Wall clock time and date at job start Tue Mar 31 2020 18:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00150 * 2 1 4 4 H 1.48500 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47045 * 299.99513 * 3 2 1 6 6 H 1.48504 * 109.47474 * 59.99547 * 3 2 1 7 7 C 1.38816 * 119.99363 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99516 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00483 * 359.97438 * 7 2 1 10 10 C 1.46739 * 125.24922 * 359.97438 * 9 7 2 11 11 C 1.54074 * 106.54121 * 161.25832 * 10 9 7 12 12 C 1.53865 * 103.73659 * 28.05772 * 11 10 9 13 13 C 1.53005 * 111.25516 * 93.95505 * 12 11 10 14 14 N 1.46505 * 109.46889 * 61.01194 * 13 12 11 15 15 C 1.34777 * 119.99412 * 179.97438 * 14 13 12 16 16 O 1.21279 * 120.00645 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99598 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.46930 * 180.02562 * 17 15 14 19 19 N 1.46502 * 109.47056 * 180.02562 * 18 17 15 20 20 C 1.35315 * 125.87191 * 125.00095 * 19 18 17 21 21 C 1.35344 * 106.17731 * 179.73450 * 20 19 18 22 22 N 1.33776 * 106.49718 * 359.97438 * 21 20 19 23 23 N 1.28633 * 108.88517 * 359.97438 * 22 21 20 24 24 C 1.53358 * 110.29135 * 217.87084 * 12 11 10 25 25 C 1.55531 * 105.83431 * 118.03688 * 24 12 11 26 26 C 1.54681 * 104.35330 * 334.35924 * 25 24 12 27 27 C 1.46887 * 125.25165 * 179.97438 * 9 7 2 28 28 H 1.09005 * 111.83284 * 58.49604 * 27 9 7 29 29 H 0.97003 * 119.99466 * 0.02562 * 1 2 3 30 30 H 1.09004 * 110.04107 * 41.98673 * 10 9 7 31 31 H 1.08999 * 110.04467 * 280.52713 * 10 9 7 32 32 H 1.09003 * 110.57188 * 269.49596 * 11 10 9 33 33 H 1.08997 * 110.70023 * 146.69062 * 11 10 9 34 34 H 1.09004 * 109.47132 * 301.01716 * 13 12 11 35 35 H 1.08994 * 109.47421 * 181.01440 * 13 12 11 36 36 H 0.96997 * 120.00181 * 0.02562 * 14 13 12 37 37 H 1.08996 * 109.47560 * 60.00242 * 17 15 14 38 38 H 1.09003 * 109.47255 * 299.99888 * 17 15 14 39 39 H 1.09004 * 109.47423 * 60.00143 * 18 17 15 40 40 H 1.09002 * 109.47147 * 300.00074 * 18 17 15 41 41 H 1.07998 * 126.90914 * 359.71348 * 20 19 18 42 42 H 1.08000 * 126.75529 * 179.97438 * 21 20 19 43 43 H 1.08997 * 110.06002 * 238.04770 * 24 12 11 44 44 H 1.09001 * 110.05669 * 359.54228 * 24 12 11 45 45 H 1.09002 * 110.54395 * 215.55195 * 25 24 12 46 46 H 1.09000 * 110.35375 * 93.07818 * 25 24 12 47 47 H 1.09003 * 110.61669 * 278.64788 * 26 25 24 48 48 H 1.09006 * 110.61388 * 155.66274 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1358 -2.5223 0.0028 11 6 -0.4450 -3.9555 -0.4709 12 6 0.7943 -4.7585 -0.0389 13 6 0.5841 -5.4097 1.3295 14 7 -0.5476 -6.3375 1.2601 15 6 -0.9192 -7.0302 2.3549 16 8 -0.3171 -6.8852 3.3976 17 6 -2.0829 -7.9851 2.2833 18 6 -2.2932 -8.6362 3.6517 19 7 -3.4242 -9.5649 3.5820 20 6 -3.3969 -10.8744 3.9216 21 6 -4.6480 -11.3451 3.7097 22 7 -5.3703 -10.3139 3.2573 23 7 -4.6164 -9.2736 3.1939 24 6 1.1477 -5.8046 -1.1032 25 6 2.5692 -5.4298 -1.6110 26 6 2.6834 -3.9104 -1.3445 27 6 1.9404 -3.7221 0.0017 28 1 2.5909 -3.8685 0.8640 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5779 -1.7988 -0.6822 31 1 -0.5241 -2.3697 1.0098 32 1 -0.5614 -3.9840 -1.5543 33 1 -1.3399 -4.3386 0.0195 34 1 0.3763 -4.6382 2.0710 35 1 1.4838 -5.9548 1.6147 36 1 -1.0290 -6.4538 0.4260 37 1 -1.8751 -8.7563 1.5417 38 1 -2.9830 -7.4402 1.9984 39 1 -2.5014 -7.8647 4.3931 40 1 -1.3933 -9.1809 3.9371 41 1 -2.5475 -11.4319 4.2877 42 1 -4.9951 -12.3546 3.8735 43 1 1.1402 -6.8021 -0.6639 44 1 0.4370 -5.7535 -1.9281 45 1 2.6619 -5.6383 -2.6769 46 1 3.3283 -5.9741 -1.0492 47 1 2.1928 -3.3439 -2.1360 48 1 3.7284 -3.6147 -1.2508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107377413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:04 Heat of formation + Delta-G solvation = 60.584502 kcal Electronic energy + Delta-G solvation = -28761.709111 eV Core-core repulsion = 24853.319842 eV Total energy + Delta-G solvation = -3908.389269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.15945 -41.42256 -40.31677 -36.48954 -36.12432 -35.39260 -33.47603 -32.47527 -31.93775 -31.68998 -29.30414 -28.34348 -26.72878 -25.72832 -25.13120 -23.57278 -22.59324 -21.97436 -21.49865 -21.08397 -19.69777 -18.96384 -18.75976 -17.72874 -17.42686 -16.91644 -16.80535 -16.62728 -16.13356 -15.92679 -15.74557 -15.34547 -15.12989 -14.73220 -14.57819 -14.43010 -14.29798 -13.96210 -13.64816 -13.43547 -13.20765 -12.92410 -12.87386 -12.77457 -12.64141 -12.43822 -12.39804 -11.98648 -11.86943 -11.83655 -11.62887 -11.55286 -11.42643 -11.34296 -11.19937 -11.04259 -10.91680 -10.69570 -10.30069 -10.09737 -8.83634 -7.78121 -5.18171 0.69067 1.34428 1.44014 1.44694 1.54604 1.55945 1.67091 2.22401 2.49349 3.32907 3.41467 3.49335 3.63215 3.65716 3.72717 3.73224 3.86176 3.98657 4.25431 4.28292 4.29957 4.36759 4.39111 4.44122 4.49949 4.53555 4.60673 4.66423 4.67782 4.77695 4.86764 4.90955 4.94293 5.05194 5.15991 5.18815 5.29750 5.31921 5.37189 5.41884 5.47027 5.54076 5.61768 5.66657 5.71640 5.87090 6.30927 6.49498 7.14323 7.17587 7.55917 7.84624 8.45265 9.25749 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019238 B = 0.002318 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.068691 B =12077.683104 C =12814.500780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.071 4.071 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.615 5.615 10 C 0.167 3.833 11 C -0.118 4.118 12 C -0.067 4.067 13 C 0.152 3.848 14 N -0.709 5.709 15 C 0.521 3.479 16 O -0.582 6.582 17 C -0.142 4.142 18 C 0.131 3.869 19 N -0.289 5.289 20 C -0.032 4.032 21 C -0.066 4.066 22 N -0.314 5.314 23 N -0.127 5.127 24 C -0.101 4.101 25 C -0.112 4.112 26 C -0.126 4.126 27 C 0.156 3.844 28 H 0.038 0.962 29 H 0.243 0.757 30 H 0.055 0.945 31 H -0.028 1.028 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.416 0.584 37 H 0.128 0.872 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.139 0.861 41 H 0.234 0.766 42 H 0.218 0.782 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.046 0.954 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.541 -25.933 1.649 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.263 4.263 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.224 1.224 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.339 5.339 10 C 0.042 3.958 11 C -0.156 4.156 12 C -0.068 4.068 13 C 0.028 3.972 14 N -0.361 5.361 15 C 0.308 3.692 16 O -0.462 6.462 17 C -0.182 4.182 18 C 0.010 3.990 19 N -0.083 5.083 20 C -0.183 4.183 21 C -0.224 4.224 22 N -0.179 5.179 23 N -0.106 5.106 24 C -0.139 4.139 25 C -0.150 4.150 26 C -0.166 4.166 27 C 0.050 3.950 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.073 0.927 31 H -0.010 1.010 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.253 0.747 37 H 0.146 0.854 38 H 0.130 0.870 39 H 0.116 0.884 40 H 0.157 0.843 41 H 0.251 0.749 42 H 0.234 0.766 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.065 0.935 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.068 -24.461 1.849 24.618 hybrid contribution 0.793 1.102 0.380 1.410 sum -1.275 -23.359 2.229 23.500 Atomic orbital electron populations 1.70149 1.06124 1.24642 1.59181 1.25577 0.96570 1.00819 1.03361 0.85072 0.78225 0.79923 0.76544 1.19083 1.21925 1.22429 1.19400 0.90846 0.83771 1.41387 0.90357 1.44613 1.02205 1.00810 1.86260 1.21174 0.84170 0.94188 0.96247 1.22639 0.96917 0.95113 1.00923 1.21753 0.95456 0.95038 0.94592 1.21046 0.89110 0.91113 0.95956 1.45876 1.33737 1.42658 1.13796 1.20618 0.84703 0.80898 0.83017 1.90738 1.57089 1.67560 1.30820 1.21776 0.97828 0.99657 0.98954 1.21935 0.85698 0.92799 0.98558 1.47711 1.09579 1.09888 1.41147 1.24464 1.03004 0.84610 1.06236 1.24272 0.91447 1.01499 1.05166 1.75085 1.27156 0.97800 1.17885 1.78290 0.89877 1.22024 1.20431 1.22361 0.97334 0.97352 0.96810 1.22475 0.97063 0.93932 1.01505 1.22822 0.99192 0.96998 0.97578 1.21828 0.93382 0.84212 0.95613 0.94472 0.94684 0.92712 1.00980 0.90885 0.90388 0.94782 0.90894 0.74673 0.85354 0.86992 0.88399 0.84290 0.74937 0.76579 0.89287 0.90258 0.90504 0.90767 0.93483 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.45 10.14 21.65 0.22 -57.23 16 2 C -0.07 -4.07 5.48 84.86 0.47 -3.60 16 3 Si 0.97 46.38 29.55 68.60 2.03 48.40 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 7 C -0.22 -12.47 9.96 84.04 0.84 -11.64 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 9 N -0.61 -30.69 2.99 -667.87 -2.00 -32.69 16 10 C 0.17 8.14 5.65 86.70 0.49 8.63 16 11 C -0.12 -3.92 5.77 31.25 0.18 -3.74 16 12 C -0.07 -1.95 0.53 -51.23 -0.03 -1.97 16 13 C 0.15 4.20 4.43 86.38 0.38 4.58 16 14 N -0.71 -14.15 4.65 -463.04 -2.15 -16.30 16 15 C 0.52 10.52 7.83 87.66 0.69 11.21 16 16 O -0.58 -16.51 15.98 -3.03 -0.05 -16.56 16 17 C -0.14 -1.80 5.83 29.85 0.17 -1.62 16 18 C 0.13 1.65 5.74 86.38 0.50 2.15 16 19 N -0.29 -4.47 3.44 -347.73 -1.20 -5.66 16 20 C -0.03 -0.32 11.57 83.49 0.97 0.64 16 21 C -0.07 -0.93 12.05 83.73 1.01 0.08 16 22 N -0.31 -7.33 12.41 -58.26 -0.72 -8.06 16 23 N -0.13 -2.93 12.92 37.02 0.48 -2.45 16 24 C -0.10 -2.09 5.75 31.59 0.18 -1.90 16 25 C -0.11 -2.55 6.88 32.04 0.22 -2.33 16 26 C -0.13 -4.22 6.23 31.82 0.20 -4.02 16 27 C 0.16 5.99 3.59 46.11 0.17 6.15 16 28 H 0.04 1.49 7.93 -2.38 -0.02 1.47 16 29 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.05 3.07 6.16 -2.39 -0.01 3.06 16 31 H -0.03 -1.53 8.14 -2.39 -0.02 -1.55 16 32 H 0.07 2.30 7.42 -2.39 -0.02 2.28 16 33 H 0.08 2.26 7.03 -2.39 -0.02 2.24 16 34 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.42 6.08 7.55 -92.71 -0.70 5.38 16 37 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.11 1.54 8.12 -2.39 -0.02 1.52 16 39 H 0.10 1.52 8.10 -2.38 -0.02 1.50 16 40 H 0.14 1.11 8.02 -2.39 -0.02 1.09 16 41 H 0.23 0.08 8.06 -2.91 -0.02 0.06 16 42 H 0.22 1.41 8.06 -2.91 -0.02 1.39 16 43 H 0.09 1.40 7.51 -2.39 -0.02 1.38 16 44 H 0.08 1.49 7.28 -2.39 -0.02 1.47 16 45 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.05 1.81 8.06 -2.39 -0.02 1.79 16 48 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -79.62 383.13 3.30 -76.32 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.26 Total: 11.61 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 6.43 Total: 2.61 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -5.37 Total: -122.38 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.05 Total: -16.56 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -79.62 3.30 -76.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107377413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.900 kcal (2) G-P(sol) polarization free energy of solvation -79.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds