Wall clock time and date at job start Tue Mar 31 2020 18:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00150 * 2 1 4 4 H 1.48500 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47045 * 299.99513 * 3 2 1 6 6 H 1.48504 * 109.47474 * 59.99547 * 3 2 1 7 7 C 1.38816 * 119.99363 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99516 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00483 * 359.97438 * 7 2 1 10 10 C 1.46739 * 125.24922 * 359.97438 * 9 7 2 11 11 C 1.54074 * 106.54121 * 161.25832 * 10 9 7 12 12 C 1.53865 * 103.73659 * 28.05772 * 11 10 9 13 13 C 1.53005 * 111.25516 * 93.95505 * 12 11 10 14 14 N 1.46505 * 109.46889 * 61.01194 * 13 12 11 15 15 C 1.34777 * 119.99412 * 179.97438 * 14 13 12 16 16 O 1.21279 * 120.00645 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99598 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.46930 * 180.02562 * 17 15 14 19 19 N 1.46502 * 109.47056 * 180.02562 * 18 17 15 20 20 C 1.35315 * 125.87191 * 125.00095 * 19 18 17 21 21 C 1.35344 * 106.17731 * 179.73450 * 20 19 18 22 22 N 1.33776 * 106.49718 * 359.97438 * 21 20 19 23 23 N 1.28633 * 108.88517 * 359.97438 * 22 21 20 24 24 C 1.53358 * 110.29135 * 217.87084 * 12 11 10 25 25 C 1.55531 * 105.83431 * 118.03688 * 24 12 11 26 26 C 1.54681 * 104.35330 * 334.35924 * 25 24 12 27 27 C 1.46887 * 125.25165 * 179.97438 * 9 7 2 28 28 H 1.09005 * 111.83284 * 58.49604 * 27 9 7 29 29 H 0.97003 * 119.99466 * 0.02562 * 1 2 3 30 30 H 1.09004 * 110.04107 * 41.98673 * 10 9 7 31 31 H 1.08999 * 110.04467 * 280.52713 * 10 9 7 32 32 H 1.09003 * 110.57188 * 269.49596 * 11 10 9 33 33 H 1.08997 * 110.70023 * 146.69062 * 11 10 9 34 34 H 1.09004 * 109.47132 * 301.01716 * 13 12 11 35 35 H 1.08994 * 109.47421 * 181.01440 * 13 12 11 36 36 H 0.96997 * 120.00181 * 0.02562 * 14 13 12 37 37 H 1.08996 * 109.47560 * 60.00242 * 17 15 14 38 38 H 1.09003 * 109.47255 * 299.99888 * 17 15 14 39 39 H 1.09004 * 109.47423 * 60.00143 * 18 17 15 40 40 H 1.09002 * 109.47147 * 300.00074 * 18 17 15 41 41 H 1.07998 * 126.90914 * 359.71348 * 20 19 18 42 42 H 1.08000 * 126.75529 * 179.97438 * 21 20 19 43 43 H 1.08997 * 110.06002 * 238.04770 * 24 12 11 44 44 H 1.09001 * 110.05669 * 359.54228 * 24 12 11 45 45 H 1.09002 * 110.54395 * 215.55195 * 25 24 12 46 46 H 1.09000 * 110.35375 * 93.07818 * 25 24 12 47 47 H 1.09003 * 110.61669 * 278.64788 * 26 25 24 48 48 H 1.09006 * 110.61388 * 155.66274 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1358 -2.5223 0.0028 11 6 -0.4450 -3.9555 -0.4709 12 6 0.7943 -4.7585 -0.0389 13 6 0.5841 -5.4097 1.3295 14 7 -0.5476 -6.3375 1.2601 15 6 -0.9192 -7.0302 2.3549 16 8 -0.3171 -6.8852 3.3976 17 6 -2.0829 -7.9851 2.2833 18 6 -2.2932 -8.6362 3.6517 19 7 -3.4242 -9.5649 3.5820 20 6 -3.3969 -10.8744 3.9216 21 6 -4.6480 -11.3451 3.7097 22 7 -5.3703 -10.3139 3.2573 23 7 -4.6164 -9.2736 3.1939 24 6 1.1477 -5.8046 -1.1032 25 6 2.5692 -5.4298 -1.6110 26 6 2.6834 -3.9104 -1.3445 27 6 1.9404 -3.7221 0.0017 28 1 2.5909 -3.8685 0.8640 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5779 -1.7988 -0.6822 31 1 -0.5241 -2.3697 1.0098 32 1 -0.5614 -3.9840 -1.5543 33 1 -1.3399 -4.3386 0.0195 34 1 0.3763 -4.6382 2.0710 35 1 1.4838 -5.9548 1.6147 36 1 -1.0290 -6.4538 0.4260 37 1 -1.8751 -8.7563 1.5417 38 1 -2.9830 -7.4402 1.9984 39 1 -2.5014 -7.8647 4.3931 40 1 -1.3933 -9.1809 3.9371 41 1 -2.5475 -11.4319 4.2877 42 1 -4.9951 -12.3546 3.8735 43 1 1.1402 -6.8021 -0.6639 44 1 0.4370 -5.7535 -1.9281 45 1 2.6619 -5.6383 -2.6769 46 1 3.3283 -5.9741 -1.0492 47 1 2.1928 -3.3439 -2.1360 48 1 3.7284 -3.6147 -1.2508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107377413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:05 Heat of formation + Delta-G solvation = 83.297713 kcal Electronic energy + Delta-G solvation = -28760.724192 eV Core-core repulsion = 24853.319842 eV Total energy + Delta-G solvation = -3907.404350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.52653 -40.26014 -39.12348 -35.63986 -34.85207 -34.02973 -31.92324 -31.46990 -31.25627 -30.29792 -28.00020 -26.75004 -25.82268 -24.09485 -23.86141 -22.97114 -21.79350 -20.75211 -20.11810 -19.87328 -18.47731 -18.06257 -17.19819 -16.79792 -16.58488 -16.02084 -15.64184 -15.22240 -14.99914 -14.89182 -14.54082 -14.37971 -13.85644 -13.56874 -13.49993 -13.15729 -13.00841 -12.90128 -12.57576 -12.14779 -11.90290 -11.78636 -11.55293 -11.33425 -11.19368 -11.18039 -10.84680 -10.78519 -10.72187 -10.50047 -10.32836 -10.25427 -10.09475 -9.90208 -9.87887 -9.69709 -9.62764 -9.52409 -9.03418 -8.62535 -6.84604 -5.68373 -3.07423 1.28790 1.94039 2.29952 2.44383 3.11485 3.38341 3.44251 3.46454 3.98602 4.18693 4.27626 4.47029 4.53737 4.70842 4.80429 4.88616 4.90546 4.92157 4.96655 5.05775 5.23439 5.45932 5.46871 5.47556 5.50707 5.69746 5.77120 5.81307 5.84740 5.95074 6.00697 6.02445 6.11137 6.22660 6.25007 6.29453 6.37009 6.41211 6.52498 6.64095 6.70748 6.80889 7.07466 7.37761 7.52222 7.65925 7.84299 8.04768 8.21779 8.32977 9.22183 9.83167 10.46046 11.37293 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019238 B = 0.002318 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.068691 B =12077.683104 C =12814.500780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.596 5.596 10 C 0.163 3.837 11 C -0.133 4.133 12 C -0.082 4.082 13 C 0.140 3.860 14 N -0.717 5.717 15 C 0.518 3.482 16 O -0.544 6.544 17 C -0.156 4.156 18 C 0.131 3.869 19 N -0.290 5.290 20 C -0.049 4.049 21 C -0.055 4.055 22 N -0.273 5.273 23 N -0.084 5.084 24 C -0.111 4.111 25 C -0.122 4.122 26 C -0.130 4.130 27 C 0.173 3.827 28 H 0.047 0.953 29 H 0.251 0.749 30 H 0.093 0.907 31 H 0.012 0.988 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.402 0.598 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.191 0.809 42 H 0.189 0.811 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 -22.246 2.383 22.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.320 5.320 10 C 0.038 3.962 11 C -0.172 4.172 12 C -0.083 4.083 13 C 0.017 3.983 14 N -0.368 5.368 15 C 0.303 3.697 16 O -0.422 6.422 17 C -0.197 4.197 18 C 0.010 3.990 19 N -0.084 5.084 20 C -0.200 4.200 21 C -0.212 4.212 22 N -0.139 5.139 23 N -0.064 5.064 24 C -0.149 4.149 25 C -0.160 4.160 26 C -0.170 4.170 27 C 0.065 3.935 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.030 0.970 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.237 0.763 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.208 0.792 42 H 0.206 0.794 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.151 -20.745 2.618 21.145 hybrid contribution 1.073 -0.015 0.062 1.075 sum -2.077 -20.760 2.680 21.035 Atomic orbital electron populations 1.69893 1.04846 1.24658 1.57606 1.24786 0.95710 0.97684 1.02474 0.86043 0.78691 0.83827 0.77211 1.20551 1.21823 1.21825 1.19073 0.90491 0.82347 1.42915 0.90475 1.44340 1.01583 0.99526 1.86538 1.21435 0.84547 0.90946 0.99294 1.22803 0.95104 0.99055 1.00241 1.21881 0.98219 0.95267 0.92957 1.21400 0.87693 0.91495 0.97702 1.46040 1.34449 1.43438 1.12843 1.20091 0.84534 0.81143 0.83977 1.90746 1.55645 1.66372 1.29462 1.21879 0.99871 0.99969 0.97963 1.21868 0.85351 0.92712 0.99056 1.47601 1.10167 1.08962 1.41677 1.23748 1.02215 0.85555 1.08449 1.23652 0.91039 1.00906 1.05631 1.75146 1.25719 0.96576 1.16476 1.78332 0.88585 1.21403 1.18045 1.22378 0.97605 0.97310 0.97578 1.22519 0.96093 0.97602 0.99823 1.22993 1.00321 0.93736 0.99989 1.21511 0.91763 0.85395 0.94843 0.93556 0.93860 0.88914 0.96968 0.92047 0.92545 0.90715 0.91536 0.76323 0.88043 0.86871 0.87074 0.86612 0.79214 0.79367 0.92320 0.91755 0.92514 0.92422 0.90940 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 10.14 55.49 0.56 -25.89 16 2 C -0.01 -0.30 5.48 -17.43 -0.10 -0.40 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 7 C -0.22 -5.89 9.96 -15.06 -0.15 -6.04 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.31 2.99 -162.45 -0.49 -14.80 16 10 C 0.16 3.76 5.65 -3.35 -0.02 3.74 16 11 C -0.13 -2.27 5.77 -25.72 -0.15 -2.41 16 12 C -0.08 -1.25 0.53 -153.05 -0.08 -1.33 16 13 C 0.14 2.02 4.43 -4.04 -0.02 2.00 16 14 N -0.72 -8.02 4.65 -60.29 -0.28 -8.30 16 15 C 0.52 5.76 7.83 -10.98 -0.09 5.67 16 16 O -0.54 -8.02 15.98 5.56 0.09 -7.94 16 17 C -0.16 -1.19 5.83 -27.88 -0.16 -1.36 16 18 C 0.13 0.98 5.74 -4.04 -0.02 0.95 16 19 N -0.29 -2.55 3.44 -61.26 -0.21 -2.76 16 20 C -0.05 -0.33 11.57 -17.05 -0.20 -0.53 16 21 C -0.06 -0.45 12.05 -17.74 -0.21 -0.66 16 22 N -0.27 -3.29 12.41 30.23 0.38 -2.92 16 23 N -0.08 -1.00 12.92 60.35 0.78 -0.22 16 24 C -0.11 -1.38 5.75 -25.20 -0.14 -1.53 16 25 C -0.12 -1.62 6.88 -24.50 -0.17 -1.79 16 26 C -0.13 -2.25 6.23 -24.84 -0.15 -2.40 16 27 C 0.17 3.31 3.59 -65.89 -0.24 3.07 16 28 H 0.05 0.92 7.93 -51.93 -0.41 0.51 16 29 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.09 2.45 6.16 -51.93 -0.32 2.13 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 1.02 7.42 -51.93 -0.39 0.63 16 33 H 0.06 0.85 7.03 -51.93 -0.36 0.48 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.40 3.67 7.55 -40.82 -0.31 3.36 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.11 0.89 8.12 -51.93 -0.42 0.47 16 39 H 0.11 0.91 8.10 -51.93 -0.42 0.49 16 40 H 0.12 0.66 8.02 -51.93 -0.42 0.24 16 41 H 0.19 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.19 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.06 0.63 7.51 -51.93 -0.39 0.24 16 44 H 0.06 0.77 7.28 -51.93 -0.38 0.39 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 48 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 383.13 15.07 5.77 5.77 Total: -1.00 -33.43 383.13 -7.90 -41.34 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.59 Total: 1.89 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.90 Total: -3.02 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.74 Total: -54.89 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.09 Total: -7.94 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.43 -7.90 -41.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107377413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.634 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds