Wall clock time and date at job start Tue Mar 31 2020 18:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 120.00188 * 2 1 4 4 H 1.48497 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46783 * 299.99811 * 3 2 1 6 6 H 1.48496 * 109.46765 * 59.99537 * 3 2 1 7 7 C 1.38810 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.47587 * 134.49160 * 180.02562 * 9 7 2 11 11 C 1.53943 * 86.11372 * 155.35584 * 10 9 7 12 12 N 1.46497 * 113.73765 * 137.95286 * 11 10 9 13 13 C 1.35317 * 125.87017 * 276.92228 * 12 11 10 14 14 C 1.35348 * 106.17735 * 180.21003 * 13 12 11 15 15 C 1.50695 * 126.75026 * 179.78015 * 14 13 12 16 16 N 1.46501 * 109.47705 * 94.99599 * 15 14 13 17 17 C 1.34773 * 120.00017 * 179.97438 * 16 15 14 18 18 O 1.21271 * 120.00319 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99465 * 179.97438 * 17 16 15 20 20 C 1.53007 * 109.46908 * 180.02562 * 19 17 16 21 21 C 1.54268 * 110.02922 * 292.90721 * 20 19 17 22 22 C 1.54961 * 104.15951 * 217.13638 * 21 20 19 23 23 C 1.54893 * 102.77630 * 37.88701 * 22 21 20 24 24 C 1.53872 * 110.03015 * 175.69172 * 20 19 17 25 25 N 1.33774 * 106.49647 * 359.63857 * 14 13 12 26 26 N 1.28636 * 108.88665 * 0.37294 * 25 14 13 27 27 C 1.47811 * 134.45712 * 359.86196 * 9 7 2 28 28 H 0.97005 * 119.99940 * 0.02562 * 1 2 3 29 29 H 1.09000 * 113.76860 * 41.05573 * 10 9 7 30 30 H 1.09000 * 113.86642 * 269.67306 * 10 9 7 31 31 H 1.09004 * 113.74249 * 269.15104 * 11 10 9 32 32 H 1.08002 * 126.90702 * 359.93974 * 13 12 11 33 33 H 1.09004 * 109.46902 * 214.99581 * 15 14 13 34 34 H 1.09001 * 109.47591 * 334.99010 * 15 14 13 35 35 H 0.96996 * 119.99307 * 359.97438 * 16 15 14 36 36 H 1.08998 * 109.46874 * 300.00049 * 19 17 16 37 37 H 1.08996 * 109.47008 * 60.00347 * 19 17 16 38 38 H 1.08995 * 110.01396 * 54.29819 * 20 19 17 39 39 H 1.08999 * 110.49111 * 335.78416 * 21 20 19 40 40 H 1.09005 * 110.48394 * 98.42807 * 21 20 19 41 41 H 1.09002 * 110.71893 * 279.57433 * 22 21 20 42 42 H 1.08996 * 110.92531 * 156.29539 * 22 21 20 43 43 H 1.08997 * 110.48547 * 203.40398 * 23 22 21 44 44 H 1.09005 * 110.59618 * 80.82165 * 23 22 21 45 45 H 1.09003 * 110.02818 * 238.56838 * 24 20 19 46 46 H 1.08999 * 110.03360 * 359.97438 * 24 20 19 47 47 H 1.09001 * 113.76395 * 90.38187 * 27 9 7 48 48 H 1.08996 * 113.83516 * 318.92330 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7201 -3.8102 0.0015 11 6 0.3466 -4.0826 0.6410 12 7 -0.3333 -5.2612 0.0981 13 6 -1.0749 -5.2979 -1.0332 14 6 -1.5148 -6.5721 -1.1545 15 6 -2.3868 -7.1242 -2.2526 16 7 -1.5447 -7.7293 -3.2875 17 6 -2.1110 -8.2911 -4.3738 18 8 -3.3176 -8.2955 -4.4948 19 6 -1.2445 -8.9129 -5.4386 20 6 -2.1300 -9.4736 -6.5534 21 6 -2.9542 -10.6655 -6.0245 22 6 -2.9964 -11.6556 -7.2158 23 6 -1.5791 -11.5186 -7.8254 24 6 -1.2562 -10.0155 -7.6982 25 7 -1.0207 -7.2457 -0.1097 26 7 -0.3277 -6.4401 0.6151 27 6 -0.1058 -2.7571 0.0026 28 1 -0.4850 0.8401 -0.0004 29 1 2.5619 -4.0321 0.6574 30 1 1.8333 -4.2371 -0.9950 31 1 0.3582 -4.0631 1.7308 32 1 -1.2787 -4.4748 -1.7021 33 1 -3.0552 -7.8802 -1.8403 34 1 -2.9759 -6.3177 -2.6891 35 1 -0.5796 -7.7254 -3.1908 36 1 -0.5768 -8.1566 -5.8511 37 1 -0.6550 -9.7192 -5.0022 38 1 -2.7957 -8.6960 -6.9277 39 1 -2.4590 -11.1214 -5.1672 40 1 -3.9614 -10.3446 -5.7583 41 1 -3.7576 -11.3586 -7.9373 42 1 -3.1711 -12.6742 -6.8694 43 1 -1.5835 -11.8205 -8.8727 44 1 -0.8599 -12.1124 -7.2612 45 1 -1.4986 -9.5015 -8.6283 46 1 -0.2014 -9.8787 -7.4598 47 1 -0.5311 -2.8722 -0.9944 48 1 -0.7188 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107120338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:24 Heat of formation + Delta-G solvation = 99.470449 kcal Electronic energy + Delta-G solvation = -27655.008862 eV Core-core repulsion = 23748.305814 eV Total energy + Delta-G solvation = -3906.703048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.09786 -40.05978 -38.41730 -38.02653 -35.20912 -33.43775 -32.17559 -31.85843 -31.04075 -28.89464 -28.01900 -27.35328 -25.49408 -25.11730 -24.39458 -21.96823 -21.19343 -20.98593 -20.68638 -19.73913 -19.63610 -17.73561 -17.22571 -16.69275 -16.42080 -15.94791 -15.68357 -15.46055 -15.15354 -14.99621 -14.70590 -14.12730 -13.86446 -13.75364 -13.57230 -13.31961 -12.99516 -12.93724 -12.37438 -12.14842 -12.10804 -11.87487 -11.48223 -11.41529 -11.32956 -11.21088 -11.20058 -11.01728 -11.00675 -10.96740 -10.85024 -10.65656 -10.55169 -10.23615 -10.00395 -9.91479 -9.58553 -9.16553 -9.13167 -9.06841 -7.29271 -6.08008 -3.43479 1.78929 2.41833 2.57350 2.61275 3.23693 3.29595 3.32007 3.35368 4.19028 4.30227 4.34187 4.35614 4.46986 4.68442 4.70872 4.76660 4.91100 4.94772 5.03284 5.12672 5.17411 5.21226 5.29550 5.37515 5.39254 5.42327 5.50112 5.53223 5.57617 5.59844 5.67127 5.73735 5.78892 5.86512 6.01871 6.05708 6.07544 6.09817 6.13367 6.25147 6.26758 6.29696 6.50455 6.76425 6.99758 7.13258 7.39932 7.64498 8.13161 8.70710 8.72432 9.38588 10.15794 11.09286 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.001951 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.963710 B =14348.245386 C =15183.590218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.001 4.001 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.232 4.232 8 H 0.088 0.912 9 N -0.599 5.599 10 C 0.120 3.880 11 C 0.077 3.923 12 N -0.265 5.265 13 C -0.015 4.015 14 C -0.063 4.063 15 C 0.215 3.785 16 N -0.726 5.726 17 C 0.513 3.487 18 O -0.539 6.539 19 C -0.135 4.135 20 C -0.076 4.076 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.123 4.123 25 N -0.268 5.268 26 N -0.089 5.089 27 C 0.163 3.837 28 H 0.259 0.741 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.132 0.868 32 H 0.191 0.809 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.402 0.598 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.041 0.959 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 -18.147 -11.745 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.199 4.199 3 Si 0.749 3.251 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.359 4.359 8 H 0.106 0.894 9 N -0.325 5.325 10 C -0.007 4.007 11 C -0.025 4.025 12 N -0.057 5.057 13 C -0.169 4.169 14 C -0.202 4.202 15 C 0.090 3.910 16 N -0.378 5.378 17 C 0.300 3.700 18 O -0.416 6.416 19 C -0.175 4.175 20 C -0.095 4.095 21 C -0.151 4.151 22 C -0.165 4.165 23 C -0.163 4.163 24 C -0.160 4.160 25 N -0.134 5.134 26 N -0.068 5.068 27 C 0.037 3.963 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.150 0.850 32 H 0.208 0.792 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.236 0.764 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.059 0.941 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.172 -18.620 -10.608 21.663 hybrid contribution 0.690 1.838 -0.729 2.095 sum -2.481 -16.781 -11.338 20.404 Atomic orbital electron populations 1.69769 1.05177 1.26075 1.55437 1.24858 0.95794 0.97954 1.01276 0.85943 0.78789 0.82882 0.77499 1.20199 1.21422 1.21357 1.19051 0.90459 0.80951 1.45445 0.89424 1.45678 1.01599 0.99357 1.85886 1.22928 0.93420 0.86628 0.97739 1.25284 0.95466 0.80593 1.01149 1.47916 1.31910 1.09854 1.16057 1.23508 0.99442 1.00479 0.93472 1.21743 1.06891 0.91815 0.99707 1.19262 0.90215 0.97847 0.83673 1.46112 1.10787 1.59611 1.21317 1.20702 0.89131 0.77840 0.82358 1.90692 1.14835 1.58051 1.78036 1.21871 0.98755 1.01542 0.95364 1.21535 0.96129 0.98216 0.93643 1.22406 1.01003 0.94578 0.97122 1.22541 0.96847 0.99302 0.97850 1.22357 0.97129 0.96226 1.00564 1.22241 0.99658 0.95854 0.98280 1.75020 1.09348 1.25450 1.03612 1.78275 1.18650 0.88669 1.21212 1.22743 0.89416 0.86229 0.97942 0.93123 0.91966 0.93980 0.85032 0.79242 0.89871 0.89729 0.76380 0.88885 0.88856 0.90172 0.92068 0.90728 0.91649 0.91833 0.91953 0.91754 0.91706 0.91637 0.94095 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.92 11.39 55.49 0.63 -24.29 16 2 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 3 Si 0.92 20.55 29.55 -169.99 -5.02 15.52 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.23 -5.92 10.70 -15.06 -0.16 -6.08 16 8 H 0.09 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.60 -13.64 3.70 -177.90 -0.66 -14.30 16 10 C 0.12 2.18 8.74 -2.96 -0.03 2.16 16 11 C 0.08 1.31 5.14 -70.16 -0.36 0.95 16 12 N -0.26 -4.26 3.54 -56.32 -0.20 -4.46 16 13 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 14 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 15 C 0.22 2.54 6.23 -5.20 -0.03 2.51 16 16 N -0.73 -7.56 5.55 -61.47 -0.34 -7.90 16 17 C 0.51 5.59 7.61 -10.98 -0.08 5.50 16 18 O -0.54 -7.64 14.78 5.56 0.08 -7.56 16 19 C -0.14 -1.05 4.83 -27.88 -0.13 -1.19 16 20 C -0.08 -0.63 2.55 -89.50 -0.23 -0.86 16 21 C -0.11 -1.01 5.40 -25.03 -0.14 -1.14 16 22 C -0.13 -0.93 6.91 -24.70 -0.17 -1.10 16 23 C -0.13 -0.81 6.83 -25.07 -0.17 -0.99 16 24 C -0.12 -0.82 6.46 -25.62 -0.17 -0.99 16 25 N -0.27 -4.40 12.41 33.29 0.41 -3.99 16 26 N -0.09 -1.53 13.17 60.35 0.79 -0.74 16 27 C 0.16 3.31 6.90 -2.85 -0.02 3.29 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 32 H 0.19 2.40 6.73 -52.49 -0.35 2.04 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.40 3.67 8.46 -40.82 -0.35 3.32 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.61 8.02 -51.93 -0.42 0.19 16 38 H 0.08 0.78 7.95 -51.93 -0.41 0.36 16 39 H 0.06 0.55 7.77 -51.93 -0.40 0.15 16 40 H 0.07 0.79 7.63 -51.93 -0.40 0.40 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 47 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 48 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -30.08 389.95 -8.56 -38.64 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.62 Total: 3.09 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -2.51 Total: 0.10 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.64 Total: -55.67 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.08 Total: -7.56 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.08 -8.56 -38.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107120338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.109 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds