Wall clock time and date at job start Tue Mar 31 2020 18:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53947 * 113.74330 * 14.03356 * 14 13 12 16 16 N 1.47807 * 86.03671 * 222.08595 * 15 14 13 17 17 C 1.34784 * 134.45239 * 204.64200 * 16 15 14 18 18 O 1.21279 * 119.99539 * 179.86985 * 17 16 15 19 19 C 1.50695 * 120.00127 * 359.87039 * 17 16 15 20 20 C 1.52996 * 109.47121 * 179.97438 * 19 17 16 21 21 C 1.54261 * 110.03470 * 292.16874 * 20 19 17 22 22 C 1.54892 * 104.19521 * 217.10433 * 21 20 19 23 23 C 1.54891 * 102.74932 * 37.93988 * 22 21 20 24 24 C 1.53876 * 110.03286 * 174.99922 * 20 19 17 25 25 C 1.47576 * 91.05211 * 24.54811 * 16 15 14 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 32 32 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 33 33 H 1.09000 * 112.94374 * 145.62885 * 14 13 12 34 34 H 1.09002 * 113.76976 * 336.35198 * 15 14 13 35 35 H 1.08999 * 113.76656 * 107.74318 * 15 14 13 36 36 H 1.08996 * 109.47203 * 299.99731 * 19 17 16 37 37 H 1.08998 * 109.47239 * 59.99836 * 19 17 16 38 38 H 1.09006 * 110.01408 * 53.60961 * 20 19 17 39 39 H 1.09002 * 110.48482 * 335.77951 * 21 20 19 40 40 H 1.08998 * 110.49187 * 98.42846 * 21 20 19 41 41 H 1.08999 * 110.75576 * 279.62605 * 22 21 20 42 42 H 1.09007 * 110.91467 * 156.32905 * 22 21 20 43 43 H 1.09003 * 110.48437 * 203.37761 * 23 22 21 44 44 H 1.09006 * 110.48378 * 80.73417 * 23 22 21 45 45 H 1.09003 * 110.03281 * 238.57286 * 24 20 19 46 46 H 1.09001 * 110.03510 * 359.97438 * 24 20 19 47 47 H 1.09000 * 113.76645 * 221.14620 * 25 16 15 48 48 H 1.09000 * 113.87057 * 89.76846 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.5937 -2.1954 -0.0115 12 6 6.4103 -2.1384 1.0664 13 7 7.6475 -1.8703 0.5883 14 6 8.8639 -1.7201 1.3907 15 6 8.7180 -2.2243 2.8379 16 7 9.4682 -1.0118 3.2273 17 6 10.2398 -0.6768 4.2805 18 8 10.7457 0.4240 4.3356 19 6 10.4737 -1.6700 5.3894 20 6 11.3776 -1.0434 6.4529 21 6 12.7953 -0.8308 5.8831 22 6 13.7344 -1.1430 7.0746 23 6 13.0252 -2.3340 7.7658 24 6 11.5239 -1.9992 7.6500 25 6 9.0353 -0.3166 1.9996 26 7 7.5709 -1.7651 -0.6923 27 7 6.3594 -1.9536 -1.0814 28 1 -0.4851 0.8401 0.0004 29 1 3.8646 -0.3620 0.0004 30 1 3.8521 -3.0451 0.8825 31 1 3.8454 -3.0397 -0.8974 32 1 6.1310 -2.2805 2.1000 33 1 9.7552 -2.0907 0.8846 34 1 7.6888 -2.2383 3.1966 35 1 9.2510 -3.1544 3.0349 36 1 9.5194 -1.9442 5.8389 37 1 10.9537 -2.5607 4.9841 38 1 10.9607 -0.0921 6.7835 39 1 12.9825 -1.5195 5.0592 40 1 12.9242 0.2009 5.5560 41 1 13.8004 -0.2888 7.7485 42 1 14.7246 -1.4338 6.7237 43 1 13.3220 -2.3992 8.8126 44 1 13.2496 -3.2654 7.2459 45 1 11.1787 -1.5114 8.5616 46 1 10.9505 -2.9093 7.4735 47 1 9.8214 0.2736 1.5287 48 1 8.0998 0.2318 2.1098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105142404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:35 Heat of formation + Delta-G solvation = 84.219041 kcal Electronic energy + Delta-G solvation = -27808.905918 eV Core-core repulsion = 23901.541520 eV Total energy + Delta-G solvation = -3907.364398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.35717 -41.53635 -39.76849 -38.34788 -36.97541 -34.81203 -33.73925 -32.67640 -31.98689 -30.28692 -29.52778 -28.05737 -27.63109 -26.51577 -24.72209 -24.33894 -22.43004 -21.89731 -21.55080 -20.57850 -20.04911 -19.90682 -18.71471 -18.19701 -17.47469 -17.20159 -16.57934 -16.44111 -16.19819 -16.03728 -15.75152 -15.65359 -15.04295 -14.87477 -14.43151 -14.34343 -14.27498 -14.17349 -13.94957 -13.83177 -13.62850 -13.17559 -13.01026 -12.91700 -12.67550 -12.50688 -12.14797 -12.13097 -11.93364 -11.86605 -11.84180 -11.81642 -11.68133 -11.52825 -11.29497 -11.11122 -11.01892 -10.89118 -10.27000 -9.98853 -9.30788 -8.02201 -5.34969 0.53234 1.05687 1.33976 1.39345 1.41607 1.45913 1.46689 1.85614 2.46998 2.77366 3.05479 3.28989 3.39290 3.57228 3.66096 3.70524 3.76968 3.83457 3.85801 3.94706 4.13234 4.20187 4.31810 4.32848 4.38577 4.40998 4.51475 4.51750 4.58721 4.65060 4.66640 4.74710 4.83952 4.86308 4.90293 4.97391 5.10804 5.11629 5.12970 5.16779 5.27459 5.36893 5.50483 5.54035 5.61084 5.76830 6.21485 6.43240 7.00295 7.06511 7.47918 7.81922 8.00618 9.18853 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.002118 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.358736 B =13216.150765 C =13799.523504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.058 4.058 3 Si 0.948 3.052 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.258 1.258 7 C -0.227 4.227 8 H 0.070 0.930 9 N -0.754 5.754 10 C 0.238 3.762 11 C -0.040 4.040 12 C -0.013 4.013 13 N -0.278 5.278 14 C 0.109 3.891 15 C 0.111 3.889 16 N -0.645 5.645 17 C 0.537 3.463 18 O -0.577 6.577 19 C -0.120 4.120 20 C -0.080 4.080 21 C -0.114 4.114 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.117 4.117 25 C 0.094 3.906 26 N -0.107 5.107 27 N -0.295 5.295 28 H 0.258 0.742 29 H 0.362 0.638 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.234 0.766 33 H 0.165 0.835 34 H 0.119 0.881 35 H 0.146 0.854 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.828 -10.014 17.859 37.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.250 4.250 3 Si 0.776 3.224 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.183 1.183 7 C -0.358 4.358 8 H 0.088 0.912 9 N -0.399 5.399 10 C 0.110 3.890 11 C -0.178 4.178 12 C -0.165 4.165 13 N -0.072 5.072 14 C 0.007 3.993 15 C -0.011 4.011 16 N -0.382 5.382 17 C 0.329 3.671 18 O -0.455 6.455 19 C -0.159 4.159 20 C -0.099 4.099 21 C -0.152 4.152 22 C -0.167 4.167 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.031 4.031 26 N -0.085 5.085 27 N -0.162 5.162 28 H 0.067 0.933 29 H 0.194 0.806 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.250 0.750 33 H 0.183 0.817 34 H 0.136 0.864 35 H 0.163 0.837 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.104 0.896 47 H 0.112 0.888 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 31.853 -9.227 16.775 37.164 hybrid contribution -0.638 1.587 0.382 1.752 sum 31.215 -7.640 17.157 36.430 Atomic orbital electron populations 1.69847 1.06772 1.26526 1.59821 1.25356 0.95983 1.00674 1.02977 0.85523 0.78541 0.80679 0.77638 1.21496 1.21858 1.18333 1.19061 0.82117 0.93855 1.40790 0.91226 1.42703 1.02555 1.03648 1.91015 1.18955 0.81669 0.87818 1.00527 1.22265 0.98168 1.07607 0.89807 1.23822 0.83473 1.06326 1.02843 1.47450 1.09107 1.44746 1.05877 1.24149 0.85438 0.98419 0.91287 1.23954 0.99938 0.90924 0.86334 1.49809 1.49025 1.18167 1.21188 1.21162 0.76199 0.88420 0.81337 1.90729 1.51289 1.25365 1.78151 1.21899 1.03338 0.97756 0.92949 1.21548 0.95054 0.98567 0.94743 1.22358 0.94443 1.00568 0.97835 1.22541 0.98616 0.98554 0.96973 1.22367 0.94686 0.98121 1.00824 1.22212 0.97130 0.99311 0.96848 1.23551 1.01241 0.95216 0.83044 1.78234 1.15380 1.20733 0.94178 1.75082 0.97064 1.16203 1.27881 0.93321 0.80608 0.90983 0.94776 0.75017 0.81718 0.86370 0.83652 0.86397 0.85876 0.92706 0.91598 0.93825 0.92286 0.91235 0.91236 0.90656 0.91772 0.89622 0.88816 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.51 13.97 21.65 0.30 -62.21 16 2 C -0.06 -3.43 5.50 84.86 0.47 -2.97 16 3 Si 0.95 46.81 27.74 68.60 1.90 48.71 16 4 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.26 -11.66 6.52 99.48 0.65 -11.02 16 7 C -0.23 -12.83 10.47 84.03 0.88 -11.95 16 8 H 0.07 4.19 8.06 -2.91 -0.02 4.17 16 9 N -0.75 -35.38 5.40 -347.18 -1.87 -37.25 16 10 C 0.24 8.81 6.82 85.63 0.58 9.39 16 11 C -0.04 -1.27 6.61 41.60 0.28 -1.00 16 12 C -0.01 -0.28 10.72 83.49 0.89 0.61 16 13 N -0.28 -5.54 3.54 -332.06 -1.18 -6.71 16 14 C 0.11 1.15 5.14 46.75 0.24 1.39 16 15 C 0.11 0.45 8.00 86.44 0.69 1.14 16 16 N -0.65 -7.44 3.61 -836.56 -3.02 -10.46 16 17 C 0.54 8.37 7.84 87.65 0.69 9.06 16 18 O -0.58 -14.80 15.56 -3.03 -0.05 -14.84 16 19 C -0.12 -0.92 4.58 29.85 0.14 -0.78 16 20 C -0.08 -0.92 2.55 -10.07 -0.03 -0.95 16 21 C -0.11 -1.56 5.43 31.67 0.17 -1.39 16 22 C -0.13 -1.38 6.91 31.89 0.22 -1.16 16 23 C -0.12 -0.91 6.83 31.67 0.22 -0.69 16 24 C -0.12 -0.86 6.46 31.32 0.20 -0.66 16 25 C 0.09 1.35 8.64 86.49 0.75 2.10 16 26 N -0.11 -3.15 13.17 37.02 0.49 -2.67 16 27 N -0.30 -10.57 12.41 -48.60 -0.60 -11.18 16 28 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 29 H 0.36 16.98 5.52 -92.71 -0.51 16.47 16 30 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.23 2.69 6.74 -2.91 -0.02 2.67 16 33 H 0.17 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.12 0.23 6.31 -2.39 -0.02 0.22 16 35 H 0.15 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.12 0.30 8.00 -2.39 -0.02 0.28 16 38 H 0.05 0.91 7.92 -2.38 -0.02 0.89 16 39 H 0.07 0.80 7.76 -2.39 -0.02 0.78 16 40 H 0.04 0.84 7.66 -2.39 -0.02 0.82 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 45 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.09 0.32 7.67 -2.39 -0.02 0.30 16 47 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -83.69 390.27 2.75 -80.94 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.40 Total: 13.51 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 6.39 Total: 2.16 kcal Atomic # 7 Polarization: -124.59 SS G_CDS: -5.89 Total: -130.47 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.05 Total: -14.84 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.90 Total: 48.71 kcal Total: -83.69 2.75 -80.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105142404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.158 kcal (2) G-P(sol) polarization free energy of solvation -83.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds