Wall clock time and date at job start Tue Mar 31 2020 18:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99913 * 2 1 4 4 H 1.48494 * 109.47027 * 239.99407 * 3 2 1 5 5 H 1.48498 * 109.47255 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46982 * 119.99772 * 3 2 1 7 7 C 1.38815 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99604 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00048 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47182 * 179.97438 * 10 9 7 12 12 C 1.53006 * 112.84711 * 171.80390 * 11 10 9 13 13 H 1.09003 * 109.58392 * 173.64384 * 12 11 10 14 14 C 1.53189 * 109.58710 * 53.21975 * 12 11 10 15 15 C 1.53040 * 109.31377 * 185.57708 * 14 12 11 16 16 C 1.53040 * 109.53754 * 61.36195 * 15 14 12 17 17 C 1.53195 * 109.31404 * 298.63827 * 16 15 14 18 18 N 1.46921 * 108.77753 * 54.63304 * 17 16 15 19 19 C 1.34771 * 120.63299 * 126.36701 * 18 17 16 20 20 O 1.21616 * 120.00372 * 188.37901 * 19 18 17 21 21 C 1.47238 * 120.00037 * 8.38187 * 19 18 17 22 22 C 1.37005 * 127.19267 * 206.14581 * 21 19 18 23 23 N 1.33315 * 106.37128 * 179.90117 * 22 21 19 24 24 N 1.28509 * 109.44220 * 0.36806 * 23 22 21 25 25 N 1.28710 * 110.63548 * 359.76579 * 24 23 22 26 26 H 0.97012 * 126.03126 * 180.02562 * 25 24 23 27 27 C 1.53782 * 113.61474 * 40.61178 * 11 10 9 28 28 C 1.53956 * 87.01647 * 220.04720 * 27 11 10 29 29 C 1.53780 * 113.61513 * 303.00027 * 11 10 9 30 30 H 0.97002 * 119.99776 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00117 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47200 * 300.00293 * 10 9 7 33 33 H 1.09003 * 109.46971 * 59.99754 * 10 9 7 34 34 H 1.08999 * 109.49758 * 305.52778 * 14 12 11 35 35 H 1.08999 * 109.50094 * 65.62320 * 14 12 11 36 36 H 1.09000 * 109.45951 * 301.34782 * 15 14 12 37 37 H 1.08995 * 109.46606 * 181.38237 * 15 14 12 38 38 H 1.09006 * 109.49987 * 178.68530 * 16 15 14 39 39 H 1.08999 * 109.49980 * 58.58960 * 16 15 14 40 40 H 1.09002 * 109.58313 * 294.84804 * 17 16 15 41 41 H 1.09003 * 109.58701 * 174.42274 * 17 16 15 42 42 H 1.07999 * 126.81182 * 0.02562 * 22 21 19 43 43 H 1.09005 * 113.61166 * 334.55925 * 27 11 10 44 44 H 1.08992 * 113.61666 * 105.46677 * 27 11 10 45 45 H 1.09000 * 113.53628 * 270.81102 * 28 27 11 46 46 H 1.08997 * 113.66928 * 139.92919 * 28 27 11 47 47 H 1.09004 * 113.61096 * 254.53108 * 29 11 10 48 48 H 1.08997 * 113.61451 * 25.43131 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 1.7384 -6.1782 -0.1998 13 1 1.0025 -6.9731 -0.0783 14 6 2.8604 -6.3515 0.8287 15 6 3.6203 -7.6472 0.5352 16 6 4.2496 -7.5672 -0.8575 17 6 3.1433 -7.4076 -1.9051 18 7 2.3181 -6.2456 -1.5482 19 6 2.0976 -5.2599 -2.4404 20 8 1.5441 -4.2352 -2.0902 21 6 2.5269 -5.4235 -3.8393 22 6 2.8451 -4.4318 -4.7294 23 7 3.1772 -5.0410 -5.8678 24 7 3.0716 -6.3130 -5.7188 25 7 2.6860 -6.5994 -4.5247 26 1 2.5350 -7.4905 -4.1721 27 6 -0.1499 -4.5930 -0.9156 28 6 -1.0044 -5.2383 0.1905 29 6 0.0806 -4.7889 1.1833 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6847 -3.7145 -0.8894 33 1 2.6847 -3.7145 0.8905 34 1 3.5453 -5.5059 0.7659 35 1 2.4321 -6.3997 1.8298 36 1 2.9298 -8.4897 0.5738 37 1 4.4037 -7.7855 1.2803 38 1 4.8101 -8.4807 -1.0565 39 1 4.9215 -6.7102 -0.9045 40 1 2.5238 -8.3043 -1.9217 41 1 3.5897 -7.2510 -2.8871 42 1 2.8317 -3.3678 -4.5447 43 1 -0.3782 -3.5407 -1.0856 44 1 -0.1156 -5.1740 -1.8371 45 1 -1.0904 -6.3210 0.0983 46 1 -1.9658 -4.7479 0.3430 47 1 0.3008 -5.5280 1.9536 48 1 -0.0844 -3.7905 1.5880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105546221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:30 Heat of formation + Delta-G solvation = 163.157539 kcal Electronic energy + Delta-G solvation = -31427.105367 eV Core-core repulsion = 27523.163999 eV Total energy + Delta-G solvation = -3903.941368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.47505 -41.37160 -37.94745 -37.57759 -34.03976 -33.82365 -32.79205 -31.76528 -30.98420 -30.63076 -27.11369 -25.72687 -25.39830 -24.07579 -23.63752 -23.21126 -22.28202 -21.76052 -21.21074 -20.22539 -18.51348 -17.36937 -17.11920 -16.79250 -16.42447 -16.21938 -15.39340 -15.01958 -14.72525 -14.52897 -14.33259 -14.22682 -14.19744 -13.94113 -13.59080 -13.35850 -12.81846 -12.52235 -12.30996 -12.15552 -11.99285 -11.71101 -11.44860 -11.35767 -11.24557 -10.99877 -10.91533 -10.86586 -10.72696 -10.65336 -10.51533 -10.06685 -9.99455 -9.65564 -9.51361 -9.39446 -9.35291 -9.07914 -8.67851 -8.37127 -6.62381 -5.60856 -2.84475 0.91369 2.22490 2.33373 2.68514 3.10409 3.52627 3.57030 3.57859 4.09620 4.30954 4.46288 4.55672 4.67903 4.72449 4.78230 4.90452 4.98637 5.04617 5.07281 5.14049 5.23084 5.26398 5.40881 5.42305 5.54778 5.59316 5.66163 5.71353 5.76046 5.88359 5.89560 6.01923 6.05360 6.20968 6.30043 6.34525 6.40474 6.46353 6.52944 6.55208 6.70252 6.78546 7.03914 7.17930 7.20361 7.28466 7.83061 8.13036 8.21544 8.59939 9.70340 10.34864 10.68717 11.62747 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.004973 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.781943 B = 5628.907670 C = 6966.386687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.224 4.224 8 H 0.064 0.936 9 N -0.719 5.719 10 C 0.183 3.817 11 C -0.079 4.079 12 C 0.182 3.818 13 H 0.073 0.927 14 C -0.135 4.135 15 C -0.118 4.118 16 C -0.133 4.133 17 C 0.096 3.904 18 N -0.606 5.606 19 C 0.545 3.455 20 O -0.416 6.416 21 C -0.047 4.047 22 C 0.024 3.976 23 N -0.268 5.268 24 N -0.064 5.064 25 N -0.385 5.385 26 H 0.448 0.552 27 C -0.082 4.082 28 C -0.165 4.165 29 C -0.128 4.128 30 H 0.253 0.747 31 H 0.383 0.617 32 H 0.038 0.962 33 H -0.002 1.002 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.205 0.795 43 H 0.102 0.898 44 H 0.048 0.952 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.923 -21.889 -1.953 22.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.213 4.213 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.356 4.356 8 H 0.082 0.918 9 N -0.363 5.363 10 C 0.056 3.944 11 C -0.079 4.079 12 C 0.080 3.920 13 H 0.091 0.909 14 C -0.174 4.174 15 C -0.156 4.156 16 C -0.171 4.171 17 C -0.028 4.028 18 N -0.343 5.343 19 C 0.329 3.671 20 O -0.284 6.284 21 C -0.181 4.181 22 C -0.134 4.134 23 N -0.134 5.134 24 N -0.046 5.046 25 N -0.114 5.114 26 H 0.297 0.703 27 C -0.119 4.119 28 C -0.202 4.202 29 C -0.166 4.166 30 H 0.062 0.938 31 H 0.219 0.781 32 H 0.055 0.945 33 H 0.015 0.985 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.221 0.779 43 H 0.120 0.880 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.137 -21.579 -3.177 22.408 hybrid contribution -0.083 0.659 1.213 1.383 sum 5.054 -20.920 -1.964 21.611 Atomic orbital electron populations 1.69641 1.04964 1.25322 1.58685 1.24639 0.95426 0.97293 1.03900 0.86337 0.78504 0.84130 0.77667 1.21511 1.21872 1.21614 1.19142 0.90746 0.84455 1.41259 0.91824 1.42350 1.05748 0.99604 1.88645 1.20715 0.92594 0.85055 0.96003 1.22146 0.95644 0.93142 0.96996 1.21009 0.93718 0.97645 0.79667 0.90897 1.22036 0.98090 0.98215 0.99015 1.21516 0.99741 0.97999 0.96306 1.21886 0.97399 1.02716 0.95127 1.21952 0.93096 0.88850 0.98917 1.47761 1.51770 1.21131 1.13634 1.16852 0.83171 0.84840 0.82187 1.91324 1.35861 1.25791 1.75380 1.22676 1.11894 0.86376 0.97192 1.23976 0.99937 1.01572 0.87923 1.74954 1.17569 0.97854 1.23042 1.78153 1.15250 1.11438 0.99775 1.46078 1.45543 1.10108 1.09703 0.70270 1.22971 0.92429 1.02339 0.94197 1.23164 0.98362 0.99242 0.99451 1.22994 0.95867 1.02220 0.95487 0.93765 0.78058 0.94521 0.98451 0.90296 0.90439 0.91935 0.91479 0.90736 0.90994 0.91034 0.90750 0.77854 0.88003 0.93294 0.91844 0.92003 0.92810 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.86 13.06 55.49 0.72 -28.14 16 2 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 3 Si 0.90 23.08 29.55 -169.99 -5.02 18.05 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 7 C -0.22 -6.41 9.99 -15.06 -0.15 -6.56 16 8 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -18.35 4.68 -59.91 -0.28 -18.63 16 10 C 0.18 3.76 3.98 -4.04 -0.02 3.74 16 11 C -0.08 -1.25 0.27 -153.69 -0.04 -1.30 16 12 C 0.18 2.17 2.30 -67.60 -0.16 2.01 16 13 H 0.07 0.79 7.33 -51.93 -0.38 0.40 16 14 C -0.14 -1.44 5.03 -26.61 -0.13 -1.57 16 15 C -0.12 -0.90 5.88 -26.69 -0.16 -1.05 16 16 C -0.13 -0.94 6.08 -26.61 -0.16 -1.10 16 17 C 0.10 0.69 5.36 -3.71 -0.02 0.67 16 18 N -0.61 -6.65 2.96 -166.55 -0.49 -7.14 16 19 C 0.55 7.60 5.76 -12.61 -0.07 7.52 16 20 O -0.42 -7.54 7.95 5.26 0.04 -7.50 16 21 C -0.05 -0.59 6.35 -82.33 -0.52 -1.12 16 22 C 0.02 0.34 11.96 -17.36 -0.21 0.13 16 23 N -0.27 -3.90 12.35 30.47 0.38 -3.52 16 24 N -0.06 -0.81 13.35 60.35 0.81 -0.01 16 25 N -0.38 -3.81 5.72 33.31 0.19 -3.62 16 26 H 0.45 2.75 6.87 -190.32 -1.31 1.45 16 27 C -0.08 -1.41 4.51 -25.83 -0.12 -1.53 16 28 C -0.16 -2.44 7.74 -25.83 -0.20 -2.64 16 29 C -0.13 -2.03 6.92 -25.92 -0.18 -2.20 16 30 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.38 10.31 4.98 -40.82 -0.20 10.10 16 32 H 0.04 0.80 5.20 -53.03 -0.28 0.53 16 33 H 0.00 -0.04 7.04 -51.93 -0.37 -0.41 16 34 H 0.08 1.02 6.51 -51.93 -0.34 0.68 16 35 H 0.08 0.80 7.79 -51.93 -0.40 0.40 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.50 4.56 -51.93 -0.24 0.26 16 42 H 0.20 2.80 8.06 -52.49 -0.42 2.38 16 43 H 0.10 2.22 5.95 -51.93 -0.31 1.91 16 44 H 0.05 0.81 6.15 -51.93 -0.32 0.49 16 45 H 0.06 0.80 7.62 -51.93 -0.40 0.40 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.05 0.73 7.75 -51.93 -0.40 0.32 16 48 H 0.09 1.83 7.23 -51.93 -0.38 1.46 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -33.67 356.57 -8.33 -42.00 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.82 Total: 8.74 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.23 Total: -5.60 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 1.32 Total: -61.06 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.04 Total: -7.50 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.67 -8.33 -42.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105546221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.156 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds