:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53947 * 113.74330 * 14.03356 * 14 13 12 16 16 N 1.47807 * 86.03671 * 222.08595 * 15 14 13 17 17 C 1.34784 * 134.45239 * 204.64200 * 16 15 14 18 18 O 1.21279 * 119.99539 * 179.86985 * 17 16 15 19 19 C 1.50695 * 120.00127 * 359.87039 * 17 16 15 20 20 C 1.52996 * 109.47121 * 179.97438 * 19 17 16 21 21 C 1.54261 * 110.03470 * 292.16874 * 20 19 17 22 22 C 1.54892 * 104.19521 * 217.10433 * 21 20 19 23 23 C 1.54891 * 102.74932 * 37.93988 * 22 21 20 24 24 C 1.53876 * 110.03286 * 174.99922 * 20 19 17 25 25 C 1.47576 * 91.05211 * 24.54811 * 16 15 14 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 32 32 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 33 33 H 1.09000 * 112.94374 * 145.62885 * 14 13 12 34 34 H 1.09002 * 113.76976 * 336.35198 * 15 14 13 35 35 H 1.08999 * 113.76656 * 107.74318 * 15 14 13 36 36 H 1.08996 * 109.47203 * 299.99731 * 19 17 16 37 37 H 1.08998 * 109.47239 * 59.99836 * 19 17 16 38 38 H 1.09006 * 110.01408 * 53.60961 * 20 19 17 39 39 H 1.09002 * 110.48482 * 335.77951 * 21 20 19 40 40 H 1.08998 * 110.49187 * 98.42846 * 21 20 19 41 41 H 1.08999 * 110.75576 * 279.62605 * 22 21 20 42 42 H 1.09007 * 110.91467 * 156.32905 * 22 21 20 43 43 H 1.09003 * 110.48437 * 203.37761 * 23 22 21 44 44 H 1.09006 * 110.48378 * 80.73417 * 23 22 21 45 45 H 1.09003 * 110.03281 * 238.57286 * 24 20 19 46 46 H 1.09001 * 110.03510 * 359.97438 * 24 20 19 47 47 H 1.09000 * 113.76645 * 221.14620 * 25 16 15 48 48 H 1.09000 * 113.87057 * 89.76846 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.5937 -2.1954 -0.0115 12 6 6.4103 -2.1384 1.0664 13 7 7.6475 -1.8703 0.5883 14 6 8.8639 -1.7201 1.3907 15 6 8.7180 -2.2243 2.8379 16 7 9.4682 -1.0118 3.2273 17 6 10.2398 -0.6768 4.2805 18 8 10.7457 0.4240 4.3356 19 6 10.4737 -1.6700 5.3894 20 6 11.3776 -1.0434 6.4529 21 6 12.7953 -0.8308 5.8831 22 6 13.7344 -1.1430 7.0746 23 6 13.0252 -2.3340 7.7658 24 6 11.5239 -1.9992 7.6500 25 6 9.0353 -0.3166 1.9996 26 7 7.5709 -1.7651 -0.6923 27 7 6.3594 -1.9536 -1.0814 28 1 -0.4851 0.8401 0.0004 29 1 3.8646 -0.3620 0.0004 30 1 3.8521 -3.0451 0.8825 31 1 3.8454 -3.0397 -0.8974 32 1 6.1310 -2.2805 2.1000 33 1 9.7552 -2.0907 0.8846 34 1 7.6888 -2.2383 3.1966 35 1 9.2510 -3.1544 3.0349 36 1 9.5194 -1.9442 5.8389 37 1 10.9537 -2.5607 4.9841 38 1 10.9607 -0.0921 6.7835 39 1 12.9825 -1.5195 5.0592 40 1 12.9242 0.2009 5.5560 41 1 13.8004 -0.2888 7.7485 42 1 14.7246 -1.4338 6.7237 43 1 13.3220 -2.3992 8.8126 44 1 13.2496 -3.2654 7.2459 45 1 11.1787 -1.5114 8.5616 46 1 10.9505 -2.9093 7.4735 47 1 9.8214 0.2736 1.5287 48 1 8.0998 0.2318 2.1098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105142404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:36 Heat of formation + Delta-G solvation = 109.784839 kcal Electronic energy + Delta-G solvation = -27807.797302 eV Core-core repulsion = 23901.541520 eV Total energy + Delta-G solvation = -3906.255782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.29381 -40.91033 -39.20595 -37.74354 -35.24104 -33.66829 -32.19636 -31.92362 -30.40243 -29.60621 -29.09184 -27.24458 -26.43486 -25.84360 -23.89344 -22.48276 -21.32048 -21.12585 -20.82377 -20.11132 -19.47972 -18.26077 -17.73592 -17.39184 -16.72278 -16.37740 -15.76723 -15.56923 -15.28769 -14.97976 -14.54120 -14.32386 -14.10821 -13.78606 -13.76562 -13.64227 -13.43755 -13.09434 -12.89480 -12.73182 -12.55120 -12.25063 -11.92101 -11.68946 -11.62115 -11.52982 -11.39026 -11.23931 -11.14920 -11.04517 -10.89735 -10.87157 -10.67306 -10.25682 -10.18673 -10.03293 -9.60754 -9.39437 -9.10136 -8.91829 -7.25619 -5.77354 -3.13361 1.53959 1.78585 2.07040 2.50996 2.68160 3.34941 3.38493 3.43631 3.47239 3.61241 4.03178 4.12821 4.13925 4.21944 4.30963 4.50430 4.59976 4.61499 4.69271 4.71132 4.76643 4.94329 4.97562 5.02022 5.03297 5.09012 5.19085 5.20281 5.24098 5.30039 5.32545 5.40000 5.49069 5.51481 5.57336 5.63128 5.68939 5.69822 5.86579 5.88863 6.03157 6.18456 6.50451 6.51724 6.62840 6.99768 7.61921 7.96721 8.41147 8.61291 9.19036 9.91622 10.11184 11.40621 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.002118 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.358736 B =13216.150765 C =13799.523504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.094 0.906 9 N -0.750 5.750 10 C 0.237 3.763 11 C -0.007 4.007 12 C -0.046 4.046 13 N -0.295 5.295 14 C 0.112 3.888 15 C 0.099 3.901 16 N -0.647 5.647 17 C 0.543 3.457 18 O -0.525 6.525 19 C -0.128 4.128 20 C -0.079 4.079 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.122 4.122 25 C 0.103 3.897 26 N -0.089 5.089 27 N -0.251 5.251 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.190 0.810 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.101 0.899 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.718 -8.144 15.849 33.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.188 4.188 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.111 0.889 9 N -0.396 5.396 10 C 0.108 3.892 11 C -0.144 4.144 12 C -0.195 4.195 13 N -0.089 5.089 14 C 0.008 3.992 15 C -0.025 4.025 16 N -0.385 5.385 17 C 0.333 3.667 18 O -0.400 6.400 19 C -0.168 4.168 20 C -0.098 4.098 21 C -0.152 4.152 22 C -0.165 4.165 23 C -0.163 4.163 24 C -0.160 4.160 25 C -0.021 4.021 26 N -0.067 5.067 27 N -0.118 5.118 28 H 0.070 0.930 29 H 0.195 0.805 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.207 0.793 33 H 0.164 0.836 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.119 0.881 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 29.681 -7.305 14.771 33.948 hybrid contribution -0.073 1.067 0.999 1.463 sum 29.607 -6.238 15.769 34.120 Atomic orbital electron populations 1.69692 1.05026 1.25863 1.57377 1.24632 0.95196 0.97138 1.01883 0.86559 0.78990 0.85039 0.77953 1.20929 1.21714 1.20647 1.19031 0.80178 0.94897 1.43305 0.88855 1.42653 1.03935 1.01752 1.91235 1.18933 0.80090 0.89931 1.00221 1.22560 0.99055 1.04426 0.88390 1.23369 0.84215 1.09787 1.02175 1.47156 1.07995 1.47088 1.06692 1.23716 0.86493 0.98743 0.90201 1.23689 0.98838 0.90620 0.89310 1.49788 1.49393 1.17308 1.22014 1.20494 0.76938 0.88516 0.80767 1.90740 1.49233 1.23041 1.77011 1.21846 1.02278 0.98159 0.94512 1.21580 0.95466 0.99067 0.93643 1.22400 0.93316 1.02294 0.97185 1.22530 0.98428 0.98126 0.97450 1.22361 0.94964 0.98413 1.00527 1.22232 0.96808 0.99075 0.97843 1.23581 1.01925 0.94560 0.81998 1.78323 1.16353 1.19802 0.92240 1.75144 0.95890 1.14631 1.26181 0.93004 0.80503 0.93548 0.93355 0.79270 0.83625 0.87808 0.87696 0.88643 0.88661 0.90088 0.92104 0.90818 0.91533 0.91702 0.91753 0.91697 0.91524 0.91561 0.88102 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.20 13.97 55.49 0.78 -28.43 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.62 27.74 -169.99 -4.71 17.90 16 4 H -0.28 -7.31 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.80 6.52 56.52 0.37 -6.44 16 7 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 9 N -0.75 -17.99 5.40 -61.09 -0.33 -18.32 16 10 C 0.24 4.55 6.82 -5.19 -0.04 4.51 16 11 C -0.01 -0.11 6.61 -82.78 -0.55 -0.66 16 12 C -0.05 -0.57 10.72 -17.04 -0.18 -0.75 16 13 N -0.29 -3.42 3.54 -56.31 -0.20 -3.62 16 14 C 0.11 0.80 5.14 -70.15 -0.36 0.44 16 15 C 0.10 0.47 8.00 -2.84 -0.02 0.45 16 16 N -0.65 -4.77 3.61 -178.35 -0.64 -5.41 16 17 C 0.54 4.80 7.84 -10.98 -0.09 4.71 16 18 O -0.53 -6.72 15.56 5.56 0.09 -6.63 16 19 C -0.13 -0.71 4.58 -27.89 -0.13 -0.84 16 20 C -0.08 -0.51 2.55 -89.51 -0.23 -0.74 16 21 C -0.11 -0.81 5.43 -25.07 -0.14 -0.95 16 22 C -0.13 -0.74 6.91 -24.74 -0.17 -0.91 16 23 C -0.13 -0.62 6.83 -25.07 -0.17 -0.79 16 24 C -0.12 -0.61 6.46 -25.62 -0.17 -0.78 16 25 C 0.10 0.85 8.64 -2.97 -0.03 0.82 16 26 N -0.09 -1.38 13.17 60.35 0.79 -0.59 16 27 N -0.25 -4.61 12.41 33.29 0.41 -4.20 16 28 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 29 H 0.36 8.80 5.52 -40.82 -0.23 8.58 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.19 1.67 6.74 -52.49 -0.35 1.31 16 33 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.44 6.31 -51.93 -0.33 0.11 16 35 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.37 8.00 -51.93 -0.42 -0.05 16 38 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 39 H 0.06 0.41 7.76 -51.93 -0.40 0.01 16 40 H 0.07 0.66 7.66 -51.93 -0.40 0.27 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.27 7.67 -51.93 -0.40 -0.13 16 47 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 390.27 15.07 5.88 5.88 Total: -1.00 -36.50 390.27 -8.05 -44.55 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.60 Total: 1.26 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.51 Total: -2.40 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.81 Total: -60.56 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: 0.09 Total: -6.63 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.50 -8.05 -44.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105142404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.333 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds