Wall clock time and date at job start Tue Mar 31 2020 18:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 120.00188 * 2 1 4 4 H 1.48497 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46783 * 299.99811 * 3 2 1 6 6 H 1.48496 * 109.46765 * 59.99537 * 3 2 1 7 7 C 1.38810 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.47587 * 134.49160 * 180.02562 * 9 7 2 11 11 C 1.53943 * 86.11372 * 155.35584 * 10 9 7 12 12 N 1.46497 * 113.73765 * 137.95286 * 11 10 9 13 13 C 1.35317 * 125.87017 * 276.92228 * 12 11 10 14 14 C 1.35348 * 106.17735 * 180.21003 * 13 12 11 15 15 C 1.50695 * 126.75026 * 179.78015 * 14 13 12 16 16 N 1.46501 * 109.47705 * 94.99599 * 15 14 13 17 17 C 1.34773 * 120.00017 * 179.97438 * 16 15 14 18 18 O 1.21271 * 120.00319 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99465 * 179.97438 * 17 16 15 20 20 C 1.53007 * 109.46908 * 180.02562 * 19 17 16 21 21 C 1.54268 * 110.02922 * 292.90721 * 20 19 17 22 22 C 1.54961 * 104.15951 * 217.13638 * 21 20 19 23 23 C 1.54893 * 102.77630 * 37.88701 * 22 21 20 24 24 C 1.53872 * 110.03015 * 175.69172 * 20 19 17 25 25 N 1.33774 * 106.49647 * 359.63857 * 14 13 12 26 26 N 1.28636 * 108.88665 * 0.37294 * 25 14 13 27 27 C 1.47811 * 134.45712 * 359.86196 * 9 7 2 28 28 H 0.97005 * 119.99940 * 0.02562 * 1 2 3 29 29 H 1.09000 * 113.76860 * 41.05573 * 10 9 7 30 30 H 1.09000 * 113.86642 * 269.67306 * 10 9 7 31 31 H 1.09004 * 113.74249 * 269.15104 * 11 10 9 32 32 H 1.08002 * 126.90702 * 359.93974 * 13 12 11 33 33 H 1.09004 * 109.46902 * 214.99581 * 15 14 13 34 34 H 1.09001 * 109.47591 * 334.99010 * 15 14 13 35 35 H 0.96996 * 119.99307 * 359.97438 * 16 15 14 36 36 H 1.08998 * 109.46874 * 300.00049 * 19 17 16 37 37 H 1.08996 * 109.47008 * 60.00347 * 19 17 16 38 38 H 1.08995 * 110.01396 * 54.29819 * 20 19 17 39 39 H 1.08999 * 110.49111 * 335.78416 * 21 20 19 40 40 H 1.09005 * 110.48394 * 98.42807 * 21 20 19 41 41 H 1.09002 * 110.71893 * 279.57433 * 22 21 20 42 42 H 1.08996 * 110.92531 * 156.29539 * 22 21 20 43 43 H 1.08997 * 110.48547 * 203.40398 * 23 22 21 44 44 H 1.09005 * 110.59618 * 80.82165 * 23 22 21 45 45 H 1.09003 * 110.02818 * 238.56838 * 24 20 19 46 46 H 1.08999 * 110.03360 * 359.97438 * 24 20 19 47 47 H 1.09001 * 113.76395 * 90.38187 * 27 9 7 48 48 H 1.08996 * 113.83516 * 318.92330 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7201 -3.8102 0.0015 11 6 0.3466 -4.0826 0.6410 12 7 -0.3333 -5.2612 0.0981 13 6 -1.0749 -5.2979 -1.0332 14 6 -1.5148 -6.5721 -1.1545 15 6 -2.3868 -7.1242 -2.2526 16 7 -1.5447 -7.7293 -3.2875 17 6 -2.1110 -8.2911 -4.3738 18 8 -3.3176 -8.2955 -4.4948 19 6 -1.2445 -8.9129 -5.4386 20 6 -2.1300 -9.4736 -6.5534 21 6 -2.9542 -10.6655 -6.0245 22 6 -2.9964 -11.6556 -7.2158 23 6 -1.5791 -11.5186 -7.8254 24 6 -1.2562 -10.0155 -7.6982 25 7 -1.0207 -7.2457 -0.1097 26 7 -0.3277 -6.4401 0.6151 27 6 -0.1058 -2.7571 0.0026 28 1 -0.4850 0.8401 -0.0004 29 1 2.5619 -4.0321 0.6574 30 1 1.8333 -4.2371 -0.9950 31 1 0.3582 -4.0631 1.7308 32 1 -1.2787 -4.4748 -1.7021 33 1 -3.0552 -7.8802 -1.8403 34 1 -2.9759 -6.3177 -2.6891 35 1 -0.5796 -7.7254 -3.1908 36 1 -0.5768 -8.1566 -5.8511 37 1 -0.6550 -9.7192 -5.0022 38 1 -2.7957 -8.6960 -6.9277 39 1 -2.4590 -11.1214 -5.1672 40 1 -3.9614 -10.3446 -5.7583 41 1 -3.7576 -11.3586 -7.9373 42 1 -3.1711 -12.6742 -6.8694 43 1 -1.5835 -11.8205 -8.8727 44 1 -0.8599 -12.1124 -7.2612 45 1 -1.4986 -9.5015 -8.6283 46 1 -0.2014 -9.8787 -7.4598 47 1 -0.5311 -2.8722 -0.9944 48 1 -0.7188 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107120338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:23 Heat of formation + Delta-G solvation = 81.078942 kcal Electronic energy + Delta-G solvation = -27655.806377 eV Core-core repulsion = 23748.305814 eV Total energy + Delta-G solvation = -3907.500563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.35621 -40.90340 -39.94796 -38.71300 -36.23484 -34.95338 -33.67590 -32.85850 -32.00343 -29.71720 -29.48215 -28.32257 -26.89315 -26.16922 -25.85164 -23.42657 -22.38485 -21.71684 -21.40615 -21.13693 -20.36438 -19.06183 -18.57923 -17.90742 -17.52481 -16.98306 -16.86592 -16.58695 -16.30489 -15.93480 -15.73888 -15.63175 -14.89713 -14.69137 -14.61374 -14.32054 -14.14390 -13.93609 -13.66821 -13.58413 -13.40208 -12.98934 -12.86847 -12.80454 -12.63276 -12.43433 -12.08676 -12.06366 -11.89410 -11.80373 -11.78643 -11.73103 -11.61636 -11.47689 -11.25039 -11.07425 -10.94527 -10.84013 -10.25745 -10.08159 -9.11197 -8.01494 -5.36697 0.56341 1.24808 1.28990 1.47779 1.49530 1.58189 1.72305 2.41815 2.45428 3.07251 3.12042 3.31098 3.33738 3.67530 3.73742 3.76636 3.85665 3.91536 3.98911 4.08555 4.15523 4.38152 4.46395 4.49593 4.56936 4.59467 4.63113 4.68332 4.70927 4.79013 4.88541 4.91983 4.94636 5.00423 5.01874 5.05152 5.09949 5.14642 5.18271 5.30018 5.36572 5.37863 5.45074 5.53518 5.60004 5.65782 5.76986 6.57193 6.80166 7.28927 7.45376 7.48525 8.33307 9.15493 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.001951 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.963710 B =14348.245386 C =15183.590218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.057 4.057 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.092 0.908 9 N -0.628 5.628 10 C 0.126 3.874 11 C 0.104 3.896 12 N -0.268 5.268 13 C -0.014 4.014 14 C -0.048 4.048 15 C 0.219 3.781 16 N -0.719 5.719 17 C 0.511 3.489 18 O -0.576 6.576 19 C -0.129 4.129 20 C -0.077 4.077 21 C -0.115 4.115 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.119 4.119 25 N -0.282 5.282 26 N -0.108 5.108 27 C 0.165 3.835 28 H 0.253 0.747 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.138 0.862 32 H 0.207 0.793 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.411 0.589 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.047 0.953 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 -19.148 -12.793 23.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.251 4.251 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.364 4.364 8 H 0.109 0.891 9 N -0.355 5.355 10 C 0.000 4.000 11 C 0.002 3.998 12 N -0.061 5.061 13 C -0.167 4.167 14 C -0.188 4.188 15 C 0.094 3.906 16 N -0.372 5.372 17 C 0.299 3.701 18 O -0.456 6.456 19 C -0.169 4.169 20 C -0.096 4.096 21 C -0.152 4.152 22 C -0.165 4.165 23 C -0.161 4.161 24 C -0.156 4.156 25 N -0.148 5.148 26 N -0.087 5.087 27 C 0.039 3.961 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.224 0.776 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.246 0.754 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.065 0.935 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.582 -19.667 -11.652 22.914 hybrid contribution 0.149 2.041 -0.422 2.090 sum -1.432 -17.626 -12.074 21.413 Atomic orbital electron populations 1.69920 1.06345 1.26151 1.57232 1.25600 0.96571 1.00841 1.02046 0.85004 0.78334 0.79222 0.76697 1.18844 1.21963 1.21917 1.19380 0.90994 0.82218 1.43844 0.89064 1.45913 1.02882 1.00462 1.86228 1.23018 0.94378 0.84028 0.98597 1.24693 0.94393 0.79670 1.01035 1.47719 1.32395 1.09408 1.16570 1.23829 0.98791 1.01115 0.92991 1.21939 1.06098 0.91440 0.99288 1.19211 0.89963 0.97950 0.83506 1.46044 1.11107 1.59234 1.20832 1.21281 0.88972 0.77175 0.82645 1.90686 1.16632 1.59482 1.78798 1.21913 0.98361 1.02441 0.94137 1.21516 0.96215 0.97423 0.94446 1.22369 0.99678 0.95411 0.97786 1.22543 0.97693 0.99081 0.97191 1.22364 0.96357 0.96192 1.01141 1.22222 1.00021 0.95842 0.97549 1.75008 1.09669 1.25773 1.04354 1.78282 1.19631 0.88923 1.21854 1.22614 0.88244 0.87408 0.97882 0.93804 0.90570 0.92787 0.84452 0.77638 0.90582 0.88950 0.75358 0.86741 0.86980 0.92094 0.92231 0.93316 0.91888 0.91338 0.91045 0.91105 0.91464 0.90201 0.93501 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.10 11.39 21.65 0.25 -51.86 16 2 C -0.06 -2.94 5.50 84.86 0.47 -2.47 16 3 Si 0.98 42.19 29.55 68.60 2.03 44.22 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.24 -11.93 10.70 84.03 0.90 -11.03 16 8 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.63 -28.11 3.70 -716.76 -2.65 -30.77 16 10 C 0.13 4.34 8.74 86.48 0.76 5.10 16 11 C 0.10 3.41 5.14 46.74 0.24 3.65 16 12 N -0.27 -8.21 3.54 -332.08 -1.18 -9.38 16 13 C -0.01 -0.38 10.72 83.49 0.89 0.52 16 14 C -0.05 -1.27 6.61 41.59 0.28 -0.99 16 15 C 0.22 4.90 6.23 85.63 0.53 5.43 16 16 N -0.72 -13.79 5.55 -466.80 -2.59 -16.38 16 17 C 0.51 10.54 7.61 87.66 0.67 11.20 16 18 O -0.58 -16.34 14.78 -3.00 -0.04 -16.39 16 19 C -0.13 -1.73 4.83 29.85 0.14 -1.59 16 20 C -0.08 -1.19 2.55 -10.07 -0.03 -1.22 16 21 C -0.11 -2.01 5.40 31.69 0.17 -1.84 16 22 C -0.13 -1.75 6.91 31.91 0.22 -1.53 16 23 C -0.12 -1.34 6.83 31.67 0.22 -1.12 16 24 C -0.12 -1.33 6.46 31.32 0.20 -1.13 16 25 N -0.28 -8.86 12.41 -48.60 -0.60 -9.46 16 26 N -0.11 -3.57 13.17 37.02 0.49 -3.09 16 27 C 0.17 6.62 6.90 86.43 0.60 7.22 16 28 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16 29 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.14 4.37 8.14 -2.38 -0.02 4.35 16 32 H 0.21 4.79 6.73 -2.91 -0.02 4.77 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.41 6.54 8.46 -92.71 -0.78 5.76 16 36 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 1.13 8.02 -2.39 -0.02 1.12 16 38 H 0.06 1.18 7.95 -2.39 -0.02 1.16 16 39 H 0.06 1.03 7.77 -2.39 -0.02 1.02 16 40 H 0.05 1.09 7.63 -2.38 -0.02 1.07 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.08 0.68 7.67 -2.39 -0.02 0.67 16 47 H 0.05 1.82 6.31 -2.39 -0.02 1.80 16 48 H 0.06 2.92 7.16 -2.39 -0.02 2.91 16 Total: -1.00 -64.49 389.95 2.13 -62.36 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.18 Total: 20.54 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 6.26 Total: 10.20 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -6.29 Total: -120.93 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.04 Total: -16.39 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -64.49 2.13 -62.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107120338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.438 kcal (2) G-P(sol) polarization free energy of solvation -64.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds