Wall clock time and date at job start Tue Mar 31 2020 18:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48501 * 109.46968 * 274.98216 * 3 2 1 5 5 H 1.48501 * 109.47009 * 34.97922 * 3 2 1 6 6 H 1.48495 * 109.47436 * 154.97769 * 3 2 1 7 7 C 1.38816 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99594 * 171.67028 * 7 2 1 9 9 N 1.36936 * 120.00189 * 351.66995 * 7 2 1 10 10 C 1.47155 * 126.52026 * 344.43794 * 9 7 2 11 11 C 1.53837 * 106.27992 * 210.82263 * 10 9 7 12 12 C 1.53676 * 105.56133 * 340.70367 * 11 10 9 13 13 C 1.52998 * 111.17459 * 122.04181 * 12 11 10 14 14 N 1.46498 * 109.47289 * 62.60011 * 13 12 11 15 15 C 1.34777 * 119.99797 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00132 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99971 * 180.27476 * 15 14 13 18 18 C 1.52989 * 109.47394 * 179.72767 * 17 15 14 19 19 C 1.50700 * 109.47394 * 180.02562 * 18 17 15 20 20 C 1.35354 * 126.90999 * 84.99970 * 19 18 17 21 21 N 1.33774 * 106.49461 * 179.97438 * 20 19 18 22 22 N 1.28636 * 108.88483 * 0.02562 * 21 20 19 23 23 N 1.28715 * 110.17643 * 359.74965 * 22 21 20 24 24 H 0.96999 * 125.86367 * 180.23964 * 23 22 21 25 25 C 1.53514 * 110.45098 * 245.92822 * 12 11 10 26 26 C 1.54191 * 106.58308 * 116.98072 * 25 12 11 27 27 C 1.54729 * 104.35145 * 335.42857 * 26 25 12 28 28 C 1.47252 * 126.51876 * 164.39643 * 9 7 2 29 29 H 1.09006 * 112.28429 * 26.95270 * 28 9 7 30 30 H 0.97001 * 120.00286 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.09297 * 330.03104 * 10 9 7 32 32 H 1.09005 * 110.08891 * 91.56126 * 10 9 7 33 33 H 1.09000 * 110.23533 * 221.67915 * 11 10 9 34 34 H 1.09000 * 110.23049 * 99.72639 * 11 10 9 35 35 H 1.09001 * 109.47253 * 302.59845 * 13 12 11 36 36 H 1.08999 * 109.47028 * 182.60414 * 13 12 11 37 37 H 0.96998 * 119.99840 * 0.02562 * 14 13 12 38 38 H 1.09006 * 109.47325 * 299.73187 * 17 15 14 39 39 H 1.08999 * 109.46886 * 59.72688 * 17 15 14 40 40 H 1.09004 * 109.47716 * 300.00283 * 18 17 15 41 41 H 1.09007 * 109.46938 * 60.00313 * 18 17 15 42 42 H 1.08000 * 126.75309 * 359.94642 * 20 19 18 43 43 H 1.09002 * 110.04394 * 237.08022 * 25 12 11 44 44 H 1.08991 * 110.04644 * 358.54364 * 25 12 11 45 45 H 1.09004 * 110.80092 * 216.49810 * 26 25 12 46 46 H 1.09004 * 110.11043 * 94.02358 * 26 25 12 47 47 H 1.09000 * 110.65217 * 278.62843 * 27 26 25 48 48 H 1.09002 * 110.65227 * 155.53452 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5043 2.6200 0.8026 6 1 3.5964 1.4121 0.5922 7 6 2.0103 -1.2022 0.0005 8 1 3.0817 -1.2072 -0.1350 9 7 1.3364 -2.3818 0.1729 10 6 -0.0361 -2.5403 0.6793 11 6 -0.0727 -3.8938 1.4096 12 6 1.1373 -4.6802 0.8812 13 6 2.0725 -5.0874 2.0216 14 7 1.3630 -5.9822 2.9392 15 6 1.9935 -6.4716 4.0253 16 8 3.1481 -6.1708 4.2431 17 6 1.2655 -7.3969 4.9659 18 6 2.2026 -7.8090 6.1029 19 6 1.4749 -8.7348 7.0432 20 6 1.3349 -10.0753 6.9178 21 7 0.6211 -10.4830 7.9731 22 7 0.3373 -9.4626 8.7032 23 7 0.8341 -8.3941 8.1852 24 1 0.7600 -7.4983 8.5498 25 6 0.6730 -5.9053 0.0812 26 6 1.1680 -5.7002 -1.3646 27 6 1.3200 -4.1668 -1.5041 28 6 1.8472 -3.7327 -0.1141 29 1 2.9332 -3.7888 -0.0384 30 1 -0.4850 0.8400 -0.0004 31 1 -0.2749 -1.7340 1.3727 32 1 -0.7433 -2.5422 -0.1502 33 1 -0.9968 -4.4229 1.1770 34 1 0.0159 -3.7440 2.4856 35 1 2.3973 -4.1973 2.5605 36 1 2.9421 -5.6017 1.6123 37 1 0.4397 -6.2229 2.7648 38 1 0.3962 -6.8851 5.3789 39 1 0.9405 -8.2846 4.4232 40 1 3.0719 -8.3208 5.6900 41 1 2.5276 -6.9212 6.6457 42 1 1.7228 -10.6939 6.1220 43 1 1.0975 -6.8136 0.5089 44 1 -0.4154 -5.9634 0.0849 45 1 0.4384 -6.0781 -2.0809 46 1 2.1299 -6.1935 -1.5049 47 1 0.3561 -3.7022 -1.7118 48 1 2.0421 -3.9212 -2.2828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107552876.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:39 Heat of formation + Delta-G solvation = 64.892584 kcal Electronic energy + Delta-G solvation = -28681.873316 eV Core-core repulsion = 24773.670860 eV Total energy + Delta-G solvation = -3908.202456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.66077 -40.18702 -39.10248 -35.05391 -34.63511 -33.92617 -33.51098 -31.73650 -30.73948 -30.02699 -28.13081 -26.85501 -25.60808 -23.97182 -23.58574 -23.29793 -21.99894 -20.65473 -20.57658 -19.62413 -18.64137 -18.37043 -17.32688 -16.87411 -16.40621 -15.99370 -15.63590 -15.11900 -14.80302 -14.69865 -14.35388 -14.24596 -13.78834 -13.60802 -13.57597 -13.31265 -12.80187 -12.71558 -12.59394 -12.10750 -11.93621 -11.74460 -11.65586 -11.25702 -11.18678 -10.95463 -10.94916 -10.84813 -10.67957 -10.62160 -10.31943 -10.15083 -10.10381 -10.08300 -9.79426 -9.70904 -9.65810 -9.48031 -8.97115 -8.61110 -6.84122 -5.81122 -3.14719 1.16046 2.18681 2.35833 2.55985 3.14839 3.35867 3.42478 3.44012 4.06357 4.27937 4.44877 4.47235 4.55998 4.78623 4.85346 4.89985 4.96078 5.02581 5.06399 5.14100 5.43211 5.50548 5.53327 5.55649 5.56551 5.69037 5.76627 5.84750 5.88370 6.01679 6.03932 6.06889 6.10603 6.28068 6.33029 6.39019 6.43334 6.44205 6.58893 6.60423 6.75026 6.85046 7.06349 7.40602 7.48266 7.57764 7.72884 8.08020 8.16674 8.22885 9.13748 9.75690 10.47546 11.32586 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.002360 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.164440 B =11860.484368 C =12723.044485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.004 4.004 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.075 0.925 9 N -0.586 5.586 10 C 0.169 3.831 11 C -0.133 4.133 12 C -0.086 4.086 13 C 0.141 3.859 14 N -0.721 5.721 15 C 0.509 3.491 16 O -0.544 6.544 17 C -0.138 4.138 18 C -0.033 4.033 19 C -0.005 4.005 20 C -0.047 4.047 21 N -0.267 5.267 22 N -0.084 5.084 23 N -0.389 5.389 24 H 0.448 0.552 25 C -0.110 4.110 26 C -0.123 4.123 27 C -0.135 4.135 28 C 0.168 3.832 29 H 0.065 0.935 30 H 0.253 0.747 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.400 0.600 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.192 0.808 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.006 -16.997 8.338 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.201 4.201 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.093 0.907 9 N -0.308 5.308 10 C 0.044 3.956 11 C -0.171 4.171 12 C -0.088 4.088 13 C 0.018 3.982 14 N -0.372 5.372 15 C 0.295 3.705 16 O -0.421 6.421 17 C -0.179 4.179 18 C -0.073 4.073 19 C -0.139 4.139 20 C -0.204 4.204 21 N -0.134 5.134 22 N -0.064 5.064 23 N -0.110 5.110 24 H 0.294 0.706 25 C -0.148 4.148 26 C -0.161 4.161 27 C -0.175 4.175 28 C 0.059 3.941 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.234 0.766 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.106 0.894 42 H 0.209 0.791 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.022 -17.225 9.635 19.736 hybrid contribution 0.374 1.872 -0.887 2.105 sum 0.351 -15.352 8.748 17.673 Atomic orbital electron populations 1.69941 1.05003 1.25230 1.55973 1.24871 0.95583 0.97870 1.01780 0.86163 0.78858 0.83588 0.77523 1.21579 1.21678 1.20526 1.19003 0.90720 0.82562 1.43476 0.90746 1.44500 1.12615 0.99882 1.73756 1.21072 0.86772 0.92046 0.95753 1.22713 0.95387 0.99148 0.99901 1.21987 0.96261 0.95658 0.94855 1.21400 0.94199 0.93007 0.89578 1.46093 1.16542 1.49239 1.25288 1.20447 0.87177 0.81153 0.81728 1.90733 1.17326 1.60018 1.74057 1.21663 0.99492 1.00336 0.96369 1.19884 0.96917 0.97774 0.92737 1.22368 1.02942 0.96952 0.91678 1.23470 1.03803 0.92595 1.00542 1.75117 1.13520 1.20966 1.03762 1.78314 1.18463 0.88521 1.21100 1.45175 1.36582 1.11853 1.17388 0.70606 1.22206 1.00359 0.96611 0.95641 1.22275 1.00109 0.97898 0.95856 1.23043 1.01872 0.93157 0.99472 1.21680 0.96045 0.85700 0.90706 0.91735 0.93726 0.91226 0.95954 0.92509 0.92707 0.90934 0.91786 0.76582 0.88886 0.88157 0.87693 0.89359 0.79140 0.92342 0.91981 0.92558 0.92488 0.91115 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.06 10.89 55.49 0.60 -25.46 16 2 C 0.00 -0.11 5.39 -17.43 -0.09 -0.20 16 3 Si 0.91 21.60 29.56 -169.99 -5.03 16.58 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.12 10.27 -15.06 -0.15 -6.27 16 8 H 0.07 1.95 7.84 -52.49 -0.41 1.53 16 9 N -0.59 -13.90 2.98 -161.97 -0.48 -14.38 16 10 C 0.17 3.79 5.04 -3.25 -0.02 3.78 16 11 C -0.13 -2.19 5.81 -25.94 -0.15 -2.34 16 12 C -0.09 -1.28 0.65 -153.01 -0.10 -1.38 16 13 C 0.14 2.00 4.27 -4.04 -0.02 1.99 16 14 N -0.72 -7.79 4.84 -60.29 -0.29 -8.08 16 15 C 0.51 5.48 7.83 -10.99 -0.09 5.39 16 16 O -0.54 -8.08 15.98 5.55 0.09 -7.99 16 17 C -0.14 -0.88 5.68 -27.89 -0.16 -1.03 16 18 C -0.03 -0.21 5.07 -27.89 -0.14 -0.35 16 19 C -0.01 -0.04 6.56 -82.09 -0.54 -0.57 16 20 C -0.05 -0.38 11.99 -17.73 -0.21 -0.59 16 21 N -0.27 -2.97 12.41 30.24 0.38 -2.59 16 22 N -0.08 -0.87 13.38 60.35 0.81 -0.06 16 23 N -0.39 -2.72 6.98 33.54 0.23 -2.48 16 24 H 0.45 1.63 8.96 -190.40 -1.71 -0.07 16 25 C -0.11 -1.37 5.62 -25.84 -0.15 -1.51 16 26 C -0.12 -1.65 6.83 -25.20 -0.17 -1.82 16 27 C -0.14 -2.36 6.37 -24.84 -0.16 -2.52 16 28 C 0.17 3.18 3.59 -65.66 -0.24 2.94 16 29 H 0.06 1.24 7.95 -51.93 -0.41 0.82 16 30 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.07 1.78 6.87 -51.93 -0.36 1.43 16 32 H 0.02 0.55 7.71 -51.93 -0.40 0.15 16 33 H 0.06 0.82 7.11 -51.93 -0.37 0.45 16 34 H 0.05 0.88 7.62 -51.93 -0.40 0.49 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.40 3.45 7.86 -40.82 -0.32 3.13 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.19 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.06 0.63 7.47 -51.93 -0.39 0.24 16 44 H 0.06 0.73 7.10 -51.93 -0.37 0.36 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 1.40 7.28 -51.93 -0.38 1.03 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -33.44 382.66 -9.17 -42.61 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -8.87 Total: 0.60 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.38 Total: -4.51 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 1.25 Total: -53.06 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.44 -9.17 -42.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107552876.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.502 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds