Wall clock time and date at job start Tue Mar 31 2020 18:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 120.00188 * 2 1 4 4 H 1.48496 * 109.47029 * 269.99621 * 3 2 1 5 5 H 1.48500 * 109.46724 * 29.99577 * 3 2 1 6 6 H 1.48499 * 109.47280 * 149.99334 * 3 2 1 7 7 C 1.38810 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.47587 * 134.49160 * 180.02562 * 9 7 2 11 11 C 1.53943 * 86.11372 * 155.35584 * 10 9 7 12 12 N 1.46497 * 113.73765 * 137.95286 * 11 10 9 13 13 C 1.35317 * 125.87017 * 276.92228 * 12 11 10 14 14 C 1.35348 * 106.17735 * 180.21003 * 13 12 11 15 15 C 1.50695 * 126.75026 * 179.78015 * 14 13 12 16 16 N 1.46501 * 109.47705 * 94.99599 * 15 14 13 17 17 C 1.34773 * 120.00017 * 179.97438 * 16 15 14 18 18 O 1.21271 * 120.00319 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99465 * 179.97438 * 17 16 15 20 20 C 1.53007 * 109.46908 * 180.02562 * 19 17 16 21 21 C 1.52993 * 109.47057 * 180.02562 * 20 19 17 22 22 C 1.52997 * 109.47049 * 180.02562 * 21 20 19 23 23 C 1.53002 * 117.49791 * 243.74389 * 22 21 20 24 24 C 1.53003 * 117.50143 * 175.08450 * 22 21 20 25 25 N 1.33774 * 106.49647 * 359.63857 * 14 13 12 26 26 N 1.28636 * 108.88665 * 0.37294 * 25 14 13 27 27 C 1.47811 * 134.45712 * 359.86196 * 9 7 2 28 28 H 0.97005 * 119.99940 * 0.02562 * 1 2 3 29 29 H 1.09000 * 113.76860 * 41.05573 * 10 9 7 30 30 H 1.09000 * 113.86642 * 269.67306 * 10 9 7 31 31 H 1.09004 * 113.74249 * 269.15104 * 11 10 9 32 32 H 1.08002 * 126.90702 * 359.93974 * 13 12 11 33 33 H 1.09004 * 109.46902 * 214.99581 * 15 14 13 34 34 H 1.09001 * 109.47591 * 334.99010 * 15 14 13 35 35 H 0.96996 * 119.99307 * 359.97438 * 16 15 14 36 36 H 1.08998 * 109.46874 * 300.00049 * 19 17 16 37 37 H 1.08996 * 109.47008 * 60.00347 * 19 17 16 38 38 H 1.08998 * 109.46628 * 300.00140 * 20 19 17 39 39 H 1.09000 * 109.47159 * 59.99697 * 20 19 17 40 40 H 1.09004 * 109.47005 * 299.99811 * 21 20 19 41 41 H 1.09000 * 109.47603 * 59.99700 * 21 20 19 42 42 H 1.08999 * 115.55490 * 29.41414 * 22 21 20 43 43 H 1.09002 * 117.49950 * 359.97438 * 23 22 21 44 44 H 1.09004 * 117.50034 * 145.01650 * 23 22 21 45 45 H 1.08991 * 117.50226 * 214.97628 * 24 22 21 46 46 H 1.09002 * 117.49656 * 0.02562 * 24 22 21 47 47 H 1.09001 * 113.76395 * 90.38187 * 27 9 7 48 48 H 1.08996 * 113.83516 * 318.92330 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7201 -3.8102 0.0015 11 6 0.3466 -4.0826 0.6410 12 7 -0.3333 -5.2612 0.0981 13 6 -1.0749 -5.2979 -1.0332 14 6 -1.5148 -6.5721 -1.1545 15 6 -2.3868 -7.1242 -2.2526 16 7 -1.5447 -7.7293 -3.2875 17 6 -2.1110 -8.2911 -4.3738 18 8 -3.3176 -8.2955 -4.4948 19 6 -1.2445 -8.9129 -5.4386 20 6 -2.1300 -9.4736 -6.5534 21 6 -1.2504 -10.1054 -7.6341 22 6 -2.1358 -10.6655 -8.7491 23 6 -2.1104 -12.1779 -8.9789 24 6 -1.4383 -11.2393 -9.9841 25 7 -1.0207 -7.2457 -0.1097 26 7 -0.3277 -6.4401 0.6151 27 6 -0.1058 -2.7571 0.0026 28 1 -0.4850 0.8401 -0.0004 29 1 2.5619 -4.0321 0.6574 30 1 1.8333 -4.2371 -0.9950 31 1 0.3582 -4.0631 1.7308 32 1 -1.2787 -4.4748 -1.7021 33 1 -3.0552 -7.8802 -1.8403 34 1 -2.9759 -6.3177 -2.6891 35 1 -0.5796 -7.7254 -3.1908 36 1 -0.5768 -8.1566 -5.8511 37 1 -0.6550 -9.7192 -5.0022 38 1 -2.7980 -10.2297 -6.1411 39 1 -2.7193 -8.6671 -6.9896 40 1 -0.5820 -9.3495 -8.0464 41 1 -0.6614 -10.9120 -7.1976 42 1 -3.0837 -10.1493 -8.9010 43 1 -1.4626 -12.7739 -8.3360 44 1 -3.0415 -12.6567 -9.2822 45 1 -1.9274 -11.1009 -10.9482 46 1 -0.3486 -11.2182 -10.0020 47 1 -0.5311 -2.8722 -0.9944 48 1 -0.7188 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107198186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:29 Heat of formation + Delta-G solvation = 109.351470 kcal Electronic energy + Delta-G solvation = -26996.339967 eV Core-core repulsion = 23090.065393 eV Total energy + Delta-G solvation = -3906.274574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.35213 -40.71380 -39.93417 -38.54665 -36.32856 -34.95094 -34.68221 -33.64945 -32.46071 -29.73835 -29.42799 -27.39993 -26.76813 -25.99425 -23.50253 -23.37693 -23.11731 -22.26687 -21.35674 -21.16683 -21.10945 -19.04447 -18.51107 -17.83748 -17.51036 -16.97191 -16.92105 -16.70980 -16.34213 -16.02094 -15.78012 -15.34549 -15.19444 -14.91022 -14.70665 -14.34764 -14.24444 -13.72686 -13.58582 -13.39975 -13.26639 -12.99812 -12.92331 -12.76491 -12.61983 -12.61394 -12.43375 -12.34104 -12.10659 -11.92011 -11.79577 -11.71982 -11.71904 -11.16264 -11.04578 -10.94191 -10.85338 -10.69301 -10.26493 -10.10186 -9.10539 -8.00755 -5.35963 0.56813 1.25002 1.29302 1.48882 1.50267 1.57781 1.69927 2.42044 2.44643 2.95877 3.07727 3.12449 3.31759 3.34162 3.71109 3.74255 3.84845 3.91930 4.00482 4.07549 4.09937 4.16020 4.23303 4.30122 4.45412 4.50080 4.57427 4.60273 4.69345 4.78416 4.82590 4.83950 4.92049 4.92806 4.96700 5.01056 5.05569 5.10456 5.12112 5.28300 5.29827 5.36998 5.37044 5.40964 5.54580 5.66280 5.77555 6.55820 6.80612 7.26805 7.45805 7.49231 8.34022 9.15986 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014600 B = 0.001794 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.361977 B =15600.471883 C =16774.959025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.055 4.055 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.239 4.239 8 H 0.091 0.909 9 N -0.627 5.627 10 C 0.126 3.874 11 C 0.104 3.896 12 N -0.268 5.268 13 C -0.014 4.014 14 C -0.049 4.049 15 C 0.218 3.782 16 N -0.718 5.718 17 C 0.511 3.489 18 O -0.585 6.585 19 C -0.134 4.134 20 C -0.096 4.096 21 C -0.083 4.083 22 C -0.164 4.164 23 C -0.186 4.186 24 C -0.181 4.181 25 N -0.281 5.281 26 N -0.108 5.108 27 C 0.165 3.835 28 H 0.253 0.747 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.138 0.862 32 H 0.207 0.793 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.412 0.588 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.047 0.953 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 -18.970 -13.796 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.249 4.249 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.366 4.366 8 H 0.109 0.891 9 N -0.354 5.354 10 C 0.000 4.000 11 C 0.002 3.998 12 N -0.061 5.061 13 C -0.167 4.167 14 C -0.188 4.188 15 C 0.092 3.908 16 N -0.371 5.371 17 C 0.300 3.700 18 O -0.465 6.465 19 C -0.174 4.174 20 C -0.135 4.135 21 C -0.120 4.120 22 C -0.182 4.182 23 C -0.223 4.223 24 C -0.218 4.218 25 N -0.148 5.148 26 N -0.087 5.087 27 C 0.038 3.962 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.224 0.776 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.248 0.752 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.119 0.881 47 H 0.065 0.935 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.159 -19.491 -12.642 23.261 hybrid contribution 0.142 1.937 -0.557 2.020 sum -1.017 -17.554 -13.199 21.987 Atomic orbital electron populations 1.69913 1.06337 1.26211 1.57125 1.25585 0.96545 1.00794 1.01976 0.85078 0.77805 0.78944 0.77478 1.21330 1.22142 1.19195 1.19345 0.90994 0.82255 1.44047 0.89099 1.45898 1.02864 1.00435 1.86242 1.23018 0.94373 0.84045 0.98592 1.24692 0.94391 0.79672 1.01032 1.47718 1.32387 1.09404 1.16566 1.23831 0.98765 1.01110 0.92984 1.21930 1.06116 0.91451 0.99290 1.19226 0.89993 0.98001 0.83530 1.46037 1.11177 1.59073 1.20765 1.21342 0.88863 0.77129 0.82708 1.90693 1.16937 1.59895 1.78985 1.21737 0.98665 1.02715 0.94237 1.21239 0.97520 0.99982 0.94713 1.21153 0.96817 1.00384 0.93665 1.22397 1.01272 0.96299 0.98277 1.23123 1.03005 0.92606 1.03547 1.23048 1.00356 1.04258 0.94136 1.75008 1.09665 1.25776 1.04347 1.78283 1.19629 0.88926 1.21852 1.22617 0.88249 0.87409 0.97890 0.93807 0.90597 0.92786 0.84461 0.77615 0.90534 0.88901 0.75221 0.86581 0.86705 0.92706 0.92608 0.90613 0.90850 0.88538 0.88324 0.88900 0.88621 0.88149 0.93491 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -51.94 11.39 21.65 0.25 -51.69 16 2 C -0.05 -2.84 5.50 84.86 0.47 -2.38 16 3 Si 0.98 42.08 29.55 68.60 2.03 44.10 16 4 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 7 C -0.24 -12.01 10.70 84.03 0.90 -11.11 16 8 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.63 -28.02 3.70 -716.76 -2.65 -30.67 16 10 C 0.13 4.33 8.74 86.48 0.76 5.08 16 11 C 0.10 3.40 5.14 46.74 0.24 3.64 16 12 N -0.27 -8.16 3.54 -332.08 -1.18 -9.33 16 13 C -0.01 -0.36 10.72 83.49 0.89 0.53 16 14 C -0.05 -1.27 6.61 41.59 0.28 -0.99 16 15 C 0.22 4.85 6.23 85.63 0.53 5.38 16 16 N -0.72 -13.61 5.55 -466.80 -2.59 -16.20 16 17 C 0.51 10.50 7.83 87.66 0.69 11.18 16 18 O -0.58 -17.00 15.98 -3.00 -0.05 -17.05 16 19 C -0.13 -1.69 5.70 29.85 0.17 -1.52 16 20 C -0.10 -1.43 4.46 30.59 0.14 -1.29 16 21 C -0.08 -0.92 5.49 30.59 0.17 -0.76 16 22 C -0.16 -2.09 5.73 -10.79 -0.06 -2.15 16 23 C -0.19 -2.15 10.18 30.62 0.31 -1.84 16 24 C -0.18 -1.97 10.26 30.62 0.31 -1.66 16 25 N -0.28 -8.81 12.41 -48.60 -0.60 -9.41 16 26 N -0.11 -3.56 13.17 37.02 0.49 -3.07 16 27 C 0.16 6.59 6.90 86.43 0.60 7.19 16 28 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16 29 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.14 4.36 8.14 -2.38 -0.02 4.34 16 32 H 0.21 4.75 6.73 -2.91 -0.02 4.73 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.41 6.38 8.46 -92.71 -0.78 5.59 16 36 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 39 H 0.06 0.99 8.10 -2.39 -0.02 0.98 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 0.70 7.88 -2.39 -0.02 0.68 16 42 H 0.10 1.36 8.08 -2.39 -0.02 1.34 16 43 H 0.10 1.03 8.03 -2.39 -0.02 1.01 16 44 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.05 1.82 6.31 -2.39 -0.02 1.80 16 48 H 0.06 2.92 7.16 -2.39 -0.02 2.90 16 Total: -1.00 -65.17 401.36 2.26 -62.91 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.18 Total: 21.09 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.39 Total: 9.32 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -6.29 Total: -120.38 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.05 Total: -17.05 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -65.17 2.26 -62.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107198186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.261 kcal (2) G-P(sol) polarization free energy of solvation -65.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds