Wall clock time and date at job start Tue Mar 31 2020 18:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99913 * 2 1 4 4 H 1.48494 * 109.47027 * 239.99407 * 3 2 1 5 5 H 1.48498 * 109.47255 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46982 * 119.99772 * 3 2 1 7 7 C 1.38815 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99604 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00048 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47182 * 179.97438 * 10 9 7 12 12 C 1.53006 * 112.84711 * 171.80390 * 11 10 9 13 13 H 1.09003 * 109.58392 * 173.64384 * 12 11 10 14 14 C 1.53189 * 109.58710 * 53.21975 * 12 11 10 15 15 C 1.53040 * 109.31377 * 185.57708 * 14 12 11 16 16 C 1.53040 * 109.53754 * 61.36195 * 15 14 12 17 17 C 1.53195 * 109.31404 * 298.63827 * 16 15 14 18 18 N 1.46921 * 108.77753 * 54.63304 * 17 16 15 19 19 C 1.34771 * 120.63299 * 126.36701 * 18 17 16 20 20 O 1.21616 * 120.00372 * 188.37901 * 19 18 17 21 21 C 1.47238 * 120.00037 * 8.38187 * 19 18 17 22 22 C 1.37005 * 127.19267 * 206.14581 * 21 19 18 23 23 N 1.33315 * 106.37128 * 179.90117 * 22 21 19 24 24 N 1.28509 * 109.44220 * 0.36806 * 23 22 21 25 25 N 1.28710 * 110.63548 * 359.76579 * 24 23 22 26 26 H 0.97012 * 126.03126 * 180.02562 * 25 24 23 27 27 C 1.53782 * 113.61474 * 40.61178 * 11 10 9 28 28 C 1.53956 * 87.01647 * 220.04720 * 27 11 10 29 29 C 1.53780 * 113.61513 * 303.00027 * 11 10 9 30 30 H 0.97002 * 119.99776 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00117 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47200 * 300.00293 * 10 9 7 33 33 H 1.09003 * 109.46971 * 59.99754 * 10 9 7 34 34 H 1.08999 * 109.49758 * 305.52778 * 14 12 11 35 35 H 1.08999 * 109.50094 * 65.62320 * 14 12 11 36 36 H 1.09000 * 109.45951 * 301.34782 * 15 14 12 37 37 H 1.08995 * 109.46606 * 181.38237 * 15 14 12 38 38 H 1.09006 * 109.49987 * 178.68530 * 16 15 14 39 39 H 1.08999 * 109.49980 * 58.58960 * 16 15 14 40 40 H 1.09002 * 109.58313 * 294.84804 * 17 16 15 41 41 H 1.09003 * 109.58701 * 174.42274 * 17 16 15 42 42 H 1.07999 * 126.81182 * 0.02562 * 22 21 19 43 43 H 1.09005 * 113.61166 * 334.55925 * 27 11 10 44 44 H 1.08992 * 113.61666 * 105.46677 * 27 11 10 45 45 H 1.09000 * 113.53628 * 270.81102 * 28 27 11 46 46 H 1.08997 * 113.66928 * 139.92919 * 28 27 11 47 47 H 1.09004 * 113.61096 * 254.53108 * 29 11 10 48 48 H 1.08997 * 113.61451 * 25.43131 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 1.7384 -6.1782 -0.1998 13 1 1.0025 -6.9731 -0.0783 14 6 2.8604 -6.3515 0.8287 15 6 3.6203 -7.6472 0.5352 16 6 4.2496 -7.5672 -0.8575 17 6 3.1433 -7.4076 -1.9051 18 7 2.3181 -6.2456 -1.5482 19 6 2.0976 -5.2599 -2.4404 20 8 1.5441 -4.2352 -2.0902 21 6 2.5269 -5.4235 -3.8393 22 6 2.8451 -4.4318 -4.7294 23 7 3.1772 -5.0410 -5.8678 24 7 3.0716 -6.3130 -5.7188 25 7 2.6860 -6.5994 -4.5247 26 1 2.5350 -7.4905 -4.1721 27 6 -0.1499 -4.5930 -0.9156 28 6 -1.0044 -5.2383 0.1905 29 6 0.0806 -4.7889 1.1833 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6847 -3.7145 -0.8894 33 1 2.6847 -3.7145 0.8905 34 1 3.5453 -5.5059 0.7659 35 1 2.4321 -6.3997 1.8298 36 1 2.9298 -8.4897 0.5738 37 1 4.4037 -7.7855 1.2803 38 1 4.8101 -8.4807 -1.0565 39 1 4.9215 -6.7102 -0.9045 40 1 2.5238 -8.3043 -1.9217 41 1 3.5897 -7.2510 -2.8871 42 1 2.8317 -3.3678 -4.5447 43 1 -0.3782 -3.5407 -1.0856 44 1 -0.1156 -5.1740 -1.8371 45 1 -1.0904 -6.3210 0.0983 46 1 -1.9658 -4.7479 0.3430 47 1 0.3008 -5.5280 1.9536 48 1 -0.0844 -3.7905 1.5880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105546221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:29 Heat of formation + Delta-G solvation = 139.334664 kcal Electronic energy + Delta-G solvation = -31428.138404 eV Core-core repulsion = 27523.163999 eV Total energy + Delta-G solvation = -3904.974405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.49671 -42.50638 -39.17608 -38.48944 -35.83712 -35.01582 -33.72668 -32.92642 -32.51698 -31.87225 -28.57148 -26.97336 -26.64969 -25.35328 -24.58959 -24.49432 -23.70233 -23.00314 -22.20827 -21.05361 -19.59384 -19.17318 -18.48659 -17.84843 -17.44420 -17.31793 -16.67794 -16.50209 -16.17959 -15.68745 -15.44782 -15.35912 -15.17823 -15.10101 -14.73467 -14.46888 -14.25009 -14.05535 -13.33165 -13.25336 -13.23720 -13.06641 -12.84297 -12.80380 -12.46228 -12.35904 -12.11180 -12.06301 -11.97690 -11.87879 -11.73498 -11.62242 -11.45019 -11.12172 -11.01619 -10.77827 -10.69434 -10.44594 -10.24456 -9.46763 -8.72121 -7.87680 -5.10462 -0.10884 1.16669 1.38104 1.44153 1.47906 1.53715 1.72789 2.10454 2.59694 3.16348 3.44152 3.45665 3.65919 3.68462 3.82312 3.93873 3.94509 4.01860 4.06436 4.11437 4.16905 4.19003 4.34187 4.35656 4.46324 4.56368 4.62906 4.85537 4.87144 4.90826 4.91907 5.04074 5.04865 5.09745 5.11871 5.18383 5.26435 5.27296 5.30643 5.41845 5.48959 5.53117 5.59660 5.66029 5.72966 5.85939 6.27839 6.36176 7.08291 7.17198 7.41664 8.28070 8.49593 9.36622 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.004973 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.781943 B = 5628.907670 C = 6966.386687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.967 3.033 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.230 4.230 8 H 0.063 0.937 9 N -0.727 5.727 10 C 0.188 3.812 11 C -0.066 4.066 12 C 0.186 3.814 13 H 0.107 0.893 14 C -0.135 4.135 15 C -0.111 4.111 16 C -0.132 4.132 17 C 0.088 3.912 18 N -0.597 5.597 19 C 0.548 3.452 20 O -0.471 6.471 21 C -0.042 4.042 22 C 0.007 3.993 23 N -0.292 5.292 24 N -0.061 5.061 25 N -0.352 5.352 26 H 0.468 0.532 27 C -0.080 4.080 28 C -0.148 4.148 29 C -0.129 4.129 30 H 0.248 0.752 31 H 0.374 0.626 32 H 0.029 0.971 33 H -0.014 1.014 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.047 0.953 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.195 0.805 43 H 0.046 0.954 44 H 0.056 0.944 45 H 0.104 0.896 46 H 0.051 0.949 47 H 0.086 0.914 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 -26.111 -1.687 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.797 3.203 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.081 0.919 9 N -0.370 5.370 10 C 0.062 3.938 11 C -0.067 4.067 12 C 0.084 3.916 13 H 0.124 0.876 14 C -0.173 4.173 15 C -0.149 4.149 16 C -0.170 4.170 17 C -0.034 4.034 18 N -0.332 5.332 19 C 0.333 3.667 20 O -0.343 6.343 21 C -0.177 4.177 22 C -0.152 4.152 23 N -0.158 5.158 24 N -0.043 5.043 25 N -0.085 5.085 26 H 0.321 0.679 27 C -0.118 4.118 28 C -0.185 4.185 29 C -0.167 4.167 30 H 0.056 0.944 31 H 0.208 0.792 32 H 0.046 0.954 33 H 0.003 0.997 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.066 0.934 40 H 0.133 0.867 41 H 0.096 0.904 42 H 0.212 0.788 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.122 0.878 46 H 0.070 0.930 47 H 0.104 0.896 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.140 -25.900 -2.903 26.776 hybrid contribution -0.308 1.871 1.112 2.198 sum 5.832 -24.028 -1.791 24.791 Atomic orbital electron populations 1.69817 1.06439 1.25602 1.60469 1.25420 0.96300 1.00599 1.04713 0.85294 0.77234 0.79837 0.77951 1.20922 1.22099 1.20553 1.19513 0.90937 0.85957 1.39827 0.91926 1.42532 1.05494 1.00704 1.88313 1.20796 0.93244 0.85025 0.94706 1.22058 0.94287 0.93869 0.96494 1.21045 0.94708 0.95433 0.80405 0.87551 1.22021 0.97321 0.99058 0.98901 1.21498 1.00062 0.96632 0.96659 1.21901 0.97067 1.03218 0.94784 1.22349 0.93407 0.88491 0.99138 1.47865 1.51243 1.21428 1.12713 1.17052 0.82153 0.84686 0.82788 1.91333 1.38732 1.27912 1.76277 1.22367 1.11847 0.86902 0.96612 1.23973 1.00827 1.01829 0.88539 1.74948 1.18790 0.98592 1.23461 1.78074 1.15072 1.10742 1.00459 1.45984 1.43620 1.10366 1.08527 0.67858 1.22711 0.94198 0.99346 0.95512 1.23145 0.97054 1.01215 0.97119 1.22879 0.96597 1.00770 0.96484 0.94361 0.79178 0.95375 0.99679 0.93558 0.89883 0.89311 0.90806 0.87619 0.93450 0.86712 0.90402 0.78812 0.93583 0.92594 0.87776 0.92995 0.89578 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.78 13.06 21.65 0.28 -62.50 16 2 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 3 Si 0.97 49.07 29.55 68.60 2.03 51.10 16 4 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 5 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 6 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.23 -13.77 9.99 84.04 0.84 -12.93 16 8 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 9 N -0.73 -39.53 4.68 -343.45 -1.61 -41.14 16 10 C 0.19 8.09 3.98 86.38 0.34 8.44 16 11 C -0.07 -2.12 0.27 -51.65 -0.01 -2.13 16 12 C 0.19 3.90 2.30 44.98 0.10 4.00 16 13 H 0.11 1.66 7.33 -2.39 -0.02 1.65 16 14 C -0.13 -2.51 5.03 30.67 0.15 -2.36 16 15 C -0.11 -1.17 5.88 30.62 0.18 -0.99 16 16 C -0.13 -1.29 6.08 30.67 0.19 -1.10 16 17 C 0.09 0.85 5.36 86.36 0.46 1.31 16 18 N -0.60 -11.52 2.96 -799.09 -2.37 -13.88 16 19 C 0.55 14.95 5.76 86.61 0.50 15.45 16 20 O -0.47 -17.78 7.95 -4.08 -0.03 -17.81 16 21 C -0.04 -1.03 6.35 40.41 0.26 -0.77 16 22 C 0.01 0.21 11.96 84.18 1.01 1.22 16 23 N -0.29 -8.43 12.35 -57.50 -0.71 -9.14 16 24 N -0.06 -1.44 13.35 37.02 0.49 -0.95 16 25 N -0.35 -6.08 5.72 -48.52 -0.28 -6.36 16 26 H 0.47 3.80 6.87 -219.89 -1.51 2.29 16 27 C -0.08 -2.82 4.51 31.18 0.14 -2.68 16 28 C -0.15 -4.19 7.74 31.18 0.24 -3.95 16 29 C -0.13 -4.06 6.92 31.12 0.22 -3.85 16 30 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.37 21.66 4.98 -92.71 -0.46 21.20 16 32 H 0.03 1.30 5.20 -19.88 -0.10 1.20 16 33 H -0.01 -0.63 7.04 -2.39 -0.02 -0.65 16 34 H 0.05 1.17 6.51 -2.39 -0.02 1.15 16 35 H 0.08 1.46 7.79 -2.39 -0.02 1.44 16 36 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.08 0.71 4.56 -2.39 -0.01 0.70 16 42 H 0.19 5.81 8.06 -2.91 -0.02 5.79 16 43 H 0.05 2.16 5.95 -2.38 -0.01 2.15 16 44 H 0.06 1.85 6.15 -2.39 -0.01 1.83 16 45 H 0.10 2.15 7.62 -2.39 -0.02 2.13 16 46 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.09 2.11 7.75 -2.38 -0.02 2.09 16 48 H 0.05 2.05 7.23 -2.39 -0.02 2.03 16 Total: -1.00 -79.90 356.57 1.84 -78.06 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -1.05 Total: 27.29 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.08 Total: -4.67 kcal Atomic # 7 Polarization: -129.78 SS G_CDS: -4.18 Total: -133.97 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.03 Total: -17.81 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.03 Total: 51.10 kcal Total: -79.90 1.84 -78.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105546221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.395 kcal (2) G-P(sol) polarization free energy of solvation -79.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds