Wall clock time and date at job start Tue Mar 31 2020 18:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53947 * 113.74330 * 14.03356 * 14 13 12 16 16 N 1.47807 * 86.03671 * 222.08595 * 15 14 13 17 17 C 1.34784 * 134.45239 * 204.64200 * 16 15 14 18 18 O 1.21279 * 119.99539 * 179.86985 * 17 16 15 19 19 C 1.50695 * 120.00127 * 359.87039 * 17 16 15 20 20 C 1.52996 * 109.47121 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.47249 * 179.97438 * 20 19 17 22 22 C 1.52996 * 109.47249 * 179.97438 * 21 20 19 23 23 C 1.53006 * 117.50300 * 243.62713 * 22 21 20 24 24 C 1.53002 * 60.00020 * 252.51025 * 23 22 21 25 25 C 1.47576 * 91.05211 * 24.54811 * 16 15 14 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 32 32 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 33 33 H 1.09000 * 112.94374 * 145.62885 * 14 13 12 34 34 H 1.09002 * 113.76976 * 336.35198 * 15 14 13 35 35 H 1.08999 * 113.76656 * 107.74318 * 15 14 13 36 36 H 1.08996 * 109.47203 * 299.99731 * 19 17 16 37 37 H 1.08998 * 109.47239 * 59.99836 * 19 17 16 38 38 H 1.08992 * 109.47584 * 299.99968 * 20 19 17 39 39 H 1.09009 * 109.46949 * 60.00419 * 20 19 17 40 40 H 1.08996 * 109.47479 * 300.00295 * 21 20 19 41 41 H 1.09006 * 109.46945 * 60.00634 * 21 20 19 42 42 H 1.09002 * 115.55086 * 29.33462 * 22 21 20 43 43 H 1.09002 * 117.49586 * 359.97438 * 23 22 21 44 44 H 1.08999 * 117.50095 * 145.02126 * 23 22 21 45 45 H 1.09000 * 117.49632 * 252.51381 * 24 23 22 46 46 H 1.09000 * 117.50112 * 107.48487 * 24 23 22 47 47 H 1.09000 * 113.76645 * 221.14620 * 25 16 15 48 48 H 1.09000 * 113.87057 * 89.76846 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6204 -5.4811 -1.0649 13 7 -0.2302 -6.4183 -0.5863 14 6 -0.9688 -7.3968 -1.3882 15 6 -0.4598 -7.5229 -2.8356 16 7 -1.8851 -7.5664 -3.2244 17 6 -2.5615 -8.0673 -4.2772 18 8 -3.7678 -7.9550 -4.3318 19 6 -1.8187 -8.7668 -5.3862 20 6 -2.8137 -9.2365 -6.4493 21 6 -2.0596 -9.9462 -7.5756 22 6 -3.0547 -10.4165 -8.6384 23 6 -3.1841 -11.9237 -8.8674 24 6 -2.4844 -11.0489 -9.9095 25 6 -2.2702 -6.8437 -1.9967 26 7 -0.2825 -6.2992 0.6943 27 7 0.4867 -5.3442 1.0829 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6849 -3.7190 -0.8822 31 1 2.6842 -3.7101 0.8977 32 1 0.8827 -5.3105 -2.0986 33 1 -1.0933 -8.3540 -0.8818 34 1 0.0668 -6.6387 -3.1947 35 1 0.0791 -8.4497 -3.0325 36 1 -1.1042 -8.0776 -5.8361 37 1 -1.2872 -9.6278 -4.9809 38 1 -3.5279 -9.9259 -5.9992 39 1 -3.3456 -8.3757 -6.8548 40 1 -1.3456 -9.2565 -8.0257 41 1 -1.5275 -10.8070 -7.1705 42 1 -3.9568 -9.8128 -8.7377 43 1 -2.5600 -12.5803 -8.2612 44 1 -4.1715 -12.3119 -9.1173 45 1 -3.0116 -10.8615 -10.8450 46 1 -1.4003 -11.1299 -9.9886 47 1 -3.1743 -7.2291 -1.5253 48 1 -2.2774 -5.7593 -2.1071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105308120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:42 Heat of formation + Delta-G solvation = 109.278825 kcal Electronic energy + Delta-G solvation = -27023.245169 eV Core-core repulsion = 23116.967445 eV Total energy + Delta-G solvation = -3906.277724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.30638 -41.45949 -39.36474 -38.47885 -36.78091 -34.83055 -34.68562 -33.56513 -31.61711 -30.85265 -28.61089 -27.82510 -27.26134 -25.12734 -24.71136 -23.29136 -22.98792 -22.29368 -21.65793 -21.34008 -19.99358 -19.39326 -18.68368 -18.12001 -17.43892 -16.95487 -16.77877 -16.57313 -16.22247 -16.03232 -15.69782 -15.19383 -15.18253 -15.11780 -14.76743 -14.39616 -14.24148 -13.92695 -13.85116 -13.42903 -13.26714 -13.04285 -12.96459 -12.72995 -12.70236 -12.57604 -12.48736 -12.35398 -12.11645 -11.95941 -11.85877 -11.80683 -11.77117 -11.18108 -11.06120 -10.93097 -10.89653 -10.70699 -10.20927 -9.99493 -8.99486 -7.91496 -5.21584 0.57283 1.08750 1.44708 1.47184 1.53218 1.55136 1.61198 1.87096 2.61345 2.79777 2.93064 3.07395 3.39837 3.46044 3.60966 3.69703 3.72704 3.96053 4.03393 4.06386 4.10825 4.18268 4.18792 4.25589 4.26000 4.34340 4.41490 4.42679 4.52776 4.55978 4.67978 4.74995 4.78673 4.81440 4.89030 4.90191 4.94717 5.10557 5.15583 5.21517 5.25866 5.28107 5.35645 5.50592 5.53273 5.65444 6.28018 6.43465 6.98438 7.35096 7.52575 8.07431 8.32262 9.32117 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014759 B = 0.001807 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.680746 B =15488.273335 C =16507.310123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.978 3.022 4 H -0.271 1.271 5 H -0.300 1.300 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.086 0.914 9 N -0.740 5.740 10 C 0.234 3.766 11 C -0.036 4.036 12 C -0.015 4.015 13 N -0.277 5.277 14 C 0.109 3.891 15 C 0.113 3.887 16 N -0.644 5.644 17 C 0.536 3.464 18 O -0.585 6.585 19 C -0.125 4.125 20 C -0.100 4.100 21 C -0.080 4.080 22 C -0.166 4.166 23 C -0.185 4.185 24 C -0.181 4.181 25 C 0.092 3.908 26 N -0.109 5.109 27 N -0.297 5.297 28 H 0.249 0.751 29 H 0.370 0.630 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.231 0.769 33 H 0.167 0.833 34 H 0.117 0.883 35 H 0.149 0.851 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 -27.768 -18.894 33.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.197 1.197 5 H -0.227 1.227 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.104 0.896 9 N -0.382 5.382 10 C 0.106 3.894 11 C -0.174 4.174 12 C -0.167 4.167 13 N -0.072 5.072 14 C 0.007 3.993 15 C -0.010 4.010 16 N -0.380 5.380 17 C 0.328 3.672 18 O -0.465 6.465 19 C -0.164 4.164 20 C -0.138 4.138 21 C -0.118 4.118 22 C -0.185 4.185 23 C -0.222 4.222 24 C -0.218 4.218 25 C -0.032 4.032 26 N -0.088 5.088 27 N -0.164 5.164 28 H 0.058 0.942 29 H 0.201 0.799 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.248 0.752 33 H 0.184 0.816 34 H 0.135 0.865 35 H 0.167 0.833 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.121 0.879 47 H 0.112 0.888 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.124 -28.287 -17.800 33.441 hybrid contribution -0.348 1.732 -0.488 1.833 sum -1.472 -26.555 -18.289 32.277 Atomic orbital electron populations 1.69853 1.06905 1.26050 1.59606 1.25629 0.96330 1.01340 1.03684 0.85144 0.77061 0.78733 0.78395 1.19674 1.22671 1.20496 1.19678 0.91846 0.84798 1.41116 0.89618 1.42524 1.05451 1.00751 1.89519 1.19004 0.90388 0.80142 0.99825 1.22310 1.03906 1.01477 0.89742 1.23757 0.97016 0.93179 1.02699 1.47419 1.29766 1.24121 1.05845 1.24148 0.91629 0.92156 0.91389 1.23953 0.83199 1.07573 0.86240 1.49812 1.10291 1.56788 1.21146 1.21253 0.87028 0.77485 0.81394 1.90732 1.16848 1.60563 1.78340 1.21721 0.99301 1.02396 0.92978 1.21276 0.97454 0.99959 0.95103 1.21137 0.96521 1.00537 0.93566 1.22402 1.01496 0.95964 0.98592 1.23116 1.02392 0.93188 1.03507 1.23040 1.00976 1.04327 0.93454 1.23555 0.98277 0.98249 0.83127 1.78202 1.19515 1.16793 0.94245 1.75059 1.07759 1.05568 1.28028 0.94200 0.79911 0.91498 0.95388 0.75245 0.81602 0.86491 0.83341 0.86269 0.85570 0.92699 0.93182 0.90440 0.90327 0.88914 0.88036 0.89125 0.88857 0.87908 0.88816 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.78 13.06 21.65 0.28 -60.50 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 3 Si 0.98 46.01 29.55 68.60 2.03 48.04 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.24 -13.45 9.99 84.03 0.84 -12.61 16 8 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.74 -38.04 5.59 -347.18 -1.94 -39.99 16 10 C 0.23 9.29 6.82 85.63 0.58 9.88 16 11 C -0.04 -1.27 6.61 41.60 0.28 -0.99 16 12 C -0.02 -0.37 10.72 83.49 0.89 0.52 16 13 N -0.28 -6.33 3.54 -332.06 -1.18 -7.51 16 14 C 0.11 1.40 5.14 46.75 0.24 1.64 16 15 C 0.11 0.65 8.00 86.44 0.69 1.35 16 16 N -0.64 -8.69 3.61 -836.56 -3.02 -11.71 16 17 C 0.54 9.26 8.06 87.65 0.71 9.96 16 18 O -0.59 -16.44 16.71 -3.03 -0.05 -16.49 16 19 C -0.12 -1.01 5.45 29.85 0.16 -0.85 16 20 C -0.10 -1.18 4.46 30.59 0.14 -1.05 16 21 C -0.08 -0.64 5.50 30.59 0.17 -0.47 16 22 C -0.17 -1.77 5.74 -10.79 -0.06 -1.83 16 23 C -0.19 -1.76 10.18 30.60 0.31 -1.45 16 24 C -0.18 -1.63 10.25 30.60 0.31 -1.32 16 25 C 0.09 1.58 8.64 86.49 0.75 2.33 16 26 N -0.11 -3.57 13.17 37.02 0.49 -3.08 16 27 N -0.30 -11.69 12.41 -48.60 -0.60 -12.29 16 28 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.37 20.98 7.66 -92.71 -0.71 20.27 16 30 H 0.07 2.27 8.14 -2.38 -0.02 2.26 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.23 3.40 6.74 -2.91 -0.02 3.38 16 33 H 0.17 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.12 0.47 6.31 -2.39 -0.02 0.46 16 35 H 0.15 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 39 H 0.05 0.81 8.10 -2.38 -0.02 0.79 16 40 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.08 0.43 7.87 -2.38 -0.02 0.41 16 42 H 0.09 1.18 8.07 -2.39 -0.02 1.16 16 43 H 0.10 0.79 8.03 -2.39 -0.02 0.77 16 44 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -83.76 404.74 2.73 -81.03 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.25 Total: 21.41 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 6.48 Total: 1.08 kcal Atomic # 7 Polarization: -129.10 SS G_CDS: -5.97 Total: -135.07 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.05 Total: -16.49 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -83.76 2.73 -81.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105308120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.308 kcal (2) G-P(sol) polarization free energy of solvation -83.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds