Wall clock time and date at job start Tue Mar 31 2020 18:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 120.00188 * 2 1 4 4 H 1.48502 * 109.47037 * 239.99789 * 3 2 1 5 5 H 1.48505 * 109.46825 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46970 * 119.99399 * 3 2 1 7 7 C 1.38810 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.47587 * 134.49160 * 180.02562 * 9 7 2 11 11 C 1.53943 * 86.11372 * 155.35584 * 10 9 7 12 12 N 1.46497 * 113.73765 * 137.95286 * 11 10 9 13 13 C 1.35317 * 125.87017 * 276.92228 * 12 11 10 14 14 C 1.35348 * 106.17735 * 180.21003 * 13 12 11 15 15 C 1.50695 * 126.75026 * 179.78015 * 14 13 12 16 16 N 1.46501 * 109.47705 * 94.99599 * 15 14 13 17 17 C 1.34773 * 120.00017 * 179.97438 * 16 15 14 18 18 O 1.21271 * 120.00319 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99465 * 179.97438 * 17 16 15 20 20 C 1.53007 * 109.46908 * 180.02562 * 19 17 16 21 21 C 1.52993 * 109.47057 * 180.02562 * 20 19 17 22 22 C 1.53789 * 113.61329 * 274.13349 * 21 20 19 23 23 C 1.53953 * 87.01866 * 220.04885 * 22 21 20 24 24 C 1.53776 * 87.11107 * 25.36408 * 23 22 21 25 25 N 1.33774 * 106.49647 * 359.63857 * 14 13 12 26 26 N 1.28636 * 108.88665 * 0.37294 * 25 14 13 27 27 C 1.47811 * 134.45712 * 359.86196 * 9 7 2 28 28 H 0.97005 * 119.99940 * 0.02562 * 1 2 3 29 29 H 1.09000 * 113.76860 * 41.05573 * 10 9 7 30 30 H 1.09000 * 113.86642 * 269.67306 * 10 9 7 31 31 H 1.09004 * 113.74249 * 269.15104 * 11 10 9 32 32 H 1.08002 * 126.90702 * 359.93974 * 13 12 11 33 33 H 1.09004 * 109.46902 * 214.99581 * 15 14 13 34 34 H 1.09001 * 109.47591 * 334.99010 * 15 14 13 35 35 H 0.96996 * 119.99307 * 359.97438 * 16 15 14 36 36 H 1.08998 * 109.46874 * 300.00049 * 19 17 16 37 37 H 1.08996 * 109.47008 * 60.00347 * 19 17 16 38 38 H 1.08998 * 109.46628 * 300.00140 * 20 19 17 39 39 H 1.09000 * 109.47159 * 59.99697 * 20 19 17 40 40 H 1.08996 * 112.85432 * 45.32584 * 21 20 19 41 41 H 1.09001 * 113.61107 * 334.57337 * 22 21 20 42 42 H 1.08997 * 113.61391 * 105.47046 * 22 21 20 43 43 H 1.08997 * 113.53612 * 270.81080 * 23 22 21 44 44 H 1.08999 * 113.73850 * 139.94204 * 23 22 21 45 45 H 1.09008 * 113.61141 * 220.09024 * 24 23 22 46 46 H 1.09006 * 113.69417 * 89.19989 * 24 23 22 47 47 H 1.09001 * 113.76395 * 90.38187 * 27 9 7 48 48 H 1.08996 * 113.83516 * 318.92330 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7201 -3.8102 0.0015 11 6 0.3466 -4.0826 0.6410 12 7 -0.3333 -5.2612 0.0981 13 6 -1.0749 -5.2979 -1.0332 14 6 -1.5148 -6.5721 -1.1545 15 6 -2.3868 -7.1242 -2.2526 16 7 -1.5447 -7.7293 -3.2875 17 6 -2.1110 -8.2911 -4.3738 18 8 -3.3176 -8.2955 -4.4948 19 6 -1.2445 -8.9129 -5.4386 20 6 -2.1300 -9.4736 -6.5534 21 6 -1.2504 -10.1054 -7.6341 22 6 -0.7506 -9.1015 -8.6864 23 6 -1.0084 -10.1969 -9.7369 24 6 -2.0492 -10.7759 -8.7642 25 7 -1.0207 -7.2457 -0.1097 26 7 -0.3277 -6.4401 0.6151 27 6 -0.1058 -2.7571 0.0026 28 1 -0.4850 0.8401 -0.0004 29 1 2.5619 -4.0321 0.6574 30 1 1.8333 -4.2371 -0.9950 31 1 0.3582 -4.0631 1.7308 32 1 -1.2787 -4.4748 -1.7021 33 1 -3.0552 -7.8802 -1.8403 34 1 -2.9759 -6.3177 -2.6891 35 1 -0.5796 -7.7254 -3.1908 36 1 -0.5768 -8.1566 -5.8511 37 1 -0.6550 -9.7192 -5.0022 38 1 -2.7980 -10.2297 -6.1411 39 1 -2.7193 -8.6671 -6.9896 40 1 -0.4620 -10.7359 -7.2231 41 1 -1.3945 -8.2291 -8.7980 42 1 0.3019 -8.8405 -8.5756 43 1 -0.1529 -10.8519 -9.9018 44 1 -1.4395 -9.8219 -10.6652 45 1 -2.0435 -11.8649 -8.7162 46 1 -3.0494 -10.3633 -8.8963 47 1 -0.5311 -2.8722 -0.9944 48 1 -0.7188 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107153683.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:26 Heat of formation + Delta-G solvation = 106.633532 kcal Electronic energy + Delta-G solvation = -27311.851176 eV Core-core repulsion = 23405.458743 eV Total energy + Delta-G solvation = -3906.392433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.35509 -40.79917 -39.94526 -39.54814 -36.30841 -34.95265 -33.81274 -33.56918 -32.35077 -29.71445 -28.56002 -26.95662 -26.56874 -26.27831 -25.95017 -23.42993 -23.03821 -22.26479 -21.25617 -21.12501 -20.24604 -19.04542 -18.50539 -17.83324 -17.51751 -16.97103 -16.83396 -16.71123 -16.27453 -15.97618 -15.76195 -15.52954 -15.04757 -14.83502 -14.57405 -14.30513 -14.09048 -13.67557 -13.63625 -13.53553 -13.38711 -13.25750 -12.97969 -12.81785 -12.74306 -12.62601 -12.43863 -12.24175 -12.14723 -11.86241 -11.80402 -11.71783 -11.37928 -11.19615 -11.03464 -10.95079 -10.90343 -10.81701 -10.26138 -10.10522 -9.10799 -8.00718 -5.36034 0.56491 1.24719 1.29087 1.49081 1.50793 1.56517 1.69466 2.42176 2.44815 3.07579 3.12147 3.31418 3.33835 3.71383 3.73012 3.78753 3.82119 3.91656 3.98886 4.02442 4.04865 4.15764 4.30237 4.42564 4.48771 4.56685 4.59081 4.68409 4.72527 4.80847 4.89149 4.92456 4.94371 4.96221 5.00703 5.05242 5.08360 5.10152 5.13208 5.22717 5.32137 5.36615 5.41846 5.48869 5.65978 5.71696 5.77380 6.55319 6.80348 7.26273 7.45498 7.49103 8.33905 9.15810 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013074 B = 0.001970 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.156410 B =14207.916798 C =15608.216008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.056 4.056 3 Si 0.980 3.020 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.239 4.239 8 H 0.091 0.909 9 N -0.627 5.627 10 C 0.126 3.874 11 C 0.104 3.896 12 N -0.268 5.268 13 C -0.014 4.014 14 C -0.049 4.049 15 C 0.218 3.782 16 N -0.718 5.718 17 C 0.511 3.489 18 O -0.585 6.585 19 C -0.132 4.132 20 C -0.089 4.089 21 C -0.108 4.108 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.142 4.142 25 N -0.281 5.281 26 N -0.108 5.108 27 C 0.165 3.835 28 H 0.253 0.747 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.138 0.862 32 H 0.207 0.793 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.412 0.588 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.047 0.953 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 -18.250 -13.829 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.250 4.250 3 Si 0.807 3.193 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.367 4.367 8 H 0.109 0.891 9 N -0.355 5.355 10 C 0.000 4.000 11 C 0.002 3.998 12 N -0.061 5.061 13 C -0.167 4.167 14 C -0.188 4.188 15 C 0.093 3.907 16 N -0.371 5.371 17 C 0.300 3.700 18 O -0.465 6.465 19 C -0.171 4.171 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.178 4.178 23 C -0.181 4.181 24 C -0.180 4.180 25 N -0.148 5.148 26 N -0.087 5.087 27 C 0.039 3.961 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.224 0.776 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.248 0.752 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.065 0.935 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.929 -18.765 -12.686 22.670 hybrid contribution 0.211 1.973 -0.501 2.046 sum -0.718 -16.793 -13.186 21.363 Atomic orbital electron populations 1.69907 1.06329 1.26297 1.57061 1.25601 0.96568 1.00843 1.01986 0.85143 0.77204 0.78572 0.78347 1.20273 1.22159 1.20113 1.19302 0.90983 0.82248 1.44149 0.89109 1.45895 1.02871 1.00437 1.86255 1.23017 0.94376 0.84045 0.98586 1.24696 0.94392 0.79674 1.01037 1.47719 1.32387 1.09407 1.16565 1.23830 0.98772 1.01112 0.92988 1.21929 1.06115 0.91448 0.99287 1.19228 0.89994 0.98002 0.83526 1.46041 1.11169 1.59069 1.20774 1.21356 0.88866 0.77119 0.82691 1.90690 1.16912 1.59912 1.78991 1.21713 0.98673 1.02627 0.94115 1.21257 0.97084 0.99795 0.94611 1.22589 0.98435 0.98019 0.93562 1.23041 1.01648 0.96966 0.96169 1.22857 0.99436 0.98470 0.97290 1.22959 0.98277 1.00415 0.96326 1.75008 1.09662 1.25771 1.04344 1.78283 1.19625 0.88924 1.21851 1.22614 0.88239 0.87400 0.97878 0.93791 0.90588 0.92803 0.84452 0.77624 0.90510 0.88914 0.75246 0.86949 0.86748 0.92522 0.92659 0.88042 0.90660 0.90842 0.89528 0.91574 0.91174 0.90728 0.93507 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.04 11.39 21.65 0.25 -51.79 16 2 C -0.06 -2.90 5.50 84.86 0.47 -2.44 16 3 Si 0.98 42.12 29.55 68.60 2.03 44.15 16 4 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.30 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.24 -12.05 10.70 84.03 0.90 -11.16 16 8 H 0.09 4.36 7.83 -2.91 -0.02 4.33 16 9 N -0.63 -28.10 3.70 -716.76 -2.65 -30.76 16 10 C 0.13 4.34 8.74 86.48 0.76 5.10 16 11 C 0.10 3.41 5.14 46.74 0.24 3.65 16 12 N -0.27 -8.19 3.54 -332.08 -1.18 -9.36 16 13 C -0.01 -0.37 10.72 83.49 0.89 0.53 16 14 C -0.05 -1.27 6.61 41.59 0.28 -0.99 16 15 C 0.22 4.88 6.23 85.63 0.53 5.41 16 16 N -0.72 -13.78 5.55 -466.80 -2.59 -16.37 16 17 C 0.51 10.64 7.83 87.66 0.69 11.32 16 18 O -0.58 -17.07 15.98 -3.00 -0.05 -17.12 16 19 C -0.13 -1.74 5.70 29.85 0.17 -1.57 16 20 C -0.09 -1.36 4.33 30.59 0.13 -1.23 16 21 C -0.11 -1.24 3.64 -10.27 -0.04 -1.28 16 22 C -0.14 -1.59 7.65 31.18 0.24 -1.35 16 23 C -0.14 -1.52 8.09 31.18 0.25 -1.27 16 24 C -0.14 -1.68 7.64 31.12 0.24 -1.44 16 25 N -0.28 -8.84 12.41 -48.60 -0.60 -9.44 16 26 N -0.11 -3.57 13.17 37.02 0.49 -3.08 16 27 C 0.17 6.62 6.90 86.43 0.60 7.22 16 28 H 0.25 13.65 8.31 -92.70 -0.77 12.88 16 29 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.14 4.37 8.14 -2.38 -0.02 4.35 16 32 H 0.21 4.78 6.73 -2.91 -0.02 4.76 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.41 6.51 8.46 -92.71 -0.78 5.72 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 39 H 0.05 1.01 7.83 -2.39 -0.02 0.99 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.95 7.92 -2.39 -0.02 0.93 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 43 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.07 0.98 8.10 -2.38 -0.02 0.96 16 47 H 0.05 1.81 6.31 -2.39 -0.02 1.80 16 48 H 0.06 2.92 7.16 -2.39 -0.02 2.90 16 Total: -1.00 -64.76 396.48 2.21 -62.54 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.18 Total: 20.71 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 6.34 Total: 10.52 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -6.29 Total: -120.81 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.05 Total: -17.12 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -64.76 2.21 -62.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107153683.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.177 kcal (2) G-P(sol) polarization free energy of solvation -64.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds